Transcript Overview
Name Vigun09g208200.1 Unique Name Vigun09g208200.1_Vu_IT97K-499-35_v1.1 Type mRNA Organism Vigna unguiculata (cowpea) Sequence length 1527
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Species Type
Vigun09g208200.1 Vigun09g208200.1_Vu_IT97K-499-35_v1.1-protein Vigna unguiculata polypeptide Vigun09g208200.1_Vu_IT97K-499-35_v1.1 Vigun09g208200.1_Vu_IT97K-499-35_v1.1 Vigna unguiculata polypeptide
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Vigun09g208200.1.v1.1.five_prime_UTR.1 Vigun09g208200.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1 Vigna unguiculata five_prime_UTR
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Vigun09g208200.1.v1.1.CDS.1 Vigun09g208200.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1 Vigna unguiculata CDS Vigun09g208200.1.v1.1.CDS.2 Vigun09g208200.1.v1.1.CDS.2_Vu_IT97K-499-35_v1.1 Vigna unguiculata CDS Vigun09g208200.1.v1.1.CDS.3 Vigun09g208200.1.v1.1.CDS.3_Vu_IT97K-499-35_v1.1 Vigna unguiculata CDS Vigun09g208200.1.v1.1.CDS.4 Vigun09g208200.1.v1.1.CDS.4_Vu_IT97K-499-35_v1.1 Vigna unguiculata CDS
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Vigun09g208200.1.v1.1.three_prime_UTR.1 Vigun09g208200.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1 Vigna unguiculata three_prime_UTR
Homology
BLAST of Vigun09g208200.1 vs. DB:Swiss
Match:
OCP3_ARATH (Protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3 OS=Arabidopsis thaliana OX=3702 GN=OCP3 PE=1 SV=1)
HSP 1 Score: 225.713 bits (574), Expect = 6.664e-70
Identity = 111/173 (64.16%), Postives = 135/173 (78.03%), Query Frame = 1
Query: 535 KPLNLKNWQMKKLARALKAGRRKTSIKNLAADLCLDRALVLQLLRDPPPNLLMMSLTIPDEPATTAVSLETKPGEILLQETSIDQVESEPEAKV---PVHTLQRNWYAQKRLKKAHVDTLERVYRRSKRPTNAMISSIVHVTNIPRKRVVKWFEDKRAEEGVPDHRLPYQRSV 1044
+P LKNWQ+K+LA ALKAGRRKTSIKNLAA++CLDRA VL+LLRDPPP LLM+S T+PDE A + P ++ S + V EP+ KV VH +Q+ W AQKR+KKAH++TLE+VYRRSKRPTNA++SSIV VTN+PRKRV+KWFEDKRAE+GVPD R PYQ V
Sbjct: 182 RPTKLKNWQLKRLAYALKAGRRKTSIKNLAAEVCLDRAYVLELLRDPPPKLLMLSATLPDEKPPVAAPENSSPDPSPVESLSAEDVVVEPKEKVKDEAVHVMQQRWSAQKRVKKAHIETLEKVYRRSKRPTNAVVSSIVQVTNLPRKRVLKWFEDKRAEDGVPDKRAPYQAPV 354
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
200 400 600 800 1000 1200 1400 Expect = 4.3E-4 / Score = 27.7 Expect = 7.3E-6 / Score = 25.7 Score = 9.329 Expect = 1.2307E-6 / Score = 43.0009 Expect = 1.2E-8 / Score = 36.1 Score = Score = Score = Sequence SM00389 PF00046 PS50071 cd00086 G3DSA:1.10.10.60 mobidb-lite mobidb-lite SSF46689
IPR Term IPR Description Source Source Term Source Description Alignment
