Transcript Overview
Name | Vigun09g212200.1 |
Unique Name | Vigun09g212200.1_Vu_IT97K-499-35_v1.1 |
Type | mRNA |
Organism | Vigna unguiculata (cowpea) |
Sequence length | 2285 |
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
Vigun09g212200.1 | Vigun09g212200.1_Vu_IT97K-499-35_v1.1-protein | Vigna unguiculata | polypeptide |
Vigun09g212200.1_Vu_IT97K-499-35_v1.1 | Vigun09g212200.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | polypeptide |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Vigun09g212200.1.v1.1.CDS.9 | Vigun09g212200.1.v1.1.CDS.9_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
Vigun09g212200.1.v1.1.CDS.8 | Vigun09g212200.1.v1.1.CDS.8_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
Vigun09g212200.1.v1.1.CDS.7 | Vigun09g212200.1.v1.1.CDS.7_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
Vigun09g212200.1.v1.1.CDS.6 | Vigun09g212200.1.v1.1.CDS.6_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
Vigun09g212200.1.v1.1.CDS.5 | Vigun09g212200.1.v1.1.CDS.5_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
Vigun09g212200.1.v1.1.CDS.4 | Vigun09g212200.1.v1.1.CDS.4_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
Vigun09g212200.1.v1.1.CDS.3 | Vigun09g212200.1.v1.1.CDS.3_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
Vigun09g212200.1.v1.1.CDS.2 | Vigun09g212200.1.v1.1.CDS.2_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
Vigun09g212200.1.v1.1.CDS.1 | Vigun09g212200.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Vigun09g212200.1.v1.1.three_prime_UTR.1 | Vigun09g212200.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | three_prime_UTR |
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Vigun09g212200.1.v1.1.five_prime_UTR.1 | Vigun09g212200.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | five_prime_UTR |
Homology
The following BLAST results are available for this feature:
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun09g212200.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g212200.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g212200.1; organism=Vigna unguiculata; type=mRNA; length=2285bp CATTAACGAGGTTAATGTCCTGAGCAACTCGCCGGTCTCCCAAACACGAT ATTTTCTAACGGTTAACTATTCTTCTCTCTCTCCACACACACTCAGAGTA GTGAAGAACACAAGAACATCATAAGTTCATGTTGGTTCCTCTCACACAAT GCTAAGTTACAGGTCACTGCATTTTTGTTTTCTGCTCACGGTTTTCTTGT CCAGTTCCTTTCTGTTGTCGCACCAAGCTTCAGGGCCAGAAAATGAGGGA AAGGATGTTGTAGGCTTTTCTAGGTTGTATGTATACGATGCCGCACCACC