Vigun09g235400.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Vigun09g235400.1 vs. DB:Swiss
Match: CCD32_ARATH (Cyclin-D3-2 OS=Arabidopsis thaliana OX=3702 GN=CYCD3-2 PE=1 SV=1) HSP 1 Score: 267.314 bits (682), Expect = 1.230e-85 Identity = 142/272 (52.21%), Postives = 186/272 (68.38%), Query Frame = 1 Query: 214 DMFC-DEQELTSLLGKE-QHNPLTTCLQTNPALQCAHREAVEWMLRVNAHYSFSALTSLLAVNYFDRFLSTIHFQDAKPWMTHLAAVACLSLAAKVEETQVPLLLDLQVEEGRYLFEAKTIKRMEILVLSTLGWKMNPPTPLSFLDYITRRLGLKDHHCWDFLRKCEGVLVSVLGDWRLMGYLPSELASATMIHVVKSVEPCLEGEYQRQLLGILGFDKEKVNECGKVLELWSGYEKQGKQCMKRKLGSVP-GSPNGVMEMSFSCDSSNEAW 1020 DMF D+ E+ SL+ KE + NP + L +EA++W+LRV +HY F++LT++LAVNYFDRF+++I Q KPWM+ L AVA LSLAAKVEE QVPLLLDLQVEE RYLFEAKTI+RME+L+LSTL W+M+P TP+SF D+I RR G K H DF RKCE +L+SV+ D R M Y PS LA+A MI V + ++PC E EYQ Q+ +L ++EKVNEC ++L + KR + V SP+GV++ DSSN +W Sbjct: 60 DMFLWDDDEILSLISKENETNPCFGEQILDGFLVSCRKEALDWVLRVKSHYGFTSLTAILAVNYFDRFMTSIKLQTDKPWMSQLVAVASLSLAAKVEEIQVPLLLDLQVEEARYLFEAKTIQRMELLILSTLQWRMHPVTPISFFDHIIRRFGSKWHQQLDFCRKCERLLISVIADTRFMRYFPSVLATAIMILVFEELKPCDEVEYQSQITTLLKVNQEKVNECYELL-------LEHNPSKKRMMNLVDQDSPSGVLDFD---DSSNSSW 321
BLAST of Vigun09g235400.1 vs. DB:Swiss
Match: CCD31_ARATH (Cyclin-D3-1 OS=Arabidopsis thaliana OX=3702 GN=CYCD3-1 PE=1 SV=3) HSP 1 Score: 254.988 bits (650), Expect = 9.503e-81 Identity = 124/230 (53.91%), Postives = 167/230 (72.61%), Query Frame = 1 Query: 193 PHVLFESDMFCDEQELTSLLGKEQHNPLTTCLQTNPALQCAHREAVEWMLRVNAHYSFSALTSLLAVNYFDRFLSTIHFQDAKPWMTHLAAVACLSLAAKVEETQVPLLLDLQVEEGRYLFEAKTIKRMEILVLSTLGWKMNPPTPLSFLDYITRRLGLKDHHCWDFLRKCEGVLVSVLGDWRLMGYLPSELASATMIHVVKSVEPCLEGEYQRQLLGILGFDKEKVNEC 882 P V+ + D+F ++++L +L KE+ L+ CL + L +EAV W+LRVNAHY FS L ++LA+ Y D+F+ + Q KPWM L +VACLSLAAKVEETQVPLLLD QVEE +Y+FEAKTI+RME+L+LSTL WKM+ TP+SF+D+I RRLGLK++ WDFL KC +L+SV+ D R +GYLPS +A+ATM+ +++ V+P YQ LLG+L KEKV C Sbjct: 48 PFVVLQQDLFWEDEDLVTLFSKEEEQGLS-CLD-DVYLSTDRKEAVGWILRVNAHYGFSTLAAVLAITYLDKFICSYSLQRDKPWMLQLVSVACLSLAAKVEETQVPLLLDFQVEETKYVFEAKTIQRMELLILSTLEWKMHLITPISFVDHIIRRLGLKNNAHWDFLNKCHRLLLSVISDSRFVGYLPSVVAAATMMRIIEQVDPFDPLSYQTNLLGVLNLTKEKVKTC 275
BLAST of Vigun09g235400.1 vs. DB:Swiss
Match: CCD33_ARATH (Cyclin-D3-3 OS=Arabidopsis thaliana OX=3702 GN=CYCD3-3 PE=2 SV=1) HSP 1 Score: 249.98 bits (637), Expect = 5.421e-79 Identity = 123/259 (47.49%), Postives = 177/259 (68.34%), Query Frame = 1 Query: 202 LFESDMFCDEQELTSLLGKEQHNPLTTCLQTNPALQCAHREAVEWMLRVNAHYSFSALTSLLAVNYFDRFLSTIHFQDAKPWMTHLAAVACLSLAAKVEETQVPLLLDLQVEEGRYLFEAKTIKRMEILVLSTLGWKMNPPTPLSFLDYITRRLGLKDHHCWDFLRKCEGVLVSVLGDWRLMGYLPSELASATMIHVVKSVEPCLEGEYQRQLLGILGFDKEKVNECGKVLELWSGYEKQGKQCMKRKLGSVPGSPNGV 978 L + DM D+ EL++L+ K++ L + C + A++W+ +V +HY F++LT+LLAVNYFDRF+++ FQ KPWM+ L A+ACLSLAAKVEE +VP LLD QVEE RY+FEAKTI+RME+LVLSTL W+M+P TP+SF D+I RR K HH +FL +CE +L+S++ D R + + PS LA+A M+ V++ ++ C E YQ QL+ +L D EKVN+C +++ S +K+ M++ P SP GV Sbjct: 49 LSDHDMLWDDDELSTLISKQEPCLYDEILDDEFLVLCREK-ALDWIFKVKSHYGFNSLTALLAVNYFDRFITSRKFQTDKPWMSQLTALACLSLAAKVEEIRVPFLLDFQVEEARYVFEAKTIQRMELLVLSTLDWRMHPVTPISFFDHIIRRYSFKSHHQLEFLSRCESLLLSIIPDSRFLSFSPSVLATAIMVSVIRDLKMCDEAVYQSQLMTLLKVDSEKVNKCYELVLDHSPSKKRMMNWMQQ-----PASPIGV 301
BLAST of Vigun09g235400.1 vs. DB:Swiss
Match: CCD41_ORYSJ (Cyclin-D4-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCD4-1 PE=2 SV=2) HSP 1 Score: 153.68 bits (387), Expect = 4.629e-42 Identity = 97/237 (40.93%), Postives = 136/237 (57.38%), Query Frame = 1 Query: 322 EAVEWMLRVNAHYSFSALTSLLAVNYFDRFLSTIHFQDAKPWMTHLAAVACLSLAAKVEETQVPLLLDLQVEEGRYLFEAKTIKRMEILVLSTLGWKMNPPTPLSFLDYITRRLGLKDHHCWDFLRKCEGVLVSVLGDWRLMGYLPSELASATMIHVVKSVEPCLEGEYQRQLLGILGFDKEKVNECGKVLELWS-GYEKQGKQCMKRKLGSVPGSPNGVME----MSFSCDSSNEA 1017 +A++W+ +V+++YSF+ LT+ LAVNY DRFLS D K WMT L AVACLSLAAK+EET VP LDLQV E RY+FEAKTI+RME+LVLSTL W+M TP S++DY R L D +++ + +G+ PSE+A+A VV GE + +KE+++ C +V++ + K S+P SP GV++ +S+ D S A Sbjct: 105 DAIDWIWKVHSYYSFAPLTACLAVNYLDRFLSLYQLPDGKDWMTQLLAVACLSLAAKMEETDVPQSLDLQVGEERYVFEAKTIQRMELLVLSTLKWRMQAVTPFSYVDYFLRELNGGDPPSGRSALLSSELILCIARGTECLGFRPSEIAAAVAAAVV--------GEEHAAFSHV---NKERMSHCQEVIQAMELIHPKPSSPSRVFVSSSIPRSPTGVLDAAGCLSYRSDDSAVA 330
BLAST of Vigun09g235400.1 vs. DB:Swiss
Match: CCD21_ARATH (Cyclin-D2-1 OS=Arabidopsis thaliana OX=3702 GN=CYCD2-1 PE=1 SV=3) HSP 1 Score: 142.51 bits (358), Expect = 8.059e-38 Identity = 82/229 (35.81%), Postives = 136/229 (59.39%), Query Frame = 1 Query: 322 EAVEWMLRVNAHYSFSALTSLLAVNYFDRFLSTIHFQDAKPWMTHLAAVACLSLAAKVEETQVPLLLDLQVEEGRYLFEAKTIKRMEILVLSTLGWKMNPPTPLSFLDYITRRLGLKDHHCWDFLRKCEGVLVSVLGDWRLMGYLPSELASATMIHVVKSVEP-CLEGEYQRQLLGILGFDKEKVNECGKVLELWSGYEKQ-----GKQCMKRKLGSVPGSPNGVMEMS 990 +A++W+L+V AHY F L L++NY DRFL++ K W L AV+CLSLA+K+EET VP ++DLQVE+ +++FEAKTIKRME+LV++TL W++ TP SF+DY ++ H + + + +++ + + PSE+A+A + V S E C++ E + L ++ +E+V C ++ +G E ++ + + +VP SP GV+E + Sbjct: 99 QALDWILKVCAHYHFGHLCICLSMNYLDRFLTSYELPKDKDWAAQLLAVSCLSLASKMEETDVPHIVDLQVEDPKFVFEAKTIKRMELLVVTTLNWRLQALTPFSFIDYFVDKIS--GHVSENLIYRSSRFILNTTKAIEFLDFRPSEIAAAAAVSVSISGETECIDEE--KALSSLIYVKQERVKRCLNLMRSLTGEENVRGTSLSQEQARVAVRAVPASPVGVLEAT 323
BLAST of Vigun09g235400.1 vs. DB:Swiss
Match: CCD23_ORYSJ (Putative cyclin-D2-3 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCD2-3 PE=3 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 4.676e-37 Identity = 80/227 (35.24%), Postives = 127/227 (55.95%), Query Frame = 1 Query: 229 EQELTSLLGKEQHNPLTTCLQTNPALQCAHREAVEWMLRVNAHYSFSALTSLLAVNYFDRFLSTIHFQ--DAKPWMTHLAAVACLSLAAKVEETQVPLLLDLQVEEGRYLFEAKTIKRMEILVLSTLGWKMNPPTPLSFLDYITRRLGLKDHHCWDFLRKCEGVLVSVLGDWRLMGYLPSELASATMIHVVKSVEPCLE--GEYQRQLLGILGFDKEKVNECGKVLE 897 E+E+ ++ + LT L C A++W+ +V A+YSF L + LAVNY DRFLS++ F + PWM L VACLSLAAK+EET P LDLQV Y+F+A+TI RMEI+VL+TL W+M TP +++ + ++ + + + +C +++S + + + PSE+A+A + VV L+ G + L + DK+ V C + ++ Sbjct: 76 EKEVEQMVETARGEYLTKLSNGGIELSC-RIAAIDWICKVQAYYSFGPLCAYLAVNYLDRFLSSVEFSVTNDMPWMQQLLIVACLSLAAKMEETAAPGTLDLQVCNPEYVFDAETIHRMEIIVLTTLKWRMQAVTPFTYIGHFLDKINEGNRITSELISRCTEIILSTMKATVFLRFRPSEIATAVALSVVADGGRVLDFGGVLESSKLPV---DKDNVGRCHQAMQ 298
BLAST of Vigun09g235400.1 vs. DB:Swiss
Match: CCD11_ARATH (Cyclin-D1-1 OS=Arabidopsis thaliana OX=3702 GN=CYCD1-1 PE=1 SV=3) HSP 1 Score: 138.658 bits (348), Expect = 1.527e-36 Identity = 77/207 (37.20%), Postives = 113/207 (54.59%), Query Frame = 1 Query: 286 LQTNPALQCAHREAVEWMLRVNAHYSFSALTSLLAVNYFDRFLSTIHFQDAKPWMTHLAAVACLSLAAKVEETQVPLLLDLQVEEGRYLFEAKTIKRMEILVLSTLGWKMNPPTPLSFLDYITRRLGLKDHHCWDFLRKCEGVLVSVLGDWRLMGYLPSELASATMIHVVKSVEPCLE---GEYQRQLLGILGFDKEKVNECGKVLE 897 QT A ++V W+L+V A+Y+F LT+ LAVNY DRFL + W L AVACLSLAAK+EE VP L D QV +YLFEAKTIKRME+LVLS L W++ TP F+ + ++ F+ +++S + + + Y PS +A+A ++ V + P L ++ G KEK+ C ++++ Sbjct: 72 FQTRSLDASAREDSVAWILKVQAYYNFQPLTAYLAVNYMDRFLYARRLPETSGWPMQLLAVACLSLAAKMEEILVPSLFDFQVAGVKYLFEAKTIKRMELLVLSVLDWRLRSVTPFDFISFFAYKIDPSGTFLGFFISHATEIILSNIKEASFLEYWPSSIAAAAILCVANEL-PSLSSVVNPHESPETWCDGLSKEKIVRCYRLMK 277
BLAST of Vigun09g235400.1 vs. DB:Swiss
Match: CCD42_ORYSJ (Cyclin-D4-2 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCD4-2 PE=2 SV=2) HSP 1 Score: 139.428 bits (350), Expect = 2.201e-36 Identity = 74/192 (38.54%), Postives = 114/192 (59.38%), Query Frame = 1 Query: 322 EAVEWMLRVNAHYSFSALTSLLAVNYFDRFLSTIHFQDAKPWMTHLAAVACLSLAAKVEETQVPLLLDLQVEEGRYLFEAKTIKRMEILVLSTLGWKMNPPTPLSFLDYITRRLGLKDHHCWDFLRKCEGVLVSVLGDWRLMGYLPSELASATMIHVVKSVEPCLEGEYQRQLLGILGFDKEKVNECGKVLE 897 EA+ W+ V +Y+FS++T+ LAVNY DRFLS + + WMT L +VACLS+AAK+EET VP LDLQ+ E R+LFE +TI RME+LVL+ L W+M TP S++DY R+L + +L + +++ + + + PSE+A+A V +E + + DK +V +C + ++ Sbjct: 112 EAIGWIWEVYTYYNFSSVTAYLAVNYLDRFLSQYELPEGRDWMTQLLSVACLSIAAKMEETVVPQCLDLQIGEPRFLFEVETIHRMELLVLTNLNWRMQAVTPFSYIDYFLRKLNSGNAAPRSWLLRSSELILRIAAGTGFLEFRPSEIAAAVAATVAGEATGVVEEDIAEAFTHV---DKGRVLQCQEAIQ 300
BLAST of Vigun09g235400.1 vs. DB:Swiss
Match: CCD22_ORYSJ (Cyclin-D2-2 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCD2-2 PE=2 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 3.959e-36 Identity = 72/186 (38.71%), Postives = 111/186 (59.68%), Query Frame = 1 Query: 226 DEQELTSLLGKEQ--HNPLTTCLQTNP--ALQCAHR-EAVEWMLRVNAHYSFSALTSLLAVNYFDRFLSTIHFQDAKPWMTHLAAVACLSLAAKVEETQVPLLLDLQVEEGRYLFEAKTIKRMEILVLSTLGWKMNPPTPLSFLDYITRRLGLKDHHCWDFLRKCEGVLVSVLGDWRLMGYLPSEL 768 D E +LL +++ H P L+ L+C+ R +A++W+ +V+++Y+F L+ LAVNY DRFLS+ + + WM L +V+CLSLA K+EET VPL +DLQV + Y+FEA+ IKRME++V+ TL W++ TP SF+ Y + + C + V L D R + + PSE+ Sbjct: 60 DSDEFVALLVEKEMDHQPQRGYLEKLELGGLECSWRKDAIDWICKVHSYYNFGPLSLYLAVNYLDRFLSSFNLPHDESWMQQLLSVSCLSLATKMEETVVPLPMDLQVFDAEYVFEARHIKRMELIVMKTLKWRLQAVTPFSFIGYFLDKFNEGKPPSYTLASWCSDLTVGTLKDSRFLSFRPSEI 245
BLAST of Vigun09g235400.1 vs. DB:Swiss
Match: CCD31_ORYSJ (Cyclin-D3-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCD3-1 PE=2 SV=2) HSP 1 Score: 137.502 bits (345), Expect = 4.008e-36 Identity = 90/262 (34.35%), Postives = 141/262 (53.82%), Query Frame = 1 Query: 238 LTSLLGKE--QHNPLTTCLQT---NPA---LQCAHREAVEWMLRVNAHYSFSALTSLLAVNYFDRFLSTIHFQDAKPWMTHLAAVACLSLAAKVEETQVPLLLDLQVEEGRYLFEAKTIKRMEILVLSTLGWKMNPPTPLSFLDYITRRLGLKDHHCWDFLRKCEGVLVSVLGDWRLMGYLPSELASATMIHVVKSVEPCLEGEYQRQLLGILGFDKEKVNECGKVLELWSGYEKQGKQCMKRKLGSV---PGSPNGVMEMS 990 + +LLG+E QH P+ LQ P L +A++W+ +V+ Y F LT++L+VNY DRFLS + MT L AVA LSLAAK+EET VP LDLQV + +Y+FE +TIKRME+ VL+ L W+M T SF+DY + D L + +++S + + PSE+A++ + ++ E + ++R KE+V C ++++ + + M++ GSV P SP GV++ + Sbjct: 56 IEALLGREEQQHIPMEGYLQRLLLQPDGLDLVAVRSDAIDWIWKVHELYKFGPLTAVLSVNYLDRFLSVFDLPQEEACMTQLLAVASLSLAAKMEETVVPHPLDLQVCDAKYVFETRTIKRMELAVLNALKWRMQAVTACSFIDYYLHKFNDDDTPSTSALSRSVDLILSTCKVAEFLVFRPSEIAASVALVALEEHETSM---FERVATCYKNLKKERVLRCYEMIQ----DKIIMRNIMRQSAGSVFSIPKSPIGVLDAA 310 The following BLAST results are available for this feature:
BLAST of Vigun09g235400.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun09g235400.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g235400.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g235400.1; organism=Vigna unguiculata; type=mRNA; length=2050bpback to top protein sequence of Vigun09g235400.1_Vu_IT97K-499-35_v1.1 >Vigun09g235400.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g235400.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g235400.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=373bpback to top mRNA from alignment at Vu09:40592031..40594455- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Vigun09g235400.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g235400.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g235400.1; organism=Vigna unguiculata; type=mRNA; length=2425bp; location=Sequence derived from: Vu09:40592031..40594455- (Vigna unguiculataback to top Coding sequence (CDS) from alignment at Vu09:40592031..40594455- >Vigun09g235400.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g235400.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g235400.1; organism=Vigna unguiculata; type=CDS; length=1119bp; location=Sequence derived from: Vu09:40592031..40594455- (Vigna unguiculataback to top |