Vigun09g256400.1

Transcript Overview
NameVigun09g256400.1
Unique NameVigun09g256400.1_Vu_IT97K-499-35_v1.1
TypemRNA
OrganismVigna unguiculata (cowpea)
Sequence length798
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vu09supercontigVu09:42239819..42240616 +Vigna unguiculata L. Walp IT97K-499-35 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-15
InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-17
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vuvuL158Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vuvuL289Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vuvuL376Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
psvuL515Pisum sativum Cameor genome v1aPisum sativum
psvuL518Pisum sativum Cameor genome v1aPisum sativum
psvuL520Pisum sativum Cameor genome v1aPisum sativum
psvuL651Pisum sativum Cameor genome v1aPisum sativum
pvvuL067Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
crvuL449Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
crvuL570Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvvuL788Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
cavuL346Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
caivuL0499Cicer arietinum ICC 4958 genome v2Cicer arietinum
caivuL0638Cicer arietinum ICC 4958 genome v2Cicer arietinum
cavuL444Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccvuL1306Cajanus cajan Asha genome v1.0Cajanus cajan
anvuL0321Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0372Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0486Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0762Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL1073Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL1143Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
asvuL203Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvuL728Vigna angularis Jingnong 6 genome v1.1Vigna angularis
vuzwsR641Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vuzwsR684Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vuzwsR698Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vfhvuL101Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvuL312Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL289Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvuL462Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL436Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vrvvuL397Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vrvvuL465Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vssvuL408Vicia sativa cv. Studenica genome v1.0Vicia sativa
vuvuaR449Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vuvuaR463Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvuL315Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvuL412Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjvuL478Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvuL567Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvuL609Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvuL331Cicer arietinum
carvuL410Cicer arietinum
ccavuL437Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavuL554Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vuvumR716Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvumR734Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvumR750Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvumR760Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvvaR747Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vuvvaR765Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vuvvaR772Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vuvvaR815Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vstvuL136Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvuL247Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvuL293Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vasvuL149Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvuL265Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvuL312Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvfvuL065Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvuL262Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvuL694Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