IPR001356 Homeobox domain SMART SM00389 HOX_1 coord: 284..342 IPR001356 Homeobox domain PFAM PF00046 Homeodomain coord: 286..334 IPR001356 Homeobox domain PROSITE PS50071 HOMEOBOX_2 coord: 278..338 IPR001356 Homeobox domain CDD cd00086 homeodomain coord: 284..333 None No IPR available GENE3D 1.10.10.60 coord: 279..341 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 138..176 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 135..185 IPR009057 Homeobox-like domain superfamily SUPERFAMILY 46689 Homeodomain-like coord: 280..341
Sequences
The
following sequences are available for this feature:
mRNA sequence
>Vigun09g208200.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g208200.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g208200.1; organism=Vigna unguiculata; type=mRNA; length=1527bp back to top protein sequence of Vigun09g208200.1_Vu_IT97K-499-35_v1.1
>Vigun09g208200.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g208200.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g208200.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=353bp back to top mRNA from alignment at Vu09:38243743..38247124+
Legend: five_prime_UTR polypeptide CDS three_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun09g208200.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g208200.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g208200.1; organism=Vigna unguiculata; type=mRNA; length=3382bp; location=Sequence derived from: Vu09:38243743..38247124+ (Vigna unguiculataCTAAACCCCGAAAAATATCAAACGCATCTCTGGCAGGCAGCGGATAAACC
CGGAAGAAGAGAAGG ATGAGTGCGGCGTTTCAGTGTTTATCGTGTGCGCG
GACTGAACCTTTCCTCACACCACCTCAATCCCTTACTCTTCCTTTCCAAC
GAAAACCATTTTTCTGCTCTCTTCCTCTTTCCTCTCGCGCTCGTAACCTC
TCTTCTTCAATCGTCGCTGCTGCTTCCAAAAAGAGAAAAAACAAG GTAAT
TTCAATATCACAATATTAGCACTCTTCTATATTTCTCTTTTTTTTTTTTA
ATTCTCTATGCATTTTTCTCCCTATCTTCCTGCCTTTTAGATTTCTTCGT
GTTCGGATTCAATGTCACTTAATTTTATCGTTTTATCTTTTGTAGAAAAA
ACTGTCTCGTCATCATGTTACTGAGGGCGGCGAGGAGGATATGGACGCGT
TCGAGCTTCTCTTCAACCAACTCGAACAAGATCTCAAACGCGGTGGTTTG
TCAGATGATGATGACGAAGATGGGATAACTGAAGAAGAGATGGCATTGCT
TGAACGTGAGTTGGAAAATGCCTTGGGGGACTTTGATGATGAATTGTTGA
ACTCGGATGTAATCGACGTAGAACTTGGTAGTGATCCAGAGAATGGTGAT
GAAGATGAAGATGAAGATGAGGATGAGGATGAGGATGAGGATGAGGATGA
GGATGACGATGGTGATGGTGATGATAGTGAGAGTGAGGATGGAGATGAAA
AGCCACTGAACCTTAAGAATTGGCAGATGAAGAAATTGGCCAGAGCTTTG
AAAGCCGGCCGCCGCAAAACAAGT GTAAGTGTCTTGTTCACTATTTTAAG
AAATTAGCTTGTTCCATTTCATTTATGTGCTTAATTAGCTGACTATTATG
ATTAGATAACTGATAACAATATGTTTATGAGACATAACCAAGGTTATATA
GGATTGTTTTGGTTACCTTTGACAGAGGTTAAGTGTTCTGATTTGTTGTT
CCCTACTTGAAGTGCTTCTGTGATGTTTAATCACGATCAGTTTGGGAAAA
TGTCAATTAGTTTATAAGCCTTTTATCCCAACATGGTCGCTAATATGGTG
CATCTTCTGATTTTATAGTCTCTTTTTAGTAGTAGTCAGGGAAGGTAGAA
CTTAGAAGCTAACTATAGCCTGATTGATCGATAAAGAACCGTCATGTCTG
GTTGCTTGCTCCTTGAATGACCTGGATTCTTTATTAATTGCCATTCATTA
