Vigun11g126500.1

Transcript Overview
NameVigun11g126500.1
Unique NameVigun11g126500.1_Vu_IT97K-499-35_v1.1
TypemRNA
OrganismVigna unguiculata (cowpea)
Sequence length914
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vu11supercontigVu11:33362538..33364723 -Vigna unguiculata L. Walp IT97K-499-35 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-15
InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-17
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vuvuL003Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vuvuR094Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
crvuL016Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
psvuL408Pisum sativum Cameor genome v1aPisum sativum
crvuL243Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvvuL016Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
psvuL679Pisum sativum Cameor genome v1aPisum sativum
psvuL686Pisum sativum Cameor genome v1aPisum sativum
pvvuL156Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
crvuL625Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvvuL481Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
cavuL012Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
caivuL0015Cicer arietinum ICC 4958 genome v2Cicer arietinum
cavuL177Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
caivuL0268Cicer arietinum ICC 4958 genome v2Cicer arietinum
caivuL0710Cicer arietinum ICC 4958 genome v2Cicer arietinum
cavuL485Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccvuL0993Cajanus cajan Asha genome v1.0Cajanus cajan
ccvuL1107Cajanus cajan Asha genome v1.0Cajanus cajan
anvuL0263Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0553Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0931Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL1041Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL1084Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
asvuL094Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvuL430Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvuL582Vigna angularis Jingnong 6 genome v1.1Vigna angularis
vuzwsR133Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vuzwsR144Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
tifvuL126Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL119Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvuL604Vicia faba cv. Tiffany genome v1.0Vicia faba
tifvuL685Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL562Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vfhvuL642Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vssvuL024Vicia sativa cv. Studenica genome v1.0Vicia sativa
vrvvuL201Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vrvvuL242Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vssvuL182Vicia sativa cv. Studenica genome v1.0Vicia sativa
vuvuaR075Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vuvuaR081Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvuL010Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvuL159Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvuL451Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjvuL046Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvuL359Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvuL505Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvuL016Cicer arietinum
carvuL178Cicer arietinum
carvuL448Cicer arietinum
ccavuL090Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavuL272Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavuL371Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vuvumR130Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvumR136Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvumR156Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvvaR134Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vuvvaR158Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vuvvaR170Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vstvuL325Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvuL454Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvuL502Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vasvuL344Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvuL473Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvuL518Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvfvuL011Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvuL141Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvuL412Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
vuvunR078Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vuvunR086Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
Vum_06G01081.1Vigna umbellata FF25 genome v1.0Vigna umbellata
rna-XM_014638052.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Psat07G0440800-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Vfaba.Hedin2.R1.6g019520.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Vigst.06G148300.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
PvulFLAVERTChr11.554Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Va08G058950.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
rna-XM_004506126.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
XM_058877393.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Ca_17918.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Phvul.011G094600.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Ca_16491Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
jg7742.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Cr_16682.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Vigan.06G165200.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
evm.model.Chr11.1217Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vfaba.Tiffany.R1.6g014520.1Vicia faba cv. Tiffany genome v1.0Vicia faba
rna-KK1_022367Cajanus cajan Asha genome v1.0Cajanus cajan
LR48_mrnaVigan08g137400Vigna angularis Jingnong 6 genome v1.1Vigna angularis
rna-TanjilR_23659Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Cc_v2.0_09560.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vigun11g126500.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigun11g126500Vigun11g126500_Vu_IT97K-499-35_v1.1Vigna unguiculatagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vigun11g126500.1_Vu_IT97K-499-35_v1.1Vigun11g126500.1_Vu_IT97K-499-35_v1.1Vigna unguiculatapolypeptide
Vigun11g126500.1Vigun11g126500.1_Vu_IT97K-499-35_v1.1-proteinVigna unguiculatapolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun11g126500.1.v1.1.CDS.3Vigun11g126500.1.v1.1.CDS.3_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun11g126500.1.v1.1.CDS.2Vigun11g126500.1.v1.1.CDS.2_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun11g126500.1.v1.1.CDS.1Vigun11g126500.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun11g126500.1.v1.1.three_prime_UTR.1Vigun11g126500.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatathree_prime_UTR