vuvunR520Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vuvunR527Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
rna-TanjilR_17666Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Psat6g001320.1Pisum sativum Cameor genome v1aPisum sativum
Ca_14959.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Cc_v2.0_15098.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Vigan.02G024800.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
rna-XM_014648495.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
rna-XM_004500862.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Cr_12703.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Phvul.009G019300.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-XM_004499249.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
rna-XM_014645032.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
XM_058869423.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
evm.model.Chr08.678Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
rna-KK1_019386Cajanus cajan Asha genome v1.0Cajanus cajan
Cr_10327.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Vigst.03G189900.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Vigan.03G294700.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Vigst.02G020600.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Vfaba.Tiffany.R1.3g194200.1Vicia faba cv. Tiffany genome v1.0Vicia faba
LR48_mrnaVigan09g034600Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Phvul.001G003400.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
PvulFLAVERTChr01.1000048Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Ca_04867Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Ca_08465.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Vum_03G02091.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Vum_02G00213.1Vigna umbellata FF25 genome v1.0Vigna umbellata
rna-TanjilR_20026Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Cc_v2.0_11026.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
rna-TanjilR_05431Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Ca_20763Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Vfaba.Hedin2.R1.3g239160.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
PvulFLAVERTChr09.235Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vigun09g256400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Vigun08g003300.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Vigun08g003300.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigun09g256400Vigun09g256400_Vu_IT97K-499-35_v1.1Vigna unguiculatagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vigun09g256400.1Vigun09g256400.1_Vu_IT97K-499-35_v1.1-proteinVigna unguiculatapolypeptide
Vigun09g256400.1_Vu_IT97K-499-35_v1.1Vigun09g256400.1_Vu_IT97K-499-35_v1.1Vigna unguiculatapolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun09g256400.1.v1.1.five_prime_UTR.1Vigun09g256400.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatafive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun09g256400.1.v1.1.CDS.1Vigun09g256400.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun09g256400.1.v1.1.three_prime_UTR.1Vigun09g256400.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatathree_prime_UTR


Homology