GTTCGAGAACTCGCCCGTTCCCTTAGCTGCTGAGAGAACACGAAGAAAAG ACCCTCTTAATAGCTTCAACAAGTACATATATGGATGGAATATCAGTGAC AACCATTATTGGGCTTCTGTGGCATATACTGCAGTTCCTATGTTCAGTAT TGCAGCAGTTTGGTTCTTGGGCTTTGGCTTGTGCTTAATGACTATTGGTG TTTGTTACTTCTGTCGTAAAAGAGAGCCTTATGGTTATTCACCAACATGC TATGCCCTTTCCCTTATTCTCCTGATATTGTTCACATTTGCAGCAGTGAT TGGATGTGCAGTTCTCTACATCGGCCAGGGAAGTTTCCATCACAGCATGT CTTCCACATTGCAGTACGTGGTACATCAAGCTGATTCCACTGTGGATAAG CTTAGGAACGTGTCAGATTATCTTGCTCAGGCTAAACAGGTTGGAATCGA TCGAATTTTTCTCCCCACAAATGTTCAAACTGATATTGATGCGGCAGAAA CAGATATCAATAACTCTGCTGGCACACTTGCTGACAAGACAAAAGAGAAC TCAGACAACATACAAGATCTCTTAGACTCTGCGAGGTTGGCGCTGATCAT AATAGCTGCTGTTATGCTAGTCTTGACATTTCTTGGATTTTTATTCTCAA TTTTTGGAATACAGCTCCTTGTGTATATCTTGGTAATGGCAGGATGGGTT CTTGTTACTGGTGCCCTTATATTATGTGGTTCGTTCCTTGTTCTCCATAA TGCAACAGCAGACAGTTGTTTAGCAGTGAATGAATGGATCCAGTATCCAA TTGCACACACGGCAATGGACGATATTCTGCCATGTGTGGACAATGCTACT GCACAAGAAACATTTTTACGAAGCAAAGAAGTAACTTCTGAACTAGTGAA TTTGGTGAACCAGGTTATCACCAACGCCTCCAACATAAACTTCGCTCCCA ATTTCACCCCACTCTACTATAACCAATCTGGTCCCCTCTTGCCGCTCCTC TGCAATCCCTTCCATCCCGACATGACTGATAGACAATGTGATACTGGTGA AGTGACCCTAAGCAATGCAACACAGGTGTACGGCGGTTTCGTGTGCCAGG TTTCACCATCTGAGATATGCATGACGCAGGGGCGTTTGACCCCCACCTTC TACAACCAAGTCTCCGCCGGAATAAACGTGGCCAACGCTTTGTATAATGA TGCCCCCTCTTTGGTTGAGCTACAAGATTGCACCTTTGTTCGGGAAACTC TAAGCGTTATATCTACGGATCATTGTCCTGGTCTAAGGCGTTACAGTAGA TGGATCTATGTTGGATTGGTAATGGTCTCTTTTGCTGTCATGTTCTCTTT GATCTTCTGGATCGTGTATGGAAGAGAGCGTAGACATCGTCTGCATAGAA AAGAGTTAAAGGACTTGACTCctacacgtgcaccaccaccaggacaagca ctagcattagcCCAAATCCCTGAAGGAGACAAGTATAATTAACAAACTAG TTGATAATGATGTTGCTCTTCCATTGGTAGTTGGTGGATGAACATGTTTG AACTGTGTTTAGCTTTTTCCGGTGTTGGGTGTATAATGTTGTAGCTTCTT TGTATGACACGCTAGCTTTTTAATCAAATGTCATTATTTTACGTGGCATG ATGAAGAGGAGGAATCAAACAGCATACGAGGCACAAACAGAAGGATAGAG CACATTGTTTGTTCTTGTGAGGGCAATCATGACACCAACATGTCATGTCA CAGCTCTTAGATGTTGGACATGTTTTGTTTGGATGCAGTCACGGGAAAAA GTTATCTCAATATGGTCCTGAAAATATACAAAAAATAGGGAATAGTGCAC CCAATTTGACTGAATGTTGAGCTGTCTCTCTTTCATTTTGTGGATAAGTT AGCAGACTCTTCCATTTGGACCCAAACAGAACCCACTGAAAATAAAACAG GTTAAGAAAAGAACAAGAACACCTCTGCAAGACAA back to topprotein sequence of Vigun09g212200.1_Vu_IT97K-499-35_v1.1 >Vigun09g212200.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g212200.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g212200.