Transcript Overview
Name | Vigun09g220600.1 |
Unique Name | Vigun09g220600.1_Vu_IT97K-499-35_v1.1 |
Type | mRNA |
Organism | Vigna unguiculata (cowpea) |
Sequence length | 1304 |
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
Vigun09g220600.1 | Vigun09g220600.1_Vu_IT97K-499-35_v1.1-protein | Vigna unguiculata | polypeptide |
Vigun09g220600.1_Vu_IT97K-499-35_v1.1 | Vigun09g220600.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | polypeptide |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Vigun09g220600.1.v1.1.CDS.2 | Vigun09g220600.1.v1.1.CDS.2_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
Vigun09g220600.1.v1.1.CDS.1 | Vigun09g220600.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Vigun09g220600.1.v1.1.three_prime_UTR.1 | Vigun09g220600.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | three_prime_UTR |
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Vigun09g220600.1.v1.1.five_prime_UTR.1 | Vigun09g220600.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | five_prime_UTR |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR035940 | CAP superfamily | SUPERFAMILY | 55797 | PR-1-like | coord: 29..166 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun09g220600.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g220600.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g220600.1; organism=Vigna unguiculata; type=mRNA; length=1304bp AGAACGGAATAAAATGGACAGCTATGATCCTCTGCATTACTTAACATCTT TAAACAATATAGAATGATAATAATTTCTGTAGTCTCTTGTCCTTTTCAAA CAACATAATGGATTTTAATTGCCAATTTGAACAACTAAATATAACTCACC GACAGAAAAATTATGTAATTTGAATGGCAATAACAACTTCAAATTATTTT TTTAAGGAAATTTACTTACTGTAATCTTATATTGCAGAATCGTTGAGAAC TATGAATGTGaaaaaaaaaaaagaagaaaaaatataaaGTTGGGAAGGAC CATTCGGTTGGTGGAATTTGTTGCAGTTTATTTTGAGGTTTGAACCAGAA GGCATCAGTTCGAGGCAGACACAACGCAGATCTGTCTTGAACTTCTGTGT TCTAAAACAGCAACAATGGCAAAAACCATGACTATGTGGTATCTTTTGCT TACCCTTTCCTTCGTTTATGCTGCCACTGCTGATACTCAAAGCAAAGTAA CTAACAATCCTGCTGACAAGTTGGTAGCTGCAATAAACGAAAACAGAACA GCTCACAAGGTATCAACCTTAACAGACAACCCGGGTCTCGCATGTATTGC TCTACAATACATTAAGGCGTACCAAGGTAATTGTGATGCTGTGGGTGGAC CTGATGGGAAGAAACCTCCGGAATCTCAATTTGCAGAAGCTTTTGCTCCA AACTGTGGTGTTGAGGCATCAACTCTTGCTCCTATAACTGGTCGTTTCCT GGGGTGCCAGACCAAGTATGTACATGCACCTGAGGCATTTTCTGAGATCC TCATAAGGAACCAAAAGAGCTTGGACATACTCTACAGTAGGAACCACACT CAGCTTGGTGCTGCTGTGACAGGTACTGATGGAGGGTCTCCTTATTTCTG GTGTGTGCTGTTTAGCAGTGGCAAACCTAACCAAACCTTTACTTTGGAGG GTGGTGTGGCTAAAATAACAAAACCTGGTTGCTTTAGTGGAGCCAATGAT GAGTGCAGTGGAGCCAGTGATCATTGGTCACCACTCAATGGGATGTGGGT TTTGGCCACTTCAGTTGTGCTTGCAATGGGGTTTGGTTTAGCATTATGAG CATAAATTGAGATAAATTGTATGATTTCTACATGATTTGGAGGTAAGGTA GTCTTTGTTTGTTGTATATGAAAGGCTTGGCCTCAGCTATTCTTTTTCCC CCTTGTTTGATTTGTAATTTGAGAAGAGCTTCATTTTCCCCACTTTCTTG TTTACATATAAATTTTCTGGTATTGACTCTAGCAAATTTTCTCACGTAGT ACAA back to topprotein sequence of Vigun09g220600.1_Vu_IT97K-499-35_v1.1 >Vigun09g220600.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g220600.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g220600.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=228bp MAKTMTMWYLLLTLSFVYAATADTQSKVTNNPADKLVAAINENRTAHKVS TLTDNPGLACIALQYIKAYQGNCDAVGGPDGKKPPESQFAEAFAPNCGVE ASTLAPITGRFLGCQTKYVHAPEAFSEILIRNQKSLDILYSRNHTQLGAA VTGTDGGSPYFWCVLFSSGKPNQTFTLEGGVAKITKPGCFSGANDECSGA SDHWSPLNGMWVLATSVVLAMGFGLAL* back to topmRNA from alignment at Vu09:39438543..39441827- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Vigun09g220600.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g220600.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g220600.1; organism=Vigna unguiculata; type=mRNA; length=3285bp; location=Sequence derived from: Vu09:39438543..39441827- (Vigna unguiculata AGAACGGAATAAAATGGACAGCTATGATCCTCTGCATTACTTAACATCTT
TAAACAATATAGAATGATAATAATTTCTGTAGTCTCTTGTCCTTTTCAAA
CAACATAATGGATTTTAATTGCCAATTTGAACAACTAAATATAACTCACC
GACAGAAAAATTATGTAATTTGAATGGCAATAACAACTTCAAATTATTTT
TTTAAGGAAATTTACTTACTGTAATCTTATATTGCAGAATCGTTGAGAAC
TATGAATGTGAAAAAAAAAAAAGAAGAAAAAATATAAAGTTGGGAAGGAC
CATTCGGTTGGTGGAATTTGTTGCAGTTTATTTTGAGGTTTGAACCAGAA
GGCATCAGTTCGAGGCAGACACAACGCAGATCTGTCTTGAACTTCTGTGT
TCTAAAACAGCAACAATGGCAAAAACCATGACTATGTGGTATCTTTTGCT
TACCCTTTCCTTCGTTTATGCTGCCACTGCTGATACTCAAAGTAAGTCCA
AATCAAGTCTCTGTTTTTTCTCTATCTGCTGATTTTTGTTTCAGATTTGG
AATGCTGCTGTTAGTGTCTGGGGTACTCCAAGTTTGATCTGCATTACAAT
CTGTTTAAGATTTTTTTTTTTTAAATATTTTGACTAAGTTTTCTTGATGC
GTTCCATTGTAGCTTCTTTTCATTCTGGATTGTGTTCTTTACTTTTTAAA
TTTATCGAGTGTCTGTCTACAATGTCAGTGATTCTGTAAGGTGTTCTAAG
AGTAGATCTCAATTGCTTAGAACTTCCGTGTATATTTTTGGTCTCTCATG
GGAGATTATTTCATTTTGGCATAGAGATTGATGACATTTTGGATCTTGAA
CTATAACGGTAGAAAAAGGTAAATGGGACAAGAAAAATATGTTAAGAATG
TGAGCTGATTCTTGATTTGGACGACCGATCATGTTTGTCTTCCTTCGTCT
TTAACTAAAATTCGTTAAGAATCTTGTTTAGGTTTCCTAGTCTTGGAGTA
TTCCATCTTCTGTATATAATTGCAATAACCCATTTGAGGGTTACTGTTTT
GGAGCTAAGACAGCCATTTCCCCAAGGTTGATTTTATTAGAATATAACTT
TTTCACTATCTTTGGTGGTTCTAGTTTCAGGAAAGAAATAGAAGTTGTTG
ATATGACTATGAAACGATGAAATTGTAAAGTACATGACAATCAGGTGGCT
TTGTTTGAAACTGGAACTTTTTATGTCTGGTAAGGAACAAACAAGGGTTT
GAAAAATGATCTGCAACCAGATTTGTAGTTTCAATGTTAAGGTTTTTTGA
AATGTTTGCTACCACAGTAGTTGCATTTGTCCTTGATTTCCCGCAATGTC
AAAGATTGTGACAAAACTGTAACCATTACCGCAACCACTGCATAAAATCT
TAGAAGCAACATGAATTGACCTCTGTAAAAAATTATGTCTTTATTATTTG
AGACTCAAAATTTTCTGTCCTTCCCCTTCCATCAGCTACAGGGCTTTCGA
GAAGTGATGACTGTCATTAGGATTTCATTTATATAGCCCTCAAATGGCGA
CCTCATTGATGTTGACGTGGACTTTAGGAATTGGGAATGTGATTTGATAT
TGGTTCATAGTTGAGCATGTTTAAGCAAACAAATCTCTAGCTTTTTTTAC
CAGCCCACTGTAAATCTGTATTTCTCAGAGATGAATTGATTGTTTAAGCC
ATATTTTAGTCATCTTGGAAGATATCAAAAGGGTTGGGAATGAAGTGCAG
GAAGAAAGAAAAACTAAATTGTTGCTTTAAAAAATTTCCTGACTGATATT
GCTCTCAGCATGGTGCCAATCACCGCAATCTGCATAATATATGTCTTAAT
TAAGCTTGTGTTTGCCAGATGGTAGGTTCTTCAGCGGGGGAATATATTAA
TATTAAGCAGTTCATAATTTATTGATTGAAGTTTTTTAGTTCTTTTTCTT
TGGACTTGTCATATATTGTACGTGTTTGAGATTTCAGTTTATGTTTCACT
ACTTGTTTGTTTCTGTGTCAAACATGGATCAGAAAACCTGGTTTCCTAAC
TTTCTTACCCTTAGCTTCAGACTACATCTTCCGACATTTTCATTAATTAT
ACATACATGACTATTTCCTCAATCCAAAGCCTCCTACTCTAAATTCCTCT
TGCATTTAGTAGTATCTTCCCATAAAGAAATGTATTGAAGGTAAGAGCAT
AATGTATTAATCTGATAGTAATAGTGTACATATAGTAAATGCTAGCAATA
TATGAGTATGGCTAGCATTAAGATCCTACAAATAAATACAGTAACAAGTA
ATGTTTACAATCATTGATTGGAAATTACATTAATTACAATATTTAGTAAT
ATCAAAAAGGTAACATTGGATGCACAAAGAGTCACAAATGAAGGAATCTT
GTTTCTGATTTTCCTCACTTAGGTGTTCTTTAAATTCTCTTTTGTGACTC
GATGAACAAAACATTGTTGCAGGCAAAGTAACTAACAATCCTGCTGACAA
GTTGGTAGCTGCAATAAACGAAAACAGAACAGCTCACAAGGTATCAACCT
TAACAGACAACCCGGGTCTCGCATGTATTGCTCTACAATACATTAAGGCG
TACCAAGGTAATTGTGATGCTGTGGGTGGACCTGATGGGAAGAAACCTCC
GGAATCTCAATTTGCAGAAGCTTTTGCTCCAAACTGTGGTGTTGAGGCAT
CAACTCTTGCTCCTATAACTGGTCGTTTCCTGGGGTGCCAGACCAAGTAT
GTACATGCACCTGAGGCATTTTCTGAGATCCTCATAAGGAACCAAAAGAG
CTTGGACATACTCTACAGTAGGAACCACACTCAGCTTGGTGCTGCTGTGA
CAGGTACTGATGGAGGGTCTCCTTATTTCTGGTGTGTGCTGTTTAGCAGT
GGCAAACCTAACCAAACCTTTACTTTGGAGGGTGGTGTGGCTAAAATAAC
AAAACCTGGTTGCTTTAGTGGAGCCAATGATGAGTGCAGTGGAGCCAGTG
ATCATTGGTCACCACTCAATGGGATGTGGGTTTTGGCCACTTCAGTTGTG
CTTGCAATGGGGTTTGGTTTAGCATTATGAGCATAAATTGAGATAAATTG
TATGATTTCTACATGATTTGGAGGTAAGGTAGTCTTTGTTTGTTGTATAT
GAAAGGCTTGGCCTCAGCTATTCTTTTTCCCCCTTGTTTGATTTGTAATT
TGAGAAGAGCTTCATTTTCCCCACTTTCTTGTTTACATATAAATTTTCTG
GTATTGACTCTAGCAAATTTTCTCACGTAGTACAA back to topCoding sequence (CDS) from alignment at Vu09:39438543..39441827- >Vigun09g220600.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g220600.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g220600.1; organism=Vigna unguiculata; type=CDS; length=684bp; location=Sequence derived from: Vu09:39438543..39441827- (Vigna unguiculata ATGGCAAAAACCATGACTATGTGGTATCTTTTGCTTACCCTTTCCTTCGT TTATGCTGCCACTGCTGATACTCAAAGCAAAGTAACTAACAATCCTGCTG ACAAGTTGGTAGCTGCAATAAACGAAAACAGAACAGCTCACAAGGTATCA ACCTTAACAGACAACCCGGGTCTCGCATGTATTGCTCTACAATACATTAA GGCGTACCAAGGTAATTGTGATGCTGTGGGTGGACCTGATGGGAAGAAAC CTCCGGAATCTCAATTTGCAGAAGCTTTTGCTCCAAACTGTGGTGTTGAG GCATCAACTCTTGCTCCTATAACTGGTCGTTTCCTGGGGTGCCAGACCAA GTATGTACATGCACCTGAGGCATTTTCTGAGATCCTCATAAGGAACCAAA AGAGCTTGGACATACTCTACAGTAGGAACCACACTCAGCTTGGTGCTGCT GTGACAGGTACTGATGGAGGGTCTCCTTATTTCTGGTGTGTGCTGTTTAG CAGTGGCAAACCTAACCAAACCTTTACTTTGGAGGGTGGTGTGGCTAAAA TAACAAAACCTGGTTGCTTTAGTGGAGCCAATGATGAGTGCAGTGGAGCC AGTGATCATTGGTCACCACTCAATGGGATGTGGGTTTTGGCCACTTCAGT TGTGCTTGCAATGGGGTTTGGTTTAGCATTATGA back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: INTERPRO
Term | Definition |
IPR035940 | CAP_sf |
|