BLAST of Vigun09g256400.1 vs. DB:Swiss
Match: ATL23_ARATH (E3 ubiquitin-protein ligase ATL23 OS=Arabidopsis thaliana OX=3702 GN=ATL23 PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 4.045e-45
Identity = 77/136 (56.62%), Postives = 94/136 (69.12%), Query Frame = 1
Query:    1 MIDSVLLALFLPCLGMTAVFIVYMCLLWYATTRHHPSGN-GLPVKQVANKGLSPLELEKLPKITGKELVL---GTECAVCLDEIEGEQPARLVPGCNHGFHVQCADTWLSNHPLCPVCRTKLD---PQIFTSHNPC 387
            MI +V +AL LPC+GM  VF++Y+ LLW +T R         PVK V  KGLS LELEK+PK+TG+EL +    TECAVCL++IE  Q  RLVPGCNHGFH  CADTWLSNH +CPVCR +L    PQ   + +PC
Sbjct:   28 MIATVFMALLLPCVGMCIVFLIYLFLLWCSTRRRIERLRFAEPVKPVTGKGLSVLELEKIPKLTGRELAVIARSTECAVCLEDIESGQSTRLVPGCNHGFHQLCADTWLSNHTVCPVCRAELAPNLPQCNENQSPC 163          
BLAST of Vigun09g256400.1 vs. DB:Swiss
Match: ATL40_ARATH (RING-H2 finger protein ATL40 OS=Arabidopsis thaliana OX=3702 GN=ATL40 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.106e-17
Identity = 39/80 (48.75%), Postives = 49/80 (61.25%), Query Frame = 1
Query:  127 VKQVANKGLSPLELEKLPK-ITG-KELVLGTECAVCLDEIEGEQPARLVPGCNHGFHVQCADTWLSNHPLCPVCRTKLDP 360
            V Q   +GL  L +  LP  + G K  V GTECAVCL  +E +  AR++P C H FHV C DTWL+    CPVCRT+ +P
Sbjct:   68 VSQPPKRGLDSLVIASLPTFVVGIKNDVAGTECAVCLSLLEEKDNARMLPNCKHVFHVSCVDTWLTTQSTCPVCRTEAEP 147          
BLAST of Vigun09g256400.1 vs. DB:Swiss
Match: ATL43_ARATH (RING-H2 finger protein ATL43 OS=Arabidopsis thaliana OX=3702 GN=ATL43 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 3.597e-16
Identity = 34/79 (43.04%), Postives = 46/79 (58.23%), Query Frame = 1
Query:  142 NKGLSPLELEKLP-----KITGKELVLGTECAVCLDEIEGEQPARLVPGCNHGFHVQCADTWLSNHPLCPVCRTKLDPQ 363
            N G+    +E LP      ++G +   G ECAVCL   E  +  RL+P C H FHV+C DTWL  H  CP+CR ++DP+
Sbjct:  118 NSGIDRSVIESLPVFRFGALSGHKD--GLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPE 194          
BLAST of Vigun09g256400.1 vs. DB:Swiss
Match: ATL41_ARATH (E3 ubiquitin-protein ligase ATL41 OS=Arabidopsis thaliana OX=3702 GN=ATL41 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.316e-16
Identity = 42/119 (35.29%), Postives = 61/119 (51.26%), Query Frame = 1
Query:   43 GMTAVFIVYMCLLWYAT---TRHHPSGNGLPVK-----QVANKGLSPLELEKLPKIT----GKELVLGTECAVCLDEIEGEQPARLVPGCNHGFHVQCADTWLSNHPLCPVCRTKLDPQ 363
             ++ V ++   L  YA     R   +  GLPV      ++  +GL+P  +  LP  T           TECAVCL  ++ +  AR +P C H FHV C DTWL+    CPVCRT+++P+
Sbjct:   38 SLSGVILIVFALHLYARFVLRRRREAFRGLPVIFRHPFEMPKRGLNPTVIASLPTFTVGATDGVAASATECAVCLSVLKEQDKARELPNCKHIFHVDCVDTWLTTCSTCPVCRTEVEPR 156          
BLAST of Vigun09g256400.1 vs. DB:Swiss
Match: ATL54_ARATH (RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.203e-15
Identity = 28/52 (53.85%), Postives = 37/52 (71.15%), Query Frame = 1
Query:  190 GKELVLGTECAVCLDEIEGEQPARLVPGCNHGFHVQCADTWLSNHPLCPVCR 345
            G  L+  T+C VCL+E E ++  RL+P CNH FH+ C DTWLS+H  CP+CR
Sbjct:  168 GDGLIERTDCPVCLNEFEEDESLRLLPKCNHAFHISCIDTWLSSHTNCPLCR 219          
BLAST of Vigun09g256400.1 vs. DB:Swiss
Match: ATL78_ARATH (RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.378e-15
Identity = 44/119 (36.97%), Postives = 63/119 (52.94%), Query Frame = 1
Query:    1 MIDSVLLALFLPCLGMTAVFIVYMCLLWYATTRHHPSGNGLPVKQVANKGLSPLELEKLPKIT-GKELVL---GTECAVCLDEIEGEQPARLVPGCNHGFHVQCADTWLSNHPLCPVCR 345
            M+ SVLL   +  LG+ +  I+   L           G+  PV+ + N G+    L+    ++   EL L    TECA+CL E   E+  +L+P C+HGFHV+C D WLS+H  CP CR
Sbjct:   58 MVLSVLLCALVCSLGLNS--IIRCALRCSNLVPSEAGGDNYPVR-LTNTGVKRKALKSFQTVSYSTELNLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCIDKWLSSHSSCPTCR 173          
BLAST of Vigun09g256400.1 vs. DB:Swiss
Match: ATL32_ARATH (RING-H2 finger protein ATL32 OS=Arabidopsis thaliana OX=3702 GN=ATL32 PE=2 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 3.776e-15