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=548bp MLSYRSLHFCFLLTVFLSSSFLLSHQASGPENEGKDVVGFSRLYVYDAAP PFENSPVPLAAERTRRKDPLNSFNKYIYGWNISDNHYWASVAYTAVPMFS IAAVWFLGFGLCLMTIGVCYFCRKREPYGYSPTCYALSLILLILFTFAAV IGCAVLYIGQGSFHHSMSSTLQYVVHQADSTVDKLRNVSDYLAQAKQVGI DRIFLPTNVQTDIDAAETDINNSAGTLADKTKENSDNIQDLLDSARLALI IIAAVMLVLTFLGFLFSIFGIQLLVYILVMAGWVLVTGALILCGSFLVLH NATADSCLAVNEWIQYPIAHTAMDDILPCVDNATAQETFLRSKEVTSELV NLVNQVITNASNINFAPNFTPLYYNQSGPLLPLLCNPFHPDMTDRQCDTG EVTLSNATQVYGGFVCQVSPSEICMTQGRLTPTFYNQVSAGINVANALYN DAPSLVELQDCTFVRETLSVISTDHCPGLRRYSRWIYVGLVMVSFAVMFS LIFWIVYGRERRHRLHRKELKDLTPTRAPPPGQALALAQIPEGDKYN* back to topmRNA from alignment at Vu09:38637703..38642133- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Vigun09g212200.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g212200.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g212200.1; organism=Vigna unguiculata; type=mRNA; length=4431bp; location=Sequence derived from: Vu09:38637703..38642133- (Vigna unguiculata CATTAACGAGGTTAATGTCCTGAGCAACTCGCCGGTCTCCCAAACACGAT
ATTTTCTAACGGTTAACTATTCTTCTCTCTCTCCACACACACTCAGAGTA
GTGAAGAACACAAGAACATCATAAGTTCATGTTGGTTCCTCTCACACAAT
GCTAAGTTACAGGTCACTGCATTTTTGTTTTCTGCTCACGGTTTTCTTGT
CCAGTTCCTTTCTGTTGTCGCACCAAGCTTCAGGTATTTCACTCACAACT
CTCTCCCTCTGGCTTTTTATTCACTGTTTAGGAGACCCTAAAATCTTGGA
AGCCAAACAAGCCTCTAATTTAAACAAATGTTCTCACTTTTTTTCACTGG
GTTTAGTGGGGGACACATAAGTCACCACTATGACAATGCAGAACAGTGTT
TCATATGATTGTGGCTACTCTCTCACTCTTGAAGATGTTTCCTCAGAAAG
CAAAGCACATGACCATTTTGTTTTTTACAGGGCCAGAAAATGAGGGAAAG
GATGTTGTAGGCTTTTCTAGGTTGTATGTATACGATGCCGCACCACCGTT
CGAGAACTCGCCCGTTCCCTTAGCTGCTGAGAGAACACGAAGAAAAGACC
CTCTTAATAGCTTCAACAAGTACATATATGGATGGAATATCAGTGACAAC
CATTATTGGGCTGTAAGCACTTCGAACCGTTACTCCTTTGTACTGAGGAC
TGATAATGGTTTTATAGTGTGCCACTGAGGACTGTATTTCGTTAATTGTG
CTGTTCTGTTAGGCTCAGAATCTGTGCTTCTATTGTGGTTCTGGGATTTA
CATCACCTATCTTCAGCTATCATTTTAGTTTATCTGCCCAAACTATGAAA
TATGGAATTGTTGGAAAAGTATGTAACGAAGAGTGGTGGTTGTATTTGAA
TTGAAAGTATCTGTGTAGCAATAAAAAGGAGATGCTTTTGGTGCACACAT
TTGTGTTACCTATTTTATCCTTCGATTGATATAGATGCAACTGCAAGTAT
TATTCCAATATATGTATAGGATAAAACACAAGGACAGGATCTCTGCAGCC
TTTGGTGATGTTTTCTGATCAAAATTTGATTGTTATATCAATGACCTTAG
GAGGAACTCATTGGTAAAAATGACAAAAAGCATAAAAAGTAATGCACTAG
AAGTGATCCATTTATTAATATCTTGAGTAGTATCCGGGTTTGTGTAAAAT
TGGAGCCACTATATATGCTTTATTAAAAATACATTTAAATATTCCTTTGC
AGGTGTTTTTAAGGAAAACCAATATTTATCTCCATGGTGGTCATATATGC
TTTATTTAGTTTTACTGGATGAAGATAATGAATGGTCCTGTAGTGTGCTT
CAAATTTAATTGTTTGAATTTGATTTGGCTGAATTAGATTACAGTTGGGT
AATAATCTGGTGACTTCTGACTGATTTCTGTTGTTATGCTTTTCTTTTCT
TTAATTTTGTCTCTTTCCACTTTCAGCACTTTAATCTTACCAAGCTGTTT
GGTTTGCAATGTTGAATTTAAAAAGGCAAAACCCACTAACTATTTTTTTA
TTGAATGCAGTCTGTGGCATATACTGCAGTTCCTATGTTCAGTATTGCAG
CAGTTTGGTTCTTGGGCTTTGGCTTGTGCTTAATGACTATTGGTGTTTGT