TAGTTACTGCAGATGATCTTAATTTAATTTGCAAACACTTAACTTCAGTC
TGAAATTTTATTTTTCTTTTTCATTGAAATATTCAGATTAAAATAGTGGG
TTGAACTTTGCTTGAAAGTGAGCAAATTTGAAGGTAGTATATGTGTCCAT
GTGGTTAAGTTATTGAGAAATTAGGAGAAAATCAGTAATCATGGGTGTGT
CATGGACACTGTATTGAAGGATTATTTTGCCTTGGATAAATTTAATAATG
AAGAAAATGCCTTATGTTTTAATGGCGTTTTCCTGGAAAAATCTTGGTTC
ACATTAAATGTATTTTGTTAACCCAATTTTCAAGGAGGAGAAAGAAGAAA
GAGAAAAAAAAAAATCATTTCCAGAATTCCTACAAATCTGGCGGAAAGAC
AAGGTTAATACAAGTGAATAGGATTAATGGATCGGTCAAAACAGGATTAG
ACTAGATCATAAAATAAGGTTAGAGTATATTGGATTGAACCATGTCAAGA
GCTTACTCCTCAGGAATTTTAGATAAGATACTTTTTGCTTTGTTTTCTCC
ACATCTTAAGGGTTAAGAGTACATGAGTGGATTCATTTTATTGTTATGCA
AACATGCATACTTAACATGAAAAGGCAAAGTTGCCAGAACCGACCCTTCT
ATCAATTTCAGGATTCCATTCCTCAAGTTCACTTTTTGAACCATTGCAGA
TAAAAAATCTTGCTGCCGATCTTTGTCTTGATAGGGCTCTTGTTCTTCAG
TTACTTCGTGATCCTCCTCCAAATCTCTTAATGATGAGTCTTACTATACC
TGATGAACCCGCAACAACAGCAGTATCACTTGAAACTAAGCCCGGTGAGA
TTCTCCTTCAAGAAACAAGTATTGATCAAGTTGAATCTGAACCCGAGGCT
AAAGTACCTGTTCATACCTTGCAACGTAATTGGTATGCTCAAAAGCGATT
GAAGAAGGCCCATGTTGACACTCTCGAGAGAGTTTATAGGAGATCAAAAC
GACCTACT GTAAGTACCTTTATCATGCTACAATATTGTATAAATTCAATA
TCTTTGTTTCATGATTCTGTGTCATTTTTTGTTGGAAAATTTCGTGACAT
GTACTGCGACTACTAAAATGTTCCATCCATATTAGTATGAGATATAGAGA
CTTCATTCCCTCTTACACACTGAAATTCATAAACACTATATATGCACAAT
TTCACTTGTTACCTTTACTGGCACCAAATGTAGTGAAAAAAGGAGGCTGA
CGAAAAGGAAGAAAAGTCTGCCTAATGAAACTACTATGTTTTCTAATTTT
CATTACCACGTACATATATGATATGTTGCATTTGATAATGGCAAACATGA
GTCATGCATTTTGTTTTGTTCTCCAATCACAATTGAAGATCTGGTAATTT
GTATAAAATATAAAGGTTTGCATTAAAGTTGAACATAAAGGTGAATCTAT
TCTGTTTGGAGAATAACACTAAAAACACCTAAAGCAACTACACATAATTT
TTTCATTACTATAATCATTTCATAGTTTTCCTTACAACGAATTTTGTTAA
ATTTGATACCCTTGTCTGTATGCCTCGAACCAATGCAGAATGCAATGATC
AGCAGCATTGTACATGTAACAAACATTCCTCGAAAAAGAGTTGTTAAGTG
GTTTGAAGACAAACGTGCTGAGGAAGGAGTTCCAGATCACCGTCTACCTT
ACCAGCGCTCTGTTCCTGAAACCGCTTGA AGATTTGTCTTCGGTTCTGTT
TTTGTGCTGTAAGATCTGACAAATTTTACAATTGTGGTTTCACTAACTCT
GGTAATGTTTTTTTTTGGGGGGGGGGGGGGGGTAGCCATGCGAGGAACAG
GAATTAGAAATAGTGACGACAGTGAAATACTGGCTATTGAAAATGGCGCT
GCTTTCCTCTGATGAATTGCTTCTATTGTCGAATACCCAGAAGTTGTACC
AGAAGGGGTCTTCTGGTTCTGTCTCGTAATAGTCTTTTGAGCAAGATGAT
ATAGTTTCGGTAAACATGTTTTGTTAAGACAGGTAGTGAATATCACATAA
ATGTAAGTTATAATTTTTGTTCAACCAACATTAATAATAGTTTTATTACT
CAAGATTAATAAAGTTATTTTTTAGTCAATAC back to top Coding sequence (CDS) from alignment at Vu09:38243743..38247124+
>Vigun09g208200.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g208200.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g208200.1; organism=Vigna unguiculata; type=CDS; length=1059bp; location=Sequence derived from: Vu09:38243743..38247124+ (Vigna unguiculata back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: Molecular Function
Term Definition
GO:0003677 DNA binding