Identity = 45/127 (35.43%), Postives = 66/127 (51.97%), Query Frame = 1
Query:   10 SVLLALFLPCLGMTAVFIVYMCLLWYATTRHHPSGNGLPVKQVANKG------LSPLELEKLPKI---TGKELVLGT---ECAVCLDEIEGEQPARLVPGCNHGFHVQCADTWLSNHPLCPVCRTKL 354
            +VL+ LF    G+ +V+I +         R +P  +    +  AN G      L    +E  P     + KE  +G+   ECA+CL+E+E  +  RL+P CNH FH+ C DTWL +H  CPVCR+ L
Sbjct:   51 AVLVTLFF-LTGLLSVYIRHCA-------RSNPDSSTRYFRNRANDGSSRRGGLDNAVVESFPVFAYSSVKESKIGSKDLECAICLNELEDHETVRLLPICNHLFHIDCIDTWLYSHATCPVCRSNL 169          
BLAST of Vigun09g256400.1 vs. DB:Swiss
Match: ATL3_ARATH (RING-H2 finger protein ATL3 OS=Arabidopsis thaliana OX=3702 GN=ATL3 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 5.519e-15
Identity = 35/83 (42.17%), Postives = 50/83 (60.24%), Query Frame = 1
Query:  136 VANKGLSPLELEKLPKITGKELV--LGTECAVCLDEIEGEQPARLVPGCNHGFHVQCADTWLSNHPLCPVCR-TKLDPQIFTS 375
            ++N GL+  EL  LP +  ++     G EC++CL E+     ARL+P CNH FHV+C D W  +H  CP+CR T L P+  +S
Sbjct:   98 LSNTGLTSFELSSLPIVFFRQDSCKDGLECSICLSELVKGDKARLLPKCNHSFHVECIDMWFQSHSTCPICRNTVLGPEQASS 180          
BLAST of Vigun09g256400.1 vs. DB:Swiss
Match: ATL8_ARATH (RING-H2 finger protein ATL8 OS=Arabidopsis thaliana OX=3702 GN=ATL8 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 7.784e-15
Identity = 47/125 (37.60%), Postives = 60/125 (48.00%), Query Frame = 1
Query:    1 MIDSVLLALFLPCLGMTAVFIVYMCLLWYATTRHHPSGNGLPVKQVANKGLSPLELEKLPKIT-------GKELVLGTECAVCLDEIEGEQPARLVPGCNHGFHVQCADTWLSNHPLCPVCRTKL 354
            +I +VLL      +G+ AV       L    +R+       P    ANKGL    L  LPK+T        ++LV   ECA+CL E       R++P C HGFHV C DTWL +H  CP CR  L
Sbjct:   30 LILAVLLCALTCIIGLIAV--SRCAWLRRIASRNRSDQTHPPPVAAANKGLKKKVLRSLPKLTYSPDSPPAEKLV---ECAICLTEFAAGDELRVLPQCGHGFHVSCIDTWLGSHSSCPSCRQIL 149          
BLAST of Vigun09g256400.1 vs. DB:Swiss
Match: ATL80_ARATH (RING-H2 finger protein ATL80 OS=Arabidopsis thaliana OX=3702 GN=ATL80 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.120e-14
Identity = 37/81 (45.68%), Postives = 43/81 (53.09%), Query Frame = 1
Query:  124 PVKQVANKGLSPLELEKLPKIT----GKELVLGTECAVCLDEIEGEQPARLVPGCNHGFHVQCADTWLSNHPLCPVCRTKL 354
            P    ANKGL    L+ LPK+T      E     ECA+CL E       R++P C HGFHV C DTWL +H  CP CR  L
Sbjct:   76 PPVAAANKGLKKKVLQSLPKLTFSPESPESEKFAECAICLAEFSAGDELRVLPQCGHGFHVACIDTWLGSHSSCPSCRQIL 156          
The following BLAST results are available for this feature:
BLAST of Vigun09g256400.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
ATL23_ARATH4.045e-4556.62E3 ubiquitin-protein ligase ATL23 OS=Arabidopsis t... [more]
ATL40_ARATH3.106e-1748.75RING-H2 finger protein ATL40 OS=Arabidopsis thalia... [more]
ATL43_ARATH3.597e-1643.04RING-H2 finger protein ATL43 OS=Arabidopsis thalia... [more]
ATL41_ARATH5.316e-1635.29E3 ubiquitin-protein ligase ATL41 OS=Arabidopsis t... [more]
ATL54_ARATH1.203e-1553.85RING-H2 finger protein ATL54 OS=Arabidopsis thalia... [more]
ATL78_ARATH2.378e-1536.97RING-H2 finger protein ATL78 OS=Arabidopsis thalia... [more]
ATL32_ARATH3.776e-1535.43RING-H2 finger protein ATL32 OS=Arabidopsis thalia... [more]
ATL3_ARATH5.519e-1542.17RING-H2 finger protein ATL3 OS=Arabidopsis thalian... [more]
ATL8_ARATH7.784e-1537.60RING-H2 finger protein ATL8 OS=Arabidopsis thalian... [more]
ATL80_ARATH1.120e-1445.68RING-H2 finger protein ATL80 OS=Arabidopsis thalia... [more]
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InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 73..114
e-value: 2.4E-6
score: 37.1
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 72..115
e-value: 5.5E-13
score: 49.0
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 73..115
score: 11.899
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 41..121
e-value: 2.9E-17
score: 64.1
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 60..121

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vigun09g256400.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g256400.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g256400.1; organism=Vigna unguiculata; type=mRNA; length=798bp
CGTTCACACACACACACAAAAGAAACCCACAAAAAGCATTCATAACTCCT
TCCTTTGTTTCTTCCGTCACCATTCGCGGTTTCATCACTTCGCCATACCT
CAACCTTCAACCTTTGATTGGATCTTTGTTTTCTTGTCTTCTTGTTTTTT
TCTTGTTTTCCAAACAGGGTATAAGCCTGTGTGAAGAGAGTGCGATATGC
ATGATAATTGGCGTGAACACCCGATCCCTTGGGTGCTTCTACCAACTCCA
CCACCGCATTAGTTAAATTCGGTGTTGGAATCGGACAAAGGTTCGAGTGA
GCGACTCAAAGGGCCAAAGCGCCAAAGCAAAGCCAGAGAAAGCAAAATGA
TTGATTCGGTTCTTCTCGCTCTTTTCTTGCCATGCCTCGGCATGACTGCG
GTTTTTATCGTCTACATGTGCCTTCTTTGGTACGCCACCACCCGCCACCA
TCCCTCCGGTAATGGGCTACCGGTGAAGCAGGTCGCTAACAAGGGTCTTT
CTCCTCTGGAGTTGGAGAAACTCCCCAAAATCACCGGCAAAGAACTAGTT
TTGGGTACCGAATGCGCCGTTTGCCTGGACGAGATCGAGGGCGAGCAACC
GGCTAGACTGGTCCCCGGTTGCAACCATGGCTTCCATGTCCAATGTGCTG
ATACTTGGCTCTCCAACCACCCTCTCTGTCCTGTTTGTAGGACTAAACTC
GATCCCCAGATTTTTACTTCCCATAATCCCTGTTGAACATTTCAATCCTC
TGTTATCTTTCAACCAAAATAAATAAGGGAattattattattattatt
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protein sequence of Vigun09g256400.1_Vu_IT97K-499-35_v1.1

>Vigun09g256400.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g256400.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g256400.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=130bp
MIDSVLLALFLPCLGMTAVFIVYMCLLWYATTRHHPSGNGLPVKQVANKG
LSPLELEKLPKITGKELVLGTECAVCLDEIEGEQPARLVPGCNHGFHVQC
ADTWLSNHPLCPVCRTKLDPQIFTSHNPC*
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mRNA from alignment at Vu09:42239819..42240616+

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun09g256400.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g256400.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g256400.1; organism=Vigna unguiculata; type=mRNA; length=798bp; location=Sequence derived from: Vu09:42239819..42240616+ (Vigna unguiculata
CGTTCACACACACACACAAAAGAAACCCACAAAAAGCATTCATAACTCCT TCCTTTGTTTCTTCCGTCACCATTCGCGGTTTCATCACTTCGCCATACCT CAACCTTCAACCTTTGATTGGATCTTTGTTTTCTTGTCTTCTTGTTTTTT TCTTGTTTTCCAAACAGGGTATAAGCCTGTGTGAAGAGAGTGCGATATGC ATGATAATTGGCGTGAACACCCGATCCCTTGGGTGCTTCTACCAACTCCA CCACCGCATTAGTTAAATTCGGTGTTGGAATCGGACAAAGGTTCGAGTGA GCGACTCAAAGGGCCAAAGCGCCAAAGCAAAGCCAGAGAAAGCAAAATGA TTGATTCGGTTCTTCTCGCTCTTTTCTTGCCATGCCTCGGCATGACTGCG GTTTTTATCGTCTACATGTGCCTTCTTTGGTACGCCACCACCCGCCACCA TCCCTCCGGTAATGGGCTACCGGTGAAGCAGGTCGCTAACAAGGGTCTTT CTCCTCTGGAGTTGGAGAAACTCCCCAAAATCACCGGCAAAGAACTAGTT TTGGGTACCGAATGCGCCGTTTGCCTGGACGAGATCGAGGGCGAGCAACC GGCTAGACTGGTCCCCGGTTGCAACCATGGCTTCCATGTCCAATGTGCTG ATACTTGGCTCTCCAACCACCCTCTCTGTCCTGTTTGTAGGACTAAACTC GATCCCCAGATTTTTACTTCCCATAATCCCTGTTGAACATTTCAATCCTC TGTTATCTTTCAACCAAAATAAATAAGGGAATTATTATTATTATTATT
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Coding sequence (CDS) from alignment at Vu09:42239819..42240616+

>Vigun09g256400.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g256400.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g256400.1; organism=Vigna unguiculata; type=CDS; length=390bp; location=Sequence derived from: Vu09:42239819..42240616+ (Vigna unguiculata
ATGATTGATTCGGTTCTTCTCGCTCTTTTCTTGCCATGCCTCGGCATGAC
TGCGGTTTTTATCGTCTACATGTGCCTTCTTTGGTACGCCACCACCCGCC
ACCATCCCTCCGGTAATGGGCTACCGGTGAAGCAGGTCGCTAACAAGGGT
CTTTCTCCTCTGGAGTTGGAGAAACTCCCCAAAATCACCGGCAAAGAACT
AGTTTTGGGTACCGAATGCGCCGTTTGCCTGGACGAGATCGAGGGCGAGC
AACCGGCTAGACTGGTCCCCGGTTGCAACCATGGCTTCCATGTCCAATGT
GCTGATACTTGGCTCTCCAACCACCCTCTCTGTCCTGTTTGTAGGACTAA
ACTCGATCCCCAGATTTTTACTTCCCATAATCCCTGTTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD