Vigun09g256400.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Vigun09g256400.1 vs. DB:Swiss
Match: ATL23_ARATH (E3 ubiquitin-protein ligase ATL23 OS=Arabidopsis thaliana OX=3702 GN=ATL23 PE=1 SV=2) HSP 1 Score: 147.517 bits (371), Expect = 4.045e-45 Identity = 77/136 (56.62%), Postives = 94/136 (69.12%), Query Frame = 1 Query: 1 MIDSVLLALFLPCLGMTAVFIVYMCLLWYATTRHHPSGN-GLPVKQVANKGLSPLELEKLPKITGKELVL---GTECAVCLDEIEGEQPARLVPGCNHGFHVQCADTWLSNHPLCPVCRTKLD---PQIFTSHNPC 387 MI +V +AL LPC+GM VF++Y+ LLW +T R PVK V KGLS LELEK+PK+TG+EL + TECAVCL++IE Q RLVPGCNHGFH CADTWLSNH +CPVCR +L PQ + +PC Sbjct: 28 MIATVFMALLLPCVGMCIVFLIYLFLLWCSTRRRIERLRFAEPVKPVTGKGLSVLELEKIPKLTGRELAVIARSTECAVCLEDIESGQSTRLVPGCNHGFHQLCADTWLSNHTVCPVCRAELAPNLPQCNENQSPC 163
BLAST of Vigun09g256400.1 vs. DB:Swiss
Match: ATL40_ARATH (RING-H2 finger protein ATL40 OS=Arabidopsis thaliana OX=3702 GN=ATL40 PE=2 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 3.106e-17 Identity = 39/80 (48.75%), Postives = 49/80 (61.25%), Query Frame = 1 Query: 127 VKQVANKGLSPLELEKLPK-ITG-KELVLGTECAVCLDEIEGEQPARLVPGCNHGFHVQCADTWLSNHPLCPVCRTKLDP 360 V Q +GL L + LP + G K V GTECAVCL +E + AR++P C H FHV C DTWL+ CPVCRT+ +P Sbjct: 68 VSQPPKRGLDSLVIASLPTFVVGIKNDVAGTECAVCLSLLEEKDNARMLPNCKHVFHVSCVDTWLTTQSTCPVCRTEAEP 147
BLAST of Vigun09g256400.1 vs. DB:Swiss
Match: ATL43_ARATH (RING-H2 finger protein ATL43 OS=Arabidopsis thaliana OX=3702 GN=ATL43 PE=2 SV=2) HSP 1 Score: 76.6406 bits (187), Expect = 3.597e-16 Identity = 34/79 (43.04%), Postives = 46/79 (58.23%), Query Frame = 1 Query: 142 NKGLSPLELEKLP-----KITGKELVLGTECAVCLDEIEGEQPARLVPGCNHGFHVQCADTWLSNHPLCPVCRTKLDPQ 363 N G+ +E LP ++G + G ECAVCL E + RL+P C H FHV+C DTWL H CP+CR ++DP+ Sbjct: 118 NSGIDRSVIESLPVFRFGALSGHKD--GLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPE 194
BLAST of Vigun09g256400.1 vs. DB:Swiss
Match: ATL41_ARATH (E3 ubiquitin-protein ligase ATL41 OS=Arabidopsis thaliana OX=3702 GN=ATL41 PE=1 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 5.316e-16 Identity = 42/119 (35.29%), Postives = 61/119 (51.26%), Query Frame = 1 Query: 43 GMTAVFIVYMCLLWYAT---TRHHPSGNGLPVK-----QVANKGLSPLELEKLPKIT----GKELVLGTECAVCLDEIEGEQPARLVPGCNHGFHVQCADTWLSNHPLCPVCRTKLDPQ 363 ++ V ++ L YA R + GLPV ++ +GL+P + LP T TECAVCL ++ + AR +P C H FHV C DTWL+ CPVCRT+++P+ Sbjct: 38 SLSGVILIVFALHLYARFVLRRRREAFRGLPVIFRHPFEMPKRGLNPTVIASLPTFTVGATDGVAASATECAVCLSVLKEQDKARELPNCKHIFHVDCVDTWLTTCSTCPVCRTEVEPR 156
BLAST of Vigun09g256400.1 vs. DB:Swiss
Match: ATL54_ARATH (RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2) HSP 1 Score: 75.0998 bits (183), Expect = 1.203e-15 Identity = 28/52 (53.85%), Postives = 37/52 (71.15%), Query Frame = 1 Query: 190 GKELVLGTECAVCLDEIEGEQPARLVPGCNHGFHVQCADTWLSNHPLCPVCR 345 G L+ T+C VCL+E E ++ RL+P CNH FH+ C DTWLS+H CP+CR Sbjct: 168 GDGLIERTDCPVCLNEFEEDESLRLLPKCNHAFHISCIDTWLSSHTNCPLCR 219
BLAST of Vigun09g256400.1 vs. DB:Swiss
Match: ATL78_ARATH (RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.378e-15 Identity = 44/119 (36.97%), Postives = 63/119 (52.94%), Query Frame = 1 Query: 1 MIDSVLLALFLPCLGMTAVFIVYMCLLWYATTRHHPSGNGLPVKQVANKGLSPLELEKLPKIT-GKELVL---GTECAVCLDEIEGEQPARLVPGCNHGFHVQCADTWLSNHPLCPVCR 345 M+ SVLL + LG+ + I+ L G+ PV+ + N G+ L+ ++ EL L TECA+CL E E+ +L+P C+HGFHV+C D WLS+H CP CR Sbjct: 58 MVLSVLLCALVCSLGLNS--IIRCALRCSNLVPSEAGGDNYPVR-LTNTGVKRKALKSFQTVSYSTELNLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCIDKWLSSHSSCPTCR 173
BLAST of Vigun09g256400.1 vs. DB:Swiss
Match: ATL32_ARATH (RING-H2 finger protein ATL32 OS=Arabidopsis thaliana OX=3702 GN=ATL32 PE=2 SV=3) HSP 1 Score: 73.1738 bits (178), Expect = 3.776e-15 Identity = 45/127 (35.43%), Postives = 66/127 (51.97%), Query Frame = 1 Query: 10 SVLLALFLPCLGMTAVFIVYMCLLWYATTRHHPSGNGLPVKQVANKG------LSPLELEKLPKI---TGKELVLGT---ECAVCLDEIEGEQPARLVPGCNHGFHVQCADTWLSNHPLCPVCRTKL 354 +VL+ LF G+ +V+I + R +P + + AN G L +E P + KE +G+ ECA+CL+E+E + RL+P CNH FH+ C DTWL +H CPVCR+ L Sbjct: 51 AVLVTLFF-LTGLLSVYIRHCA-------RSNPDSSTRYFRNRANDGSSRRGGLDNAVVESFPVFAYSSVKESKIGSKDLECAICLNELEDHETVRLLPICNHLFHIDCIDTWLYSHATCPVCRSNL 169
BLAST of Vigun09g256400.1 vs. DB:Swiss
Match: ATL3_ARATH (RING-H2 finger protein ATL3 OS=Arabidopsis thaliana OX=3702 GN=ATL3 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 5.519e-15 Identity = 35/83 (42.17%), Postives = 50/83 (60.24%), Query Frame = 1 Query: 136 VANKGLSPLELEKLPKITGKELV--LGTECAVCLDEIEGEQPARLVPGCNHGFHVQCADTWLSNHPLCPVCR-TKLDPQIFTS 375 ++N GL+ EL LP + ++ G EC++CL E+ ARL+P CNH FHV+C D W +H CP+CR T L P+ +S Sbjct: 98 LSNTGLTSFELSSLPIVFFRQDSCKDGLECSICLSELVKGDKARLLPKCNHSFHVECIDMWFQSHSTCPICRNTVLGPEQASS 180
BLAST of Vigun09g256400.1 vs. DB:Swiss
Match: ATL8_ARATH (RING-H2 finger protein ATL8 OS=Arabidopsis thaliana OX=3702 GN=ATL8 PE=2 SV=2) HSP 1 Score: 70.4774 bits (171), Expect = 7.784e-15 Identity = 47/125 (37.60%), Postives = 60/125 (48.00%), Query Frame = 1 Query: 1 MIDSVLLALFLPCLGMTAVFIVYMCLLWYATTRHHPSGNGLPVKQVANKGLSPLELEKLPKIT-------GKELVLGTECAVCLDEIEGEQPARLVPGCNHGFHVQCADTWLSNHPLCPVCRTKL 354 +I +VLL +G+ AV L +R+ P ANKGL L LPK+T ++LV ECA+CL E R++P C HGFHV C DTWL +H CP CR L Sbjct: 30 LILAVLLCALTCIIGLIAV--SRCAWLRRIASRNRSDQTHPPPVAAANKGLKKKVLRSLPKLTYSPDSPPAEKLV---ECAICLTEFAAGDELRVLPQCGHGFHVSCIDTWLGSHSSCPSCRQIL 149
BLAST of Vigun09g256400.1 vs. DB:Swiss
Match: ATL80_ARATH (RING-H2 finger protein ATL80 OS=Arabidopsis thaliana OX=3702 GN=ATL80 PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.120e-14 Identity = 37/81 (45.68%), Postives = 43/81 (53.09%), Query Frame = 1 Query: 124 PVKQVANKGLSPLELEKLPKIT----GKELVLGTECAVCLDEIEGEQPARLVPGCNHGFHVQCADTWLSNHPLCPVCRTKL 354 P ANKGL L+ LPK+T E ECA+CL E R++P C HGFHV C DTWL +H CP CR L Sbjct: 76 PPVAAANKGLKKKVLQSLPKLTFSPESPESEKFAECAICLAEFSAGDELRVLPQCGHGFHVACIDTWLGSHSSCPSCRQIL 156 The following BLAST results are available for this feature:
BLAST of Vigun09g256400.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun09g256400.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g256400.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g256400.1; organism=Vigna unguiculata; type=mRNA; length=798bpback to top protein sequence of Vigun09g256400.1_Vu_IT97K-499-35_v1.1 >Vigun09g256400.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g256400.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g256400.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=130bpback to top mRNA from alignment at Vu09:42239819..42240616+ Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Vigun09g256400.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g256400.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g256400.1; organism=Vigna unguiculata; type=mRNA; length=798bp; location=Sequence derived from: Vu09:42239819..42240616+ (Vigna unguiculataback to top Coding sequence (CDS) from alignment at Vu09:42239819..42240616+ >Vigun09g256400.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g256400.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g256400.1; organism=Vigna unguiculata; type=CDS; length=390bp; location=Sequence derived from: Vu09:42239819..42240616+ (Vigna unguiculataback to top |