Vigun09g197200.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Vigun09g197200.1 vs. DB:Swiss
Match: GLB3_ARATH (Two-on-two hemoglobin-3 OS=Arabidopsis thaliana OX=3702 GN=GLB3 PE=1 SV=1) HSP 1 Score: 249.98 bits (637), Expect = 9.947e-85 Identity = 121/171 (70.76%), Postives = 137/171 (80.12%), Query Frame = 1 Query: 1 MQSLQQKASEWSGVSTDDAFAIDDGDLFHTLGLQTFVTLSTNFYNRVYDDDEEWFRSIFGNSDKEKAIQNQYEFLVQRMGGPPLYSQRRGHPALIARHRPFPVTHEAAERWLHHMGQALDSTSAIDDDSKMKLMNFFRHTAYFLVAGVELKDQHH---HTP---CKDSALK 495 MQSLQ KAS SGV +AFAID+ +LF LGLQTF+ LSTNFY RVYDD+EEWF+SIF NS+KE AIQNQYEF VQRMGGPPLYSQR+GHPALI RHRPFPVTH+AAERWL HM ALD + ID DSK+K+M FFRHTA+FLVAG ELK+Q+ H P CK +A K Sbjct: 1 MQSLQDKASVLSGVDQAEAFAIDESNLFDKLGLQTFINLSTNFYTRVYDDEEEWFQSIFSNSNKEDAIQNQYEFFVQRMGGPPLYSQRKGHPALIGRHRPFPVTHQAAERWLEHMQNALDDSVDIDQDSKIKMMKFFRHTAFFLVAGNELKNQNEKPKHKPQCACKHAANK 171
BLAST of Vigun09g197200.1 vs. DB:Swiss
Match: TRHBO_BACSU (Group 2 truncated hemoglobin YjbI OS=Bacillus subtilis (strain 168) OX=224308 GN=yjbI PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 9.132e-17 Identity = 44/126 (34.92%), Postives = 65/126 (51.59%), Query Frame = 1 Query: 82 FHTLGLQTFVTLSTNFYNRVYDDDEEWFRSIFGNSDKEKAIQNQYEFLVQRMGGPPLYSQRRGHPALIARHRPFPVTHEAAERWLHHMGQALDSTSAIDDDSKMKLMNFFRHTAYFLVAGVELKDQ 459 + +G + L FY RV + IF SD + + Q +FL Q +GGPPLY++ GHP L ARH PFP+T+E A+ WL M A+D ++ + + L TA +V E +D+ Sbjct: 9 YEAIGEELLSQLVDTFYERVASHP--LLKPIF-PSDLTETARKQKQFLTQYLGGPPLYTEEHGHPMLRARHLPFPITNERADAWLSCMKDAMDHV-GLEGEIREFLFGRLELTARHMVNQTEAEDR 130
BLAST of Vigun09g197200.1 vs. DB:Swiss
Match: TRHBO_MYCTU (Group 2 truncated hemoglobin GlbO OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=glbO PE=1 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 2.318e-13 Identity = 39/116 (33.62%), Postives = 62/116 (53.45%), Query Frame = 1 Query: 94 GLQTFVTLSTNFYNRVYDDDEEWFRSIFGNSDKEKAIQNQYEFLVQRMGGPPLYSQRRGHPALIARHRPFPVTHEAAERWLHHMGQALDS--TSAIDDDSKMKLMNFFRHTAYFLV 435 G +TF + + FY +V +D E R ++ D A + FL Q GGP YS++RGHP L RH PF ++ + WL M A+ S + +DD+ + +L+++ A+ LV Sbjct: 11 GAKTFDAIVSRFYAQVAED--EVLRRVYPEDDLAGAEERLRMFLEQYWGGPRTYSEQRGHPRLRMRHAPFRISLIERDAWLRCMHTAVASIDSETLDDEHRRELLDYLEMAAHSLV 124
BLAST of Vigun09g197200.1 vs. DB:Swiss
Match: TRHBO_MYCTO (Group 2 truncated hemoglobin GlbO OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=glbO PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 2.318e-13 Identity = 39/116 (33.62%), Postives = 62/116 (53.45%), Query Frame = 1 Query: 94 GLQTFVTLSTNFYNRVYDDDEEWFRSIFGNSDKEKAIQNQYEFLVQRMGGPPLYSQRRGHPALIARHRPFPVTHEAAERWLHHMGQALDS--TSAIDDDSKMKLMNFFRHTAYFLV 435 G +TF + + FY +V +D E R ++ D A + FL Q GGP YS++RGHP L RH PF ++ + WL M A+ S + +DD+ + +L+++ A+ LV Sbjct: 11 GAKTFDAIVSRFYAQVAED--EVLRRVYPEDDLAGAEERLRMFLEQYWGGPRTYSEQRGHPRLRMRHAPFRISLIERDAWLRCMHTAVASIDSETLDDEHRRELLDYLEMAAHSLV 124
BLAST of Vigun09g197200.1 vs. DB:Swiss
Match: TRHBO_MYCBO (Group 2 truncated hemoglobin GlbO OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) OX=233413 GN=glbO PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 2.318e-13 Identity = 39/116 (33.62%), Postives = 62/116 (53.45%), Query Frame = 1 Query: 94 GLQTFVTLSTNFYNRVYDDDEEWFRSIFGNSDKEKAIQNQYEFLVQRMGGPPLYSQRRGHPALIARHRPFPVTHEAAERWLHHMGQALDS--TSAIDDDSKMKLMNFFRHTAYFLV 435 G +TF + + FY +V +D E R ++ D A + FL Q GGP YS++RGHP L RH PF ++ + WL M A+ S + +DD+ + +L+++ A+ LV Sbjct: 11 GAKTFDAIVSRFYAQVAED--EVLRRVYPEDDLAGAEERLRMFLEQYWGGPRTYSEQRGHPRLRMRHAPFRISLIERDAWLRCMHTAVASIDSETLDDEHRRELLDYLEMAAHSLV 124
BLAST of Vigun09g197200.1 vs. DB:Swiss
Match: TRHBO_MYCLE (Group 2 truncated hemoglobin GlbO OS=Mycobacterium leprae (strain TN) OX=272631 GN=glbO PE=3 SV=1) HSP 1 Score: 65.0846 bits (157), Expect = 7.585e-13 Identity = 39/116 (33.62%), Postives = 61/116 (52.59%), Query Frame = 1 Query: 94 GLQTFVTLSTNFYNRVYDDDEEWFRSIFGNSDKEKAIQNQYEFLVQRMGGPPLYSQRRGHPALIARHRPFPVTHEAAERWLHHMGQALDS--TSAIDDDSKMKLMNFFRHTAYFLV 435 G +TF + + FY +V +D E R ++ D A + FL Q GGP YS +RGHP L RH PF +T + WL M A+ S + +D++ + +L+++ A+ LV Sbjct: 11 GAETFKAIVSRFYAQVPED--EILRELYPADDLAGAEERLRMFLEQYWGGPRTYSSQRGHPRLRMRHAPFRITAIERDAWLRCMHTAVASIDSHTLDNEHRRELLDYLEMAAHSLV 124 The following BLAST results are available for this feature:
BLAST of Vigun09g197200.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot) Total hits: 6
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun09g197200.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g197200.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g197200.1; organism=Vigna unguiculata; type=mRNA; length=966bpback to top protein sequence of Vigun09g197200.1_Vu_IT97K-499-35_v1.1 >Vigun09g197200.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g197200.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g197200.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=173bpback to top mRNA from alignment at Vu09:37221794..37223392- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Vigun09g197200.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g197200.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g197200.1; organism=Vigna unguiculata; type=mRNA; length=1599bp; location=Sequence derived from: Vu09:37221794..37223392- (Vigna unguiculataback to top Coding sequence (CDS) from alignment at Vu09:37221794..37223392- >Vigun09g197200.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g197200.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g197200.1; organism=Vigna unguiculata; type=CDS; length=519bp; location=Sequence derived from: Vu09:37221794..37223392- (Vigna unguiculataback to top |