TACTTCTGTCGTAAAAGAGAGCCTTATGGTTATTCACCAACATGCTATGC
CCTTTCCCTTATTCTCCTGATATTGTTCACATTTGCAGCAGTGTGTGTAC
ACATCTCTCTCCTTATGTTTTGCTTGTTTCAGGTTTTGTTGGATCTGTAT
CACAAATTGCACTTTTCTGTGTTAACAGGATTGGATGTGCAGTTCTCTAC
ATCGGCCAGGGAAGTTTCCATCACAGCATGTCTTCCACATTGCAGTACGT
GGTACATCAAGCTGATTCCACTGTGGATAAGCTTAGGAACGTGTCAGATT
ATCTTGCTCAGGCTAAACAGGTTGGAATCGATCGAATTTTTCTCCCCACA
AATGTTCAAACTGATATTGATGCGGCAGAAACAGATATCAATAACTCTGC
TGGCACACTTGCTGACAAGACAAAAGAGAACTCAGACAACATACAAGATC
TCTTAGACTCTGCGTAATGATTGATTCTGATGTTTCCACTACAGATATTT
GTTTTTTTGCTTTAGTTTTTACTCTATAACACCAATGTAACAATGATACA
GGAGGTTGGCGCTGATCATAATAGCTGCTGTTATGCTAGTCTTGACATTT
CTTGGATTTTGTAAGTCTCTTCTGTGCCCCCAATTTAGATGCACAAGTTC
TTACTTGCTATGGAATTCATTTCCTTCTTTTTACTTGTTACTACAGTATT
CTCAATTTTTGGAATACAGCTCCTTGTGTATATGTAAGTAATATATACTG
TGTACCACCCAATGTTACATACCTTTCTTGCGATTCTTTGATAGCAAACA
GAACTCCACTTCACATTATGTTTTCTCATGAAACACTTGGCATAAATAAT
TGCAGCTTGGTAATGGCAGGATGGGTTCTTGTTACTGGTGCCCTTATATT
ATGTGGTTCGTTCCTTGTTCTCCATAAGTAAGTTCCTATTTCCCCTCCCT
AAAATAGTCAAAAAGTATTCAATGATTTCACCATATATCTTATTTATTAA
ATTCTTTTTTGCTGCTTCTTTAGGAAATTCTTATTAGTAAGTTGTATGTA
AGCTTCATATAAAAGCTGCATTGTCTAATTAACGTGTCATAAGTGATTAG
TTTCAGATTGAGAGCACTTTGCACATTTCTCTCTCAATTTTTTCTTTGAA
GTTTATCCTTCTCTCATGATATCAGAGATCCTTTCTTGAGCTTCTTTTAT
CCACCGCTGCTCTCTGGTTCAGTTCTTCTTTTTCTCTTCTTTGATAGTCG
AGAATCTTTGATCGTTGTTCTTGCATATTTTTCTTTTTGAAACTTAAGTT
TTCTTCTCAATCTGAAATTATCACTTATCACAAGTTTGGACCATAGAATG
CAGCTTTTATGCGAAGCTTGCATATGAAATTTGGCATTTAGTGTGGAGCT
AATTCCTTTGTGTTTTGGTAGTGCAACAGCAGACAGTTGTTTAGCAGTGA
ATGAATGGATCCAGTATCCAATTGCACACACGGCAATGGACGATATTCTG
CCATGTGTGGACAATGCTACTGCACAAGAAACATTTTTACGAAGCAAAGA
AGTAACTTCTGAACTAGTGAATTTGGTGAACCAGGTTATCACCAACGCCT
CCAACATAAACTTCGCTCCCAATTTCACCCCACTCTACTATAACCAATCT
GGTCCCCTCTTGCCGCTCCTCTGCAATCCCTTCCATCCCGACATGACTGA
TAGACAATGTGATACTGGTGAAGTGACCCTAAGCAATGCAACACAGGTAC
ATAAATTGAACCACCTTCATATAACATACAAACACTGCCAAAACTAAATA
ACATAGAGAAAGTCCTAAATTAGCAGAAAAAATGTAGAGTTAATGTTAAT
ATTAGTTTATGTGTGATGCAGGTGTACGGCGGTTTCGTGTGCCAGGTTTC
ACCATCTGAGATATGCATGACGCAGGGGCGTTTGACCCCCACCTTCTACA
ACCAAGTCTCCGCCGGAATAAACGTGGCCAACGCTTTGTATAATGATGCC
CCCTCTTTGGTTGAGCTACAAGATTGCACCTTTGTTCGGGAAACTCTAAG
CGTTATATCTACGGATCATTGTCCTGGTCTAAGGCGTTACAGTAGATGGA
TCTATGTTGGATTGGTAATGGTCTCTTTTGCTGTCATGTTCTCTTTGATC
TTCTGGATCGTGTATGGAAGAGAGCGTAGACATCGTCTGCATAGAAAAGA
GTTAAAGGACTTGACTCCTACACGTGCACCACCACCAGGACAAGCACTAG
CATTAGCCCAAATCCCTGAAGGAGACAAGTATAATTAACAAACTAGTTGA
TAATGATGTTGCTCTTCCATTGGTAGTTGGTGGATGAACATGTTTGAACT
GTGTTTAGCTTTTTCCGGTGTTGGGTGTATAATGTTGTAGCTTCTTTGTA
TGACACGCTAGCTTTTTAATCAAATGTCATTATTTTACGTGGCATGATGA
AGAGGAGGAATCAAACAGCATACGAGGCACAAACAGAAGGATAGAGCACA
TTGTTTGTTCTTGTGAGGGCAATCATGACACCAACATGTCATGTCACAGC
TCTTAGATGTTGGACATGTTTTGTTTGGATGCAGTCACGGGAAAAAGTTA
TCTCAATATGGTCCTGAAAATATACAAAAAATAGGGAATAGTGCACCCAA
TTTGACTGAATGTTGAGCTGTCTCTCTTTCATTTTGTGGATAAGTTAGCA
GACTCTTCCATTTGGACCCAAACAGAACCCACTGAAAATAAAACAGGTTA
AGAAAAGAACAAGAACACCTCTGCAAGACAA back to topCoding sequence (CDS) from alignment at Vu09:38637703..38642133- >Vigun09g212200.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g212200.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g212200.1; organism=Vigna unguiculata; type=CDS; length=1644bp; location=Sequence derived from: Vu09:38637703..38642133- (Vigna unguiculata ATGCTAAGTTACAGGTCACTGCATTTTTGTTTTCTGCTCACGGTTTTCTT GTCCAGTTCCTTTCTGTTGTCGCACCAAGCTTCAGGGCCAGAAAATGAGG GAAAGGATGTTGTAGGCTTTTCTAGGTTGTATGTATACGATGCCGCACCA CCGTTCGAGAACTCGCCCGTTCCCTTAGCTGCTGAGAGAACACGAAGAAA AGACCCTCTTAATAGCTTCAACAAGTACATATATGGATGGAATATCAGTG ACAACCATTATTGGGCTTCTGTGGCATATACTGCAGTTCCTATGTTCAGT ATTGCAGCAGTTTGGTTCTTGGGCTTTGGCTTGTGCTTAATGACTATTGG TGTTTGTTACTTCTGTCGTAAAAGAGAGCCTTATGGTTATTCACCAACAT GCTATGCCCTTTCCCTTATTCTCCTGATATTGTTCACATTTGCAGCAGTG ATTGGATGTGCAGTTCTCTACATCGGCCAGGGAAGTTTCCATCACAGCAT GTCTTCCACATTGCAGTACGTGGTACATCAAGCTGATTCCACTGTGGATA AGCTTAGGAACGTGTCAGATTATCTTGCTCAGGCTAAACAGGTTGGAATC GATCGAATTTTTCTCCCCACAAATGTTCAAACTGATATTGATGCGGCAGA AACAGATATCAATAACTCTGCTGGCACACTTGCTGACAAGACAAAAGAGA ACTCAGACAACATACAAGATCTCTTAGACTCTGCGAGGTTGGCGCTGATC ATAATAGCTGCTGTTATGCTAGTCTTGACATTTCTTGGATTTTTATTCTC AATTTTTGGAATACAGCTCCTTGTGTATATCTTGGTAATGGCAGGATGGG TTCTTGTTACTGGTGCCCTTATATTATGTGGTTCGTTCCTTGTTCTCCAT AATGCAACAGCAGACAGTTGTTTAGCAGTGAATGAATGGATCCAGTATCC AATTGCACACACGGCAATGGACGATATTCTGCCATGTGTGGACAATGCTA CTGCACAAGAAACATTTTTACGAAGCAAAGAAGTAACTTCTGAACTAGTG AATTTGGTGAACCAGGTTATCACCAACGCCTCCAACATAAACTTCGCTCC CAATTTCACCCCACTCTACTATAACCAATCTGGTCCCCTCTTGCCGCTCC TCTGCAATCCCTTCCATCCCGACATGACTGATAGACAATGTGATACTGGT GAAGTGACCCTAAGCAATGCAACACAGGTGTACGGCGGTTTCGTGTGCCA GGTTTCACCATCTGAGATATGCATGACGCAGGGGCGTTTGACCCCCACCT TCTACAACCAAGTCTCCGCCGGAATAAACGTGGCCAACGCTTTGTATAAT GATGCCCCCTCTTTGGTTGAGCTACAAGATTGCACCTTTGTTCGGGAAAC TCTAAGCGTTATATCTACGGATCATTGTCCTGGTCTAAGGCGTTACAGTA GATGGATCTATGTTGGATTGGTAATGGTCTCTTTTGCTGTCATGTTCTCT TTGATCTTCTGGATCGTGTATGGAAGAGAGCGTAGACATCGTCTGCATAG AAAAGAGTTAAAGGACTTGACTCCTACACGTGCACCACCACCAGGACAAG CACTAGCATTAGCCCAAATCCCTGAAGGAGACAAGTATAATTAA back to top
|