Vigun09g218500.1
|
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Vigun09g218500.1 vs. DB:Swiss
Match: ERF18_ARATH (Ethylene-responsive transcription factor ERF018 OS=Arabidopsis thaliana OX=3702 GN=ERF018 PE=2 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 4.366e-40 Identity = 67/100 (67.00%), Postives = 79/100 (79.00%), Query Frame = 1 Query: 10 ERDTEKCKSGEKLYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPEKAARAFDAALFCLRGRRANFNFPNTPCNVPLPVPSHHSLTPHQIQEVAAKFAN 309
E + ++ + + YKGVRKRKWGKWVSEIRLP+SRERIWLGSYD+PEKAARAFDAA FCLRG ANFNFPN P ++ + SLTP +IQE AA+FAN
Sbjct: 8 EEEKKRNTAMQSKYKGVRKRKWGKWVSEIRLPHSRERIWLGSYDTPEKAARAFDAAQFCLRGGDANFNFPNNPPSISV----EKSLTPPEIQEAAARFAN 103
BLAST of Vigun09g218500.1 vs. DB:Swiss
Match: ERF17_ARATH (Ethylene-responsive transcription factor ERF017 OS=Arabidopsis thaliana OX=3702 GN=ERF017 PE=2 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 3.458e-37 Identity = 62/87 (71.26%), Postives = 72/87 (82.76%), Query Frame = 1 Query: 49 YKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPEKAARAFDAALFCLRGRRANFNFPNTPCNVPLPVPSHHSLTPHQIQEVAAKFAN 309
YKGVRKRKWGKWVSEIRLPNSRERIWLGSYD+PEKAARAFDAAL+CLRG A FNFP+ P P+ + +L+ +I+E AA+FAN
Sbjct: 12 YKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTPEKAARAFDAALYCLRGNNAKFNFPDNP---PV-ISGGRNLSRSEIREAAARFAN 94
BLAST of Vigun09g218500.1 vs. DB:Swiss
Match: ERF16_ARATH (Ethylene-responsive transcription factor ERF016 OS=Arabidopsis thaliana OX=3702 GN=ERF016 PE=2 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 3.028e-36 Identity = 64/92 (69.57%), Postives = 73/92 (79.35%), Query Frame = 1 Query: 49 YKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPEKAARAFDAALFCLRGRRANFNFPNTPCNVPLPVPSHHSLTPHQIQEVAAKFANEDPLL 324
Y GVRKRKWGKWV+EIRLPNSR+RIWLGS+DS EKAARAFDAAL+CLRG A FNFP+ P +P SLTP QIQ VA++FA E+ LL
Sbjct: 7 YTGVRKRKWGKWVAEIRLPNSRDRIWLGSFDSAEKAARAFDAALYCLRGPGARFNFPDNPPE----IPGGRSLTPQQIQVVASRFACEEELL 94
BLAST of Vigun09g218500.1 vs. DB:Swiss
Match: ERF15_ARATH (Ethylene-responsive transcription factor ERF015 OS=Arabidopsis thaliana OX=3702 GN=ERF015 PE=2 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 2.598e-28 Identity = 52/89 (58.43%), Postives = 64/89 (71.91%), Query Frame = 1 Query: 43 KLYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPEKAARAFDAALFCLRGRRANFNFPNTPCNVPLPVPSHHSLTPHQIQEVAAKFAN 309
K Y+GVRKR WGKWVSEIR+P + RIWLGSYD+PEKAARA+DAALFC+RG + +NFP T LP S L+ IQ +A +A+
Sbjct: 25 KCYRGVRKRSWGKWVSEIRVPKTGRRIWLGSYDAPEKAARAYDAALFCIRGEKGVYNFP-TDKKPQLPEGSVRPLSKLDIQTIATNYAS 112
BLAST of Vigun09g218500.1 vs. DB:Swiss
Match: ERF12_ARATH (Ethylene-responsive transcription factor ERF012 OS=Arabidopsis thaliana OX=3702 GN=ERF012 PE=2 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 3.463e-25 Identity = 51/97 (52.58%), Postives = 59/97 (60.82%), Query Frame = 1 Query: 49 YKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPEKAARAFDAALFCLRGRRANFNFPNTPCNVPLPVPSHH----------SLTPHQIQEVAAKFAN 309
YKGVR R WG WVSEIR PN + RIWLGSY + E AARA+D AL CL+G +AN NFP + SHH L+P IQ VAA+ AN
Sbjct: 50 YKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDVALLCLKGPQANLNFPTSSS-------SHHLLDNLLDENTLLSPKSIQRVAAQAAN 139
BLAST of Vigun09g218500.1 vs. DB:Swiss
Match: ERF23_ARATH (Ethylene-responsive transcription factor ERF023 OS=Arabidopsis thaliana OX=3702 GN=ERF023 PE=2 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 2.497e-23 Identity = 45/91 (49.45%), Postives = 59/91 (64.84%), Query Frame = 1 Query: 13 RDTEKCKSGEKLYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPEKAARAFDAALFCLRGRRANFNFPNTPCNVPLPVPSHHSLTPHQIQ 285
++T + +Y GVRKR+WGKWVSEIR P + RIWLGS+ PE AA+A+D A FCL+GR+A NFP ++P P + TP IQ
Sbjct: 33 KETSSSTTRHPVYHGVRKRRWGKWVSEIREPRKKSRIWLGSFPVPEMAAKAYDVAAFCLKGRKAQLNFPEEIEDLPRP----STCTPRDIQ 119
BLAST of Vigun09g218500.1 vs. DB:Swiss
Match: ERF21_ARATH (Ethylene-responsive transcription factor ERF021 OS=Arabidopsis thaliana OX=3702 GN=ERF021 PE=2 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 6.838e-23 Identity = 41/69 (59.42%), Postives = 50/69 (72.46%), Query Frame = 1 Query: 49 YKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPEKAARAFDAALFCLRGRRANFNFPNTPCNVPLPVPS 255
Y+GVRKRKWGKWVSEIR P ++ RIWLGS+++PE AA A+D A F RGR A NFP ++P P S
Sbjct: 24 YRGVRKRKWGKWVSEIREPGTKNRIWLGSFETPEMAATAYDVAAFHFRGREARLNFPELASSLPRPADS 92
BLAST of Vigun09g218500.1 vs. DB:Swiss
Match: ERF13_ARATH (Ethylene-responsive transcription factor ERF013 OS=Arabidopsis thaliana OX=3702 GN=ERF013 PE=2 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 1.463e-22 Identity = 53/98 (54.08%), Postives = 66/98 (67.35%), Query Frame = 1 Query: 22 EKCKSGEKLYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPEKAARAFDAALFCLRGRRANFNFPNTPCNVP--LPVPSHHSLTPHQIQEVAAKFAN 309
+ CK+ K YKGVR R WG WV+EIR PN + RIWLGSY + E AARA+DAAL CL+G +AN NFPN P + + L+P IQ+VAA+ AN
Sbjct: 34 QSCKNKIKKYKGVRMRSWGSWVTEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGPKANLNFPNITTTSPFLMNIDEKTLLSPKSIQKVAAQAAN 131
BLAST of Vigun09g218500.1 vs. DB:Swiss
Match: ERF11_ARATH (Ethylene-responsive transcription factor ERF011 OS=Arabidopsis thaliana OX=3702 GN=ERF011 PE=2 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.676e-22 Identity = 44/91 (48.35%), Postives = 58/91 (63.74%), Query Frame = 1 Query: 40 EKLYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPEKAARAFDAALFCLRGRRANFNFPNTPCNVPLPVPSHHSLTPHQIQEVAAKFANE 312
E+ +KG+R RKWGKWV+EIR PN R R+WLGSY +PE AARA+D A+F LRG A NFP LP S ++ I++ A + +
Sbjct: 18 ERPFKGIRMRKWGKWVAEIREPNKRSRLWLGSYSTPEAAARAYDTAVFYLRGPTATLNFPEL-----LPCTSAEDMSAATIRKKATEVGAQ 103
BLAST of Vigun09g218500.1 vs. DB:Swiss
Match: RA210_ARATH (Ethylene-responsive transcription factor RAP2-10 OS=Arabidopsis thaliana OX=3702 GN=RAP2-10 PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 3.775e-22 Identity = 41/60 (68.33%), Postives = 47/60 (78.33%), Query Frame = 1 Query: 40 EKLYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPEKAARAFDAALFCLRGRRANFNFP 219
+K YKG+R RKWGKWV+EIR PN R RIWLGSY +PE AARA+D A+F LRG A NFP
Sbjct: 27 DKPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPEAAARAYDTAVFYLRGPSARLNFP 86 The following BLAST results are available for this feature:
BLAST of Vigun09g218500.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun09g218500.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g218500.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g218500.1; organism=Vigna unguiculata; type=mRNA; length=1351bpback to top protein sequence of Vigun09g218500.1_Vu_IT97K-499-35_v1.1 >Vigun09g218500.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g218500.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g218500.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=244bpback to top mRNA from alignment at Vu09:39240660..39242010+ Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Vigun09g218500.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g218500.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g218500.1; organism=Vigna unguiculata; type=mRNA; length=1351bp; location=Sequence derived from: Vu09:39240660..39242010+ (Vigna unguiculataback to top Coding sequence (CDS) from alignment at Vu09:39240660..39242010+ >Vigun09g218500.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g218500.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g218500.1; organism=Vigna unguiculata; type=CDS; length=732bp; location=Sequence derived from: Vu09:39240660..39242010+ (Vigna unguiculataback to top Annotated Terms
The
following terms have been associated with
this mRNA:
|