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun11g126500.1.v1.1.five_prime_UTR.1Vigun11g126500.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatafive_prime_UTR


Homology
[Close]
BLAST of Vigun11g126500.1 vs. DB:Swiss
Match: DPOE3_MOUSE (DNA polymerase epsilon subunit 3 OS=Mus musculus OX=10090 GN=Pole3 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.190e-15
Identity = 37/98 (37.76%), Postives = 60/98 (61.22%), Query Frame = 1 
Query:    1 MAEADE---LPRSIVRRVVKDKLSRCSEEGEISVSKDGLLAFSESGRIFIHYLSATANDICKESKRQIVNAEDVFKALEETEFSEFIRPLKASLEEFR 285
            MAE  E   LP +++ R++K+ L     +G +++SK+   A S +  +F+ Y ++ AN+   + KR+ +NA DV  A+EE EF  FI PLK +LE +R
Sbjct:    1 MAERPEDLNLPNAVITRIIKEALP----DG-VNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNASDVLSAMEEMEFQRFITPLKEALEAYR 93
[Close]
BLAST of Vigun11g126500.1 vs. DB:Swiss
Match: DPOE3_RAT (DNA polymerase epsilon subunit 3 OS=Rattus norvegicus OX=10116 GN=Pole3 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.363e-14
Identity = 36/98 (36.73%), Postives = 60/98 (61.22%), Query Frame = 1 
Query:    1 MAEADE---LPRSIVRRVVKDKLSRCSEEGEISVSKDGLLAFSESGRIFIHYLSATANDICKESKRQIVNAEDVFKALEETEFSEFIRPLKASLEEFR 285
            MAE  E   LP +++ R++K+ L     +G +++SK+   A S +  +F+ Y ++ AN+   + KR+ +NA DV  A+EE EF  F+ PLK +LE +R
Sbjct:    1 MAERPEDLNLPNAVITRIIKEALP----DG-VNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNASDVLSAMEEMEFQRFVTPLKEALEAYR 93
[Close]
BLAST of Vigun11g126500.1 vs. DB:Swiss
Match: DPOE3_PONAB (DNA polymerase epsilon subunit 3 OS=Pongo abelii OX=9601 GN=POLE3 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.410e-14
Identity = 36/98 (36.73%), Postives = 60/98 (61.22%), Query Frame = 1 
Query:    1 MAEADE---LPRSIVRRVVKDKLSRCSEEGEISVSKDGLLAFSESGRIFIHYLSATANDICKESKRQIVNAEDVFKALEETEFSEFIRPLKASLEEFR 285
            MAE  E   LP +++ R++K+ L     +G +++SK+   A S +  +F+ Y ++ AN+   + KR+ +NA DV  A+EE EF  F+ PLK +LE +R
Sbjct:    1 MAERPEDLNLPNAVITRIIKEALP----DG-VNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNASDVLSAMEEMEFQRFVTPLKEALEAYR 93
[Close]
BLAST of Vigun11g126500.1 vs. DB:Swiss
Match: DPOE3_HUMAN (DNA polymerase epsilon subunit 3 OS=Homo sapiens OX=9606 GN=POLE3 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.410e-14
Identity = 36/98 (36.73%), Postives = 60/98 (61.22%), Query Frame = 1 
Query:    1 MAEADE---LPRSIVRRVVKDKLSRCSEEGEISVSKDGLLAFSESGRIFIHYLSATANDICKESKRQIVNAEDVFKALEETEFSEFIRPLKASLEEFR 285
            MAE  E   LP +++ R++K+ L     +G +++SK+   A S +  +F+ Y ++ AN+   + KR+ +NA DV  A+EE EF  F+ PLK +LE +R
Sbjct:    1 MAERPEDLNLPNAVITRIIKEALP----DG-VNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNASDVLSAMEEMEFQRFVTPLKEALEAYR 93
[Close]
BLAST of Vigun11g126500.1 vs. DB:Swiss
Match: DPOE3_BOVIN (DNA polymerase epsilon subunit 3 OS=Bos taurus OX=9913 GN=POLE3 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.410e-14
Identity = 36/98 (36.73%), Postives = 60/98 (61.22%), Query Frame = 1 
Query:    1 MAEADE---LPRSIVRRVVKDKLSRCSEEGEISVSKDGLLAFSESGRIFIHYLSATANDICKESKRQIVNAEDVFKALEETEFSEFIRPLKASLEEFR 285
            MAE  E   LP +++ R++K+ L     +G +++SK+   A S +  +F+ Y ++ AN+   + KR+ +NA DV  A+EE EF  F+ PLK +LE +R
Sbjct:    1 MAERPEDLNLPNAVITRIIKEALP----DG-VNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNASDVLSAMEEMEFQRFVTPLKEALEAYR 93
[Close]
BLAST of Vigun11g126500.1 vs. DB:Swiss
Match: DPOE3_DICDI (DNA polymerase epsilon subunit 3 OS=Dictyostelium discoideum OX=44689 GN=pole3 PE=3 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 3.062e-12
Identity = 34/94 (36.17%), Postives = 58/94 (61.70%), Query Frame = 1 
Query:    1 MAEADELPRSIVRRVVKDKLSRCSEEGEISVSKDGLLAFSESGRIFIHYLSATANDICKESKRQIVNAEDVFKALEETEFSEFIRPLKASLEEF 282
            M+E+ +LP +IV R++K  L     EG +  +K+  LA +++ +++IHYL+A + D    S R  ++ +DVF+A+EE +F  F    K  LEE+
Sbjct:    1 MSESQDLPGAIVNRIIKASLP----EG-VLCAKESRLAIAKAAKVWIHYLTAASIDFSSHSGRSTISPKDVFQAIEEIDFENF----KPQLEEY 85
[Close]
BLAST of Vigun11g126500.1 vs. DB:Swiss
Match: DPB4_DEBHA (DNA polymerase epsilon subunit D OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DPB4 PE=3 SV=2)

HSP 1 Score: 62.7734 bits (151), Expect = 2.751e-11
Identity = 31/90 (34.44%), Postives = 54/90 (60.00%), Query Frame = 1 
Query:   19 LPRSIVRRVVKDKLSRCSEEG--EISVSKDGLLAFSESGRIFIHYLSATANDICKESKRQIVNAEDVFKALEETEFSEFIRPLKASLEEF 282
             PR+ V+++ K+ ++  S+EG   + ++KD ++A   S  +F+ +L   A  I K+  R+ +NA+D+  ALE+ EFS FI  +K  L  F
Sbjct:   31 FPRATVQKLAKNIMNASSDEGASNMILAKDSMIALQRSSTVFVSHLMFQARQISKDEGRKTINAQDILSALEKAEFSGFIPEVKQKLSVF 120
[Close]
BLAST of Vigun11g126500.1 vs. DB:Swiss
Match: NFYB2_ARATH (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NFYB2 PE=1 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 1.421e-7
Identity = 27/89 (30.34%), Postives = 46/89 (51.69%), Query Frame = 1 
Query:   19 LPRSIVRRVVKDKLSRCSEEGEISVSKDGLLAFSESGRIFIHYLSATANDICKESKRQIVNAEDVFKALEETEFSEFIRPLKASLEEFR 285
            LP + V R++K  L          +SKD      E    FI +++  A+D C++ KR+ +N +D+  A+    F +++ PLK  L+ FR
Sbjct:   32 LPIANVSRIMKKALP-----ANAKISKDAKETMQECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFR 115
[Close]
BLAST of Vigun11g126500.1 vs. DB:Swiss
Match: NFYB3_ARATH (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NFYB3 PE=1 SV=1)

HSP 1 Score: 51.2174 bits (121), Expect = 1.804e-7
Identity = 26/89 (29.21%), Postives = 48/89 (53.93%), Query Frame = 1 
Query:   19 LPRSIVRRVVKDKLSRCSEEGEISVSKDGLLAFSESGRIFIHYLSATANDICKESKRQIVNAEDVFKALEETEFSEFIRPLKASLEEFR 285
            LP + V R++K  L   ++     +SKD      E    FI +++  A+D C+  KR+ +N +D+  A+    F +++ PLK  L+++R
Sbjct:   26 LPIANVSRIMKKALPANAK-----ISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYR 109
[Close]
BLAST of Vigun11g126500.1 vs. DB:Swiss
Match: NFYB_CHICK (Nuclear transcription factor Y subunit beta OS=Gallus gallus OX=9031 GN=NFYB PE=2 SV=2)

HSP 1 Score: 50.8322 bits (120), Expect = 3.711e-7
Identity = 25/89 (28.09%), Postives = 49/89 (55.06%), Query Frame = 1 
Query:   19 LPRSIVRRVVKDKLSRCSEEGEISVSKDGLLAFSESGRIFIHYLSATANDICKESKRQIVNAEDVFKALEETEFSEFIRPLKASLEEFR 285
            LP + V R++K+ + +  +     ++KD      E    FI ++++ A++ C + KR+ +N ED+  A+    F  ++ PLK  L++FR
Sbjct:   57 LPIANVARIMKNAIPQTGK-----IAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFR 140
The following BLAST results are available for this feature:
BLAST of Vigun11g126500.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
DPOE3_MOUSE9.190e-1537.76DNA polymerase epsilon subunit 3 OS=Mus musculus O... [more]
DPOE3_RAT1.363e-1436.73DNA polymerase epsilon subunit 3 OS=Rattus norvegi... [more]
DPOE3_PONAB1.410e-1436.73DNA polymerase epsilon subunit 3 OS=Pongo abelii O... [more]
DPOE3_HUMAN1.410e-1436.73DNA polymerase epsilon subunit 3 OS=Homo sapiens O... [more]
DPOE3_BOVIN1.410e-1436.73DNA polymerase epsilon subunit 3 OS=Bos taurus OX=... [more]
DPOE3_DICDI3.062e-1236.17DNA polymerase epsilon subunit 3 OS=Dictyostelium ... [more]
DPB4_DEBHA2.751e-1134.44DNA polymerase epsilon subunit D OS=Debaryomyces h... [more]
NFYB2_ARATH1.421e-730.34Nuclear transcription factor Y subunit B-2 OS=Arab... [more]
NFYB3_ARATH1.804e-729.21Nuclear transcription factor Y subunit B-3 OS=Arab... [more]
NFYB_CHICK3.711e-728.09Nuclear transcription factor Y subunit beta OS=Gal... [more]
back to top
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 58..78
NoneNo IPR availableCOILSCoilCoilcoord: 109..129
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 100..143
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 100..151
IPR003958Transcription factor CBF/NF-Y/archaeal histone domainPFAMPF00808CBFD_NFYB_HMFcoord: 6..75
e-value: 1.7E-7
score: 31.4
IPR009072Histone-foldGENE3D1.10.20.10coord: 2..149
e-value: 7.8E-33
score: 115.2
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 7..123

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vigun11g126500.1_Vu_IT97K-499-35_v1.1 ID=Vigun11g126500.1_Vu_IT97K-499-35_v1.1; Name=Vigun11g126500.1; organism=Vigna unguiculata; type=mRNA; length=914bp
AAAAAAGAAATTGAAAATGGCGGGAAAAGATGTGTAAGTAGAAAACCCTA
ACCCTAAATTCATTCCAATTCCCAATTCCGATTCGAAGAACAGAATGGCT
GAGGCGGATGAGCTGCCCCGGTCTATCGTGCGCCGTGTTGTGAAGGATAA
ACTGTCCCGATGCTCTGAAGAAGGAGAAATTTCCGTCAGCAAAGATGGTC
TTCTCGCATTCTCAGAAAGCGGTAGGATCTTCATCCACTACCTTTCCGCC
ACGGCTAATGACATATGTAAGGAGTCAAAGAGACAAATTGTCAATGCTGA
AGATGTTTTCAAAGCTCTTGAAGAAACCGAGTTCTCTGAGTTTATTCGTC
CTCTAAAAGCTTCCCTTGAAGAGTTTAGGAAGAAGAATGTTGGAAAGAAA
GCGGCTGTGGgaaagggaaaagaagaagagcagagaaagaaaaggaaaTT
GGAAGCTGAGTCATCTGACAAAGGTGAGGCTTCCATTAACGACGAGTCAT
CTGATAAAGCGGAGGGTTCTGATAAAGGTGAGGGCGAAGACGATGAATAA
GACCAATTATTTACTGCGATGAAGGCAACTGCATTATGTTGTGACTGAAC
AAGGTCTTTAATTTTGTATGTTGATAATTAATGTGCGTGACCCCTTATCA
ATTGGATGCTACTTAGTATTATTAATATAGCTTTTTGATTTTTCTCGGTA
AAACACCCCCCCTACATCCTTGATGACAGAAACATTTTAGGTAAGAAAGG
ATACTAAATATTTATATTTATGAGTTACATTCTTTCACAATGGGTGTAAC
AAAGAAGTTGCAGAGGAACGGTGAACAAAATTGCAGGATGATCTCAGAAA
AGCTTACCTTTTAAGTCTTTAGCGCGTGCATTTTATCATTATTTACAATG
TTTTGAAAACCTAA
back to top

protein sequence of Vigun11g126500.1_Vu_IT97K-499-35_v1.1

>Vigun11g126500.1_Vu_IT97K-499-35_v1.1 ID=Vigun11g126500.1_Vu_IT97K-499-35_v1.1; Name=Vigun11g126500.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=152bp
MAEADELPRSIVRRVVKDKLSRCSEEGEISVSKDGLLAFSESGRIFIHYL
SATANDICKESKRQIVNAEDVFKALEETEFSEFIRPLKASLEEFRKKNVG
KKAAVGKGKEEEQRKKRKLEAESSDKGEASINDESSDKAEGSDKGEGEDD
E*
back to top

mRNA from alignment at Vu11:33362538..33364723-

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun11g126500.1_Vu_IT97K-499-35_v1.1 ID=Vigun11g126500.1_Vu_IT97K-499-35_v1.1; Name=Vigun11g126500.1; organism=Vigna unguiculata; type=mRNA; length=2186bp; location=Sequence derived from: Vu11:33362538..33364723- (Vigna unguiculata
AAAAAAGAAATTGAAAATGGCGGGAAAAGATGTGTAAGTAGAAAACCCTA
ACCCTAAATTCATTCCAATTCCCAATTCCGATTCGAAGAACAGAATGGCT
GAGGCGGATGAGCTGCCCCGGTCTATCGTGCGCCGTGTTGTGAAGGATAA
ACTGTCCCGATGCTCTGAAGAAGGAGAAATTTCCGTCAGCAAAGATGGTC
TTCTCGCATTCTCAGAAAGCGGTAGGATCTTCATCCACTACCTTTCCGCC
ACGTAAGCCCTCGAACCCCTTCCCCCTAATTAATTTCACTGAAAATTGTC
AATTTTGATGATCGAATCCCTTTTCCCCTACTTAGAAAACTTAGGATTCG
AATTGGGTGATTGATAAATAGATGGTTTGAACAGTGGAAGAAAGTAAGAA
TGGAAGAAAAAAAATAGATAGAAAAAACAGAACAGTGATGGGTATTTTTA
TGGAATGATATGGTATGAATGTGTGTGACCTTAGCTGATGTGATGGGTGT
GATGTAGGGCTAATGACATATGTAAGGAGTCAAAGAGACAAATTGTCAAT
GCTGAAGATGTTTTCAAAGCTCTTGAAGAAACCGAGTTCTCTGAGTTTAT
TCGTCCTCTAAAAGCTTCCCTTGAAGGTAGATTACTTTTAATCACTTAAA
ATGTTTTGGTTGGTTAGCACCACAGATCAGGGTCTACTAGCTCTGATTCA
TTTTTTTTGGAACTTGTCAAGTTCTTGTGAAATTACCTTGTTCTGAAAGT
CAGAACATTGTGACATATCGAGATACTGAGAGGACTAGAAGTTGTATGAA
GATCATATAATCTTAAGTTTTTGTGATCTGATTCAATGGCCAATATTCAC
TTCTTTCAGTCACTCATAATGAAAATCCTCTCACTTGATATGTTCTCTCT
CTCTCTCTCTCTCTCTCTCTATGGGGAGAGAGGAGCCACATGAGAGATAT
ATAAGTTAATCTCAATTATATGTCCATCTTGGACATTCTTCTTATTCTAA
TTTGTTTGACTCTTTTATTGAGATTAAGTTTGTTTTATTTTATCAGCTTT
AACATATGATCCTGGCTTGTTAATAAGTTTGTTCTCTGTAGTTCTGCTAA
AAGCATGATTAGTTAGTCTAGTGGAAAGTAATAGGTTCGAAGATATGAAG
TGGAACCTGAGGATTAGTTAGTGCATGGTTGGTCGTGTATTGCCTAGTTA
ACTGCGGATACATGATTCACTGTCAAGTTGAAGCTCCTCTAAATAGTTTT
AGTTTTTTTCGCATTTGAAACGTGGGTCCAGGACTCCTAATGCCAAACCA
AACGCCATTATTGATATGAAGTGTAGAGGAAAATCTTTGGTTCAAAGATA
TTAGGAGGATCTGTTATTTTATTCATAAATAAGTACATATATACAGTAGT
GGGAGACTAGAAGAAGGATTGTACATTTGAAGCATACAAGACAATACTTT
GTAATGTTTTGCATTAGTAATGTCCAAAGATTTTATGCCATTTATTTTTC
ATATTGGAAATGCCTGATATATGTAGTTGTATGTTTGTATTGATTTTACT
AGCGAATGCACTTCACAGACAGTTAGTTTTGGAAGAGGTAATTTTCTGTG
CTTATGTATTGTAGCCTAATGCTTTATCTTCGTTGCTTAGCAGAGTTTAG
GAAGAAGAATGTTGGAAAGAAAGCGGCTGTGGGAAAGGGAAAAGAAGAAG
AGCAGAGAAAGAAAAGGAAATTGGAAGCTGAGTCATCTGACAAAGGTGAG
GCTTCCATTAACGACGAGTCATCTGATAAAGCGGAGGGTTCTGATAAAGG
TGAGGGCGAAGACGATGAATAAGACCAATTATTTACTGCGATGAAGGCAA
CTGCATTATGTTGTGACTGAACAAGGTCTTTAATTTTGTATGTTGATAAT
TAATGTGCGTGACCCCTTATCAATTGGATGCTACTTAGTATTATTAATAT
AGCTTTTTGATTTTTCTCGGTAAAACACCCCCCCTACATCCTTGATGACA
GAAACATTTTAGGTAAGAAAGGATACTAAATATTTATATTTATGAGTTAC
ATTCTTTCACAATGGGTGTAACAAAGