Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Species Type
Vigun09g234300.1 Vigun09g234300.1_Vu_IT97K-499-35_v1.1-protein Vigna unguiculata polypeptide Vigun09g234300.1_Vu_IT97K-499-35_v1.1 Vigun09g234300.1_Vu_IT97K-499-35_v1.1 Vigna unguiculata polypeptide
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Vigun09g234300.1.v1.1.five_prime_UTR.1 Vigun09g234300.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1 Vigna unguiculata five_prime_UTR
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Vigun09g234300.1.v1.1.CDS.1 Vigun09g234300.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1 Vigna unguiculata CDS
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Vigun09g234300.1.v1.1.three_prime_UTR.1 Vigun09g234300.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1 Vigna unguiculata three_prime_UTR
Homology
BLAST of Vigun09g234300.1 vs. DB:Swiss
Match:
MAF1_SOLLC (MFP1 attachment factor 1 OS=Solanum lycopersicum OX=4081 GN=MAF1 PE=1 SV=1)
HSP 1 Score: 141.739 bits (356), Expect = 2.589e-42
Identity = 70/94 (74.47%), Postives = 84/94 (89.36%), Query Frame = 1
Query: 127 PASVSFTIWPPTQRTRDAVINRLIETLSSQSVLSKRYGTMPPEEASAAARQIEDEAFAVASGSSTSDS-DGIEILQVYSKEISKRMLDTVKSKA 405
P + SF+IWPPTQRTRDAVINRLIE+LS+ S+LSKRYGT+P +EAS AR IE+EAFA A+GS+ SD+ DGIEILQVYSKEISKRM+DTVKS++
Sbjct: 21 PMTTSFSIWPPTQRTRDAVINRLIESLSTPSILSKRYGTLPQDEASETARLIEEEAFA-AAGSTASDADDGIEILQVYSKEISKRMIDTVKSRS 113
BLAST of Vigun09g234300.1 vs. DB:Swiss
Match:
WPP1_ARATH (WPP domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=WPP1 PE=1 SV=1)
HSP 1 Score: 140.198 bits (352), Expect = 1.206e-41
Identity = 64/104 (61.54%), Postives = 84/104 (80.77%), Query Frame = 1
Query: 124 GPASVSFTIWPPTQRTRDAVINRLIETLSSQSVLSKRYGTMPPEEASAAARQIEDEAFAVASGSSTSDSDGIEILQVYSKEISKRMLDTVKSKATTGSPAVDNG 435
P ++S IWPPTQ+TRDAVINRLIETLS++S+LSKR+G++ EEAS+ A+ IEDEA+A+AS + D DGIEIL+ YSKEISKRML++VK+K+ SP +G
Sbjct: 36 NPVTISLRIWPPTQKTRDAVINRLIETLSTESILSKRFGSLESEEASSVAKSIEDEAYAIASATVFGDDDGIEILKAYSKEISKRMLESVKAKSNVASPPPKDG 139
BLAST of Vigun09g234300.1 vs. DB:Swiss
Match:
WPP2_ARATH (WPP domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=WPP2 PE=1 SV=1)
HSP 1 Score: 137.502 bits (345), Expect = 2.537e-40
Identity = 66/114 (57.89%), Postives = 91/114 (79.82%), Query Frame = 1
Query: 127 PASVSFTIWPPTQRTRDAVINRLIETLSSQSVLSKRYGTMPPEEASAAARQIEDEAFAVASGSSTSDSDGIEILQVYSKEISKRMLDTVK--SKATTGSPAVDNGVAQTPTSEV 462
P +S IWPPTQ+TRDAV+NRLIETLS++S+LSKRYGT+ ++A+ A+ IE+EA+ VAS + +SD DGI+IL++YSKEISKRML++VK S A+ G+ +V++ A T SEV
Sbjct: 53 PGGISLRIWPPTQKTRDAVLNRLIETLSTESILSKRYGTLKSDDATTVAKLIEEEAYGVASNAVSSDDDGIKILELYSKEISKRMLESVKARSNASVGNGSVED--ANTDASEV 164
BLAST of Vigun09g234300.1 vs. DB:Swiss
Match:
WPP3_ARATH (WPP domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=WPP3 PE=2 SV=1)
HSP 1 Score: 97.0561 bits (240), Expect = 1.008e-24
Identity = 55/130 (42.31%), Postives = 85/130 (65.38%), Query Frame = 1
Query: 22 PEPQSEPQSEQDSVPPSKLSTEDQPXXXXXXSKLGPASVSFTIWPPTQRTRDAVINRLIETLSSQSVLSKRYGTMPPEEASAAARQIEDEAFAVASGSSTSDSDGIEILQVYSKEISKRMLDT--VKSKA 405
P+PQ E +S++ S S D + K G + F++WPP Q++RD V+N +I+TLS+ S+LS +YGT+ PEEASA A+ IE++A+ +AS + SDGI+ L+VY E S+RM+++ V+ KA
Sbjct: 15 PQPQLESRSDETSCLQKHRS--DATSEVTKEEKSG--GILFSVWPPCQKSRDYVVNSMIKTLSTDSILSYKYGTIKPEEASAVAKSIEEKAYDIASRFVS--SDGIKNLEVYGIETSERMIESAEVRFKA 138
BLAST of Vigun09g234300.1 vs. DB:Swiss
Match:
RAGP1_ARATH (RAN GTPase-activating protein 1 OS=Arabidopsis thaliana OX=3702 GN=RANGAP1 PE=1 SV=1)
HSP 1 Score: 74.3294 bits (181), Expect = 1.082e-14
Identity = 35/89 (39.33%), Postives = 57/89 (64.04%), Query Frame = 1
Query: 136 VSFTIWPPTQRTRDAVINRLIETLSSQSVLSKRYGTMPPEEASAAARQIEDEAFAVASGSSTS--DSDGIEILQVYSKEISKRMLDTVK 396
+S +WPP++ TR ++ R+ + +++ S+ S++YG + EEA A++IED AFA A+ + D DG + VY+KE SK MLD +K
Sbjct: 13 LSVKMWPPSKSTRLMLVERMTKNITTPSIFSRKYGLLSVEEAEQDAKRIEDLAFATANKHFQNEPDGDGTSAVHVYAKESSKLMLDVIK 101
BLAST of Vigun09g234300.1 vs. DB:Swiss
Match:
RAGP2_ARATH (RAN GTPase-activating protein 2 OS=Arabidopsis thaliana OX=3702 GN=RANGAP2 PE=1 SV=2)
HSP 1 Score: 70.8626 bits (172), Expect = 1.387e-13
Identity = 33/92 (35.87%), Postives = 59/92 (64.13%), Query Frame = 1
Query: 127 PASVSFTIWPPTQRTRDAVINRLIETLSSQSVLSKRYGTMPPEEASAAARQIEDEAFAVASGSSTS--DSDGIEILQVYSKEISKRMLDTVK 396
P + S +WPP+ TR A+I R+ SS+++ +++YG++ ++A+ A++IED AF+ A+ D DG +Q+Y+KE SK +L+ +K
Sbjct: 9 PHAFSIKLWPPSLPTRKALIERITNNFSSKTIFTEKYGSLTKDQATENAKRIEDIAFSTANQQFEREPDGDGGSAVQLYAKECSKLILEVLK 100
The following BLAST results are available for this feature:
BLAST of Vigun09g234300.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot )
Total hits: 6
500 1000 1500 2000 2500 3000 3500 4000 Expect = 2.59e-42 / Id = 74.47 Expect = 1.21e-41 / Id = 61.54 Expect = 2.54e-40 / Id = 57.89 Expect = 1.01e-24 / Id = 42.31 Expect = 1.08e-14 / Id = 39.33 Expect = 1.39e-13 / Id = 35.87 Sequence MAF1_SOLLC WPP1_ARATH WPP2_ARATH WPP3_ARATH RAGP1_ARATH RAGP2_ARATH
Match Name E-value Identity Description
MAF1_SOLLC 2.589e-42 74.47 MFP1 attachment factor 1 OS=Solanum lycopersicum O... [more] WPP1_ARATH 1.206e-41 61.54 WPP domain-containing protein 1 OS=Arabidopsis tha... [more] WPP2_ARATH 2.537e-40 57.89 WPP domain-containing protein 2 OS=Arabidopsis tha... [more] WPP3_ARATH 1.008e-24 42.31 WPP domain-containing protein 3 OS=Arabidopsis tha... [more] RAGP1_ARATH 1.082e-14 39.33 RAN GTPase-activating protein 1 OS=Arabidopsis tha... [more] RAGP2_ARATH 1.387e-13 35.87 RAN GTPase-activating protein 2 OS=Arabidopsis tha... [more]
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Sequences
The
following sequences are available for this feature:
mRNA sequence
>Vigun09g234300.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g234300.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g234300.1; organism=Vigna unguiculata; type=mRNA; length=4116bp back to top protein sequence of Vigun09g234300.1_Vu_IT97K-499-35_v1.1
>Vigun09g234300.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g234300.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g234300.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=173bp back to top mRNA from alignment at Vu09:40492346..40496461+
Legend: five_prime_UTR polypeptide CDS three_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun09g234300.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g234300.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g234300.1; organism=Vigna unguiculata; type=mRNA; length=4116bp; location=Sequence derived from: Vu09:40492346..40496461+ (Vigna unguiculataACTACTTCTTTCCTTACTAGTCTGACAGGCAGGTCTTGCCTCCAATCCAA
TTCCACTGTTTCCCTCTCCTCTCATCTCAAA ATGTCCGAACCGGAAAACG
CACCCGAACCCCAATCCGAACCCCAATCGGAGCAAGACTCCGTCCCGCCG
TCGAAGCTGTCTACTGAAGACCAACCCGCCGCTGCCGCTGCCGCCTCCAA
GCTTGGTCCCGCTAGCGTCTCCTTCACCATTTGGCCTCCCACTCAGCGCA
CGCGCGATGCCGTCATCAACCGCCTAATCGAAACCCTGTCCTCCCAGTCC
GTCCTCTCCAAGCGCTACGGGACAATGCCTCCCGAGGAGGCCTCCGCTGC
CGCGCGCCAGATCGAGGATGAGGCCTTCGCCGTCGCTAGCGGCTCCTCCA
CCTCTGATAGCGACGGGATCGAGATCCTCCAGGTTTACTCCAAGGAGATC
AGCAAACGGATGCTCGACACCGTCAAGTCTAAAGCCACAACCGGCTCTCC
CGCCGTGGATAACGGCGTTGCTCAGACCCCTACCTCCGAAGTTGCTCCTA
CCCCTGCCGCAGAGAGCGATCCTGCCGCTGCTGCCGAGTCTGAAACCTGA
TCTTTCGGGATTATAGTATATTATCTTAGGGTTCCCTTGCTGAGGGTTTA
TATTTTAATGTTATATACTCTGATGATGTTCTTTCTGTAAAACTAAGTTT
ATTTGTCGTGCAACCAATTTTCATTATATATATTATCTTGAACATCTTAG
TTTTTCTTTGTTTCCTCCAAACATTACTGTTTATGTCTCTGTTTTCGGTG
CATATTGATTGTTTATTGCAGACTCTCAGTCTTACATTCTTTTGGTAAGC
CTGCAAGTCATGAAACTCTTTATGGATGGTTAAACTTGTATACTTTTCTG
TTGCAGTATTTTCCTCTCTTGTGTTGTGCATGTGTCTTTTTCTCTTTAAG
CTTGCTTTTTTTATGTTTATACTGGTAGTAAGTTGGAATTAGATATACAA
CGAGAGAATGTAGTTCAGAGTTGTTAACTATAACCTGTGAGTAATGAGTA
ATCAATACTGATATTTTATTTGTAAATGGATAAATTTCTTGTTCAAAGTT
TGGCTTGCCGTTGTATCATGTTCTATACCCTTGTGTGACAGGTTACAACA
AAGCATGTGTGTTGTAGACCTGGGGTTTAAAGTGAAATGTGGTATTATTT
GAAAGTGACAATGGGTTGCATAGGTTTGGAGATGGGAGGAGTAAATTTTA
GATCAAAATCTGAAAAGACTTCAGGATTTCTATCTAGTCCCAGAAGGAAA
AGGCGTGCTCTTCAGCCCTTCTACAGGAATAATTAAGTTAAACTCATACA
TGGTAAGGCTTCTCTACTTAGTTGAAACATACTTAAAAAAATCTATTTAT
AGGATCCCAAAATTTGAATGCTTAGAGCTGATTGCGGATGACAAAATTTA
ATTGCTTTTTGAATTTAGAGAATGATAATGGTATATTATGCAAGAGAATG
TAGTTCATAGGTGTGCATATCATTCATGTATATAGATTCTTATTTTCATA
AGAAATATCTACTGTCTATGCGATTACTAATTTTCTTAAGTGAACTTGAC
TAGTCACCTTTAGAGGAATCTCCCCTTCAATCTTGAGACATTGTTTAAAG
AGATTGCATTTTGTATAACTCAGACATAGCTTAATAGAGATTGTTTGTTT
CATAGGCTAATAGTACTTTAGTGCAGATCCCTAAACATCTAAACATTAAA
TACATTTAATCATGAACATACTAGTATTTCCTAAGTGCATAAACTGTAAT
CATTTCCAACAATTTATTGAACACTAAAACCACAAGCTTGAGATTAAACT
TTTCCACACTTAGAATAGCAGAATAGCGACTCTTCAATGACTTGTATAAT
TAATATTCCTCATTGTGCATCAACACACAGTTATATCTATATTATCCTTT
TTCATGTGCTGTGAGGTCTTGTTGATTTCTGATTTCATGGTCCTATTCAT
CAAATTTTGGGTTGAGTCTAATATTACTGCTTACTTGATTTCAATTTTAA
ATCACCATTAGTTTCTCAGAAACAAATTCTCCTTTGTTATTAGTTGGAGT
GTCAAATTTCTACTATTGTTTGTGCCAAGTATTTGTATCTTGTTGTGACC
CATACATGCTTATATTTGAGAGTTGAACAGCTTGAAGTTTTTTTATATGC
TTTATGACTGTTTATTTGTTGTGTATTGAAGTTGTCTATACCTTATGACT
GCAATTATGATTCATGAATTCGATGATTAATCTATTTAACTAATATATTC
CCATTTGTGCTCAATGATCAGAGCAATTTGCTGGGCCATGTGTGTATTCA
GATTAAACAACTTTACCTTGGTTAATATGTCATTAGGAGCATTTTATGTT
ATCATGCACCAGTAACTTAGGGTCGTTCTGAACTGGGGAAGGCATCCTGT
ATTTTGATAATCTTTTATGGAGTTTTAGAGAATGTATTGTCTGTATTATA
TTGTGTGTTTCGATGACTGTGTCTTTGTTGTCTATTAGAGTTGTCTATAC
CATAAGACGATGCAATTATGATTGAATTTGATGATGAACCCACTGAGCTA
ATATATTTCTGTGTGTGCTCAATGATCAGAGCAATTTGCTGGGACAACGT
ACATAGTACTGTTCTGTGGATTCAGATAACACTTTACCTTGGTTAATATT
TCATTAGGAGTTTTATATGTTCTCATGCATCTGTAGCTTAGGGTGGTCTG
AACTAGAAAAACATTTCATATTTTAATAATCTCTCATGGAGTTGTAGAGA
GAGCCTATTATCTGTATTATGTATGATGTGTGCTGGTTATGAACATATTT
TGTAATAATTGTGTACTCTTTCTAGTCATTGCATTCTGAACTTATACTTT
CTGTATAAATACAAACTTACCGTGTGGATTAAGGTCTAATGGAAGAAAAT
AAAAATGAAGAAAAAAGTAGTTGAATAATTATGCAGTATTTAGAGTCCAG
ATTCAAAACAAAAAAAATGTAGCAAATCATGCATCCTTATTGTTTCATTA
TTGTTTATTCCACAATAAAGGATGACCACTACATACTCTTAAGGATGACC
ATGAAATATAGTTTTTGAGTGGTCGTATGGAAAGCAGCTCATTGGTTCGC
ATGTGTTGTATCCTGCTCTGTATTTATTGTTAGAACATGATGGCACATGT
ATCCTTGTTTGATGTCCTTTGTAACATGACTGTGTATAATGGAGTTTTGG
GAACAAAAAGAAAAAAAAAATCAGCATCTGGGTGCATGATTTTCTATTAT
ATCGGCTTCTCTTGTAAGAAAAAGGAAACTTTATATTTCTTACCAGGATT
TGGGGTGGAGGAATGGTTGGTTTTTCATGGTTCTTTTCTTACCCACAAAT
TTGCAGAATGGCAGGCGCTCGTGTCCTTATCGCAATGTTTGTCCTTATCG
CAATGTTTGGTACAGTTCTTATACTTTCTTCTCTGAGATGCTGAGAAAAA
TAGTACTAACATCTTGAATGGAAACTCTTAATCTTGGGCTACTTTCTTTA
TTTGAATTGTGATTCCATTCCTCCTTCCTCGCCTCCCTCTGACAATGCAT
TACATCTTATGTTGGCTTTGGGTAATTCTATGTTGAGGTTGTGTCTTTTG
AGCATGTGTTTAAACATAGACATTTTTTACGATTTTGTAATCAACAACCA
ATAATGTGAGTTAGAAAAAAACAATTCATTCGATGATACGTCAATCTTTT
GAGTGGCCTACTTTTACTGAAGGTTATTTGCCATTTCTATATTTCAATTT
GTGGTGATATGCAGTTGAATACTAAGCGAATGCAGTTATCTGTGTTCCAT
GGTCATGAATATGGTATAAGCTTCCAACTGTGGCTTTCCTTTCCTTTAGA
TATTTACTTTTATGTGGATTTTCAAATGCAAGATGTCAACCCCTTGGCTG
GTATGTGATTTTTTGATTCACACGGTGACTGTTCATTGTTTTTGTTATAT
TCTAACTGGACATTTTTTTTTTGAATCACTTTTGATTTTGACTCTCTATC
ACTTGTAATGGGTGTATGAACTTACAAAGTTCTATTCTAAAAAATATCAT
ACAACTTGGAATTAAG back to top Coding sequence (CDS) from alignment at Vu09:40492346..40496461+
>Vigun09g234300.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g234300.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g234300.1; organism=Vigna unguiculata; type=CDS; length=519bp; location=Sequence derived from: Vu09:40492346..40496461+ (Vigna unguiculata back to top
