Vigun09g236200.1
|
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Vigun09g236200.1 vs. DB:Swiss
Match: ERF10_ARATH (Ethylene-responsive transcription factor ERF010 OS=Arabidopsis thaliana OX=3702 GN=ERF010 PE=2 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 5.878e-50 Identity = 80/105 (76.19%), Postives = 89/105 (84.76%), Query Frame = 1
Query: 85 QDKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPELL----FQDDDVSTQEGNMSADCIRKKATQVGARVDALQTALQ 387
+D+PY+GIRMRKWGKWVAEIREPNKRSR+WLGSYSTP AAARAYDTAVFYLRGP+ARLNFPELL F D+D MSA IRKKAT+VGA+VDAL TA+Q
Sbjct: 17 RDRPYKGIRMRKWGKWVAEIREPNKRSRLWLGSYSTPEAAARAYDTAVFYLRGPTARLNFPELLPGEKFSDED-------MSAATIRKKATEVGAQVDALGTAVQ 114
BLAST of Vigun09g236200.1 vs. DB:Swiss
Match: RAP21_ARATH (Ethylene-responsive transcription factor RAP2-1 OS=Arabidopsis thaliana OX=3702 GN=RAP2-1 PE=2 SV=1) HSP 1 Score: 154.451 bits (389), Expect = 1.584e-47 Identity = 81/128 (63.28%), Postives = 95/128 (74.22%), Query Frame = 1
Query: 91 KPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPELLFQDDD--VSTQEGNMSADCIRKKATQVGARVDALQTALQXXXXXXXXXXXXXXDKPDLNEYPKPED 468
KPYRGIR RKWGKWVAEIREPNKRSR+WLGSY+T +AAARAYD AVFYLRGPSARLNFP+LL Q++D + +M A IR+KA +VGARVDAL + S +HS KPDLN+ P+ D
Sbjct: 29 KPYRGIRRRKWGKWVAEIREPNKRSRLWLGSYTTDIAAARAYDVAVFYLRGPSARLNFPDLLLQEEDHLSAATTADMPAALIREKAAEVGARVDALLASAAPSMAHSTPPVI----KPDLNQIPESGD 152
BLAST of Vigun09g236200.1 vs. DB:Swiss
Match: RA210_ARATH (Ethylene-responsive transcription factor RAP2-10 OS=Arabidopsis thaliana OX=3702 GN=RAP2-10 PE=2 SV=1) HSP 1 Score: 152.91 bits (385), Expect = 2.228e-46 Identity = 77/105 (73.33%), Postives = 84/105 (80.00%), Query Frame = 1
Query: 85 QDKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPELL------FQDDDVSTQEGNMSADCIRKKATQVGARVDALQTA 381
+DKPY+GIRMRKWGKWVAEIREPNKRSRIWLGSYSTP AAARAYDTAVFYLRGPSARLNFPELL G+MSA IR+KA +VGA+VDAL+ A
Sbjct: 26 RDKPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPEAAARAYDTAVFYLRGPSARLNFPELLAGVTVTGGGGGGVNGGGDMSAAYIRRKAAEVGAQVDALEAA 130
BLAST of Vigun09g236200.1 vs. DB:Swiss
Match: ERF08_ARATH (Ethylene-responsive transcription factor ERF008 OS=Arabidopsis thaliana OX=3702 GN=ERF008 PE=2 SV=1) HSP 1 Score: 151.369 bits (381), Expect = 4.839e-46 Identity = 81/139 (58.27%), Postives = 98/139 (70.50%), Query Frame = 1
Query: 91 KPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPELL--FQDDDVSTQEGNMSADCIRKKATQVGARVDALQTALQXXXXXXX-----------XXXXXXXDKPDLNEYPKPED 468
KPY+GIRMRKWGKWVAEIREPNKRSRIWLGSY+TP AAARAYDTAVFYLRGPSARLNFPELL + + G++SA IR+KA +VGA+VDAL + ++ S + S ++ DLN+ P PE+
Sbjct: 26 KPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYATPEAAARAYDTAVFYLRGPSARLNFPELLAGLTVSNGGGRGGDLSAAYIRRKAAEVGAQVDALGATVVVNTGGENRGDYEKIENCRKSGNGSLERVDLNKLPDPEN 164
BLAST of Vigun09g236200.1 vs. DB:Swiss
Match: RAP29_ARATH (Ethylene-responsive transcription factor RAP2-9 OS=Arabidopsis thaliana OX=3702 GN=RAP2-9 PE=2 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 1.763e-45 Identity = 75/103 (72.82%), Postives = 82/103 (79.61%), Query Frame = 1
Query: 64 KRKQQHHQDKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPELLFQD-DDVSTQEGNMSADCIRKKATQVGARVDA 369
KR +K Y+GIRMRKWGKWVAEIREPNKRSRIWLGSY T VAAARAYDTAVFYLRGPSARLNFPE +F+D + G+MS IRKKA +VGARVDA
Sbjct: 25 KRNLISSNEKRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYKTAVAAARAYDTAVFYLRGPSARLNFPEEVFKDGNGGEGLGGDMSPTLIRKKAAEVGARVDA 127
BLAST of Vigun09g236200.1 vs. DB:Swiss
Match: ERF11_ARATH (Ethylene-responsive transcription factor ERF011 OS=Arabidopsis thaliana OX=3702 GN=ERF011 PE=2 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 4.059e-45 Identity = 80/137 (58.39%), Postives = 98/137 (71.53%), Query Frame = 1
Query: 76 QHHQDKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPELLFQDDDVSTQEGNMSADCIRKKATQVGARVDAL-QTALQXXXXXXXXXXX-----XXXDKPDLNEYPKPED 468
+ +++P++GIRMRKWGKWVAEIREPNKRSR+WLGSYSTP AAARAYDTAVFYLRGP+A LNFPELL T +MSA IRKKAT+VGA+VDA+ T +Q++ S + DLN+ P PE+
Sbjct: 14 KMKRERPFKGIRMRKWGKWVAEIREPNKRSRLWLGSYSTPEAAARAYDTAVFYLRGPTATLNFPELL-----PCTSAEDMSAATIRKKATEVGAQVDAIGATVVQNNKRRRVFSQKRDFGGGLLELVDLNKLPDPEN 145
BLAST of Vigun09g236200.1 vs. DB:Swiss
Match: ERF39_ARATH (Ethylene-responsive transcription factor ERF039 OS=Arabidopsis thaliana OX=3702 GN=ERF039 PE=2 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 4.949e-25 Identity = 44/89 (49.44%), Postives = 60/89 (67.42%), Query Frame = 1
Query: 16 LRDCCSSNSTTNRNTKKRKQQHHQDKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPELLFQ 282
LR + + TK ++ + +RG+RMR+WGKWV+EIREP K+SRIWLG++STP AARA+D A ++G SA LNFPEL +
Sbjct: 13 LRSPVPEKTGKSSKTKNEQKGVSKQPNFRGVRMRQWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALAIKGGSAHLNFPELAYH 101
BLAST of Vigun09g236200.1 vs. DB:Swiss
Match: ERF21_ARATH (Ethylene-responsive transcription factor ERF021 OS=Arabidopsis thaliana OX=3702 GN=ERF021 PE=2 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 2.210e-24 Identity = 41/59 (69.49%), Postives = 47/59 (79.66%), Query Frame = 1
Query: 97 YRGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPEL 273
YRG+R RKWGKWV+EIREP ++RIWLGS+ TP AA AYD A F+ RG ARLNFPEL
Sbjct: 24 YRGVRKRKWGKWVSEIREPGTKNRIWLGSFETPEMAATAYDVAAFHFRGREARLNFPEL 82
BLAST of Vigun09g236200.1 vs. DB:Swiss
Match: DREB3_ARATH (Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=DREB3 PE=2 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 1.872e-23 Identity = 46/86 (53.49%), Postives = 58/86 (67.44%), Query Frame = 1
Query: 22 DCCSSNSTTNRNTKKRKQQHHQDKP--YRGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPEL 273
D S S ++ KK K+ K YRG+RMR WGKWV+EIREP K+SRIWLG++ TP AARA+D A ++G +A LNFPEL
Sbjct: 24 DSVSDKSKAEQSEKKTKRGRDSGKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGTAAILNFPEL 109
BLAST of Vigun09g236200.1 vs. DB:Swiss
Match: ERF12_ARATH (Ethylene-responsive transcription factor ERF012 OS=Arabidopsis thaliana OX=3702 GN=ERF012 PE=2 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 2.069e-23 Identity = 39/57 (68.42%), Postives = 47/57 (82.46%), Query Frame = 1
Query: 97 YRGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFP 267
Y+G+RMR WG WV+EIR PN+++RIWLGSYST AAARAYD A+ L+GP A LNFP
Sbjct: 50 YKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDVALLCLKGPQANLNFP 106 The following BLAST results are available for this feature:
BLAST of Vigun09g236200.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun09g236200.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g236200.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g236200.1; organism=Vigna unguiculata; type=mRNA; length=1332bpback to top protein sequence of Vigun09g236200.1_Vu_IT97K-499-35_v1.1 >Vigun09g236200.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g236200.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g236200.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=157bpback to top mRNA from alignment at Vu09:40692386..40693717+ Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Vigun09g236200.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g236200.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g236200.1; organism=Vigna unguiculata; type=mRNA; length=1332bp; location=Sequence derived from: Vu09:40692386..40693717+ (Vigna unguiculataback to top Coding sequence (CDS) from alignment at Vu09:40692386..40693717+ >Vigun09g236200.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g236200.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g236200.1; organism=Vigna unguiculata; type=CDS; length=471bp; location=Sequence derived from: Vu09:40692386..40693717+ (Vigna unguiculataback to top Annotated Terms
The
following terms have been associated with
this mRNA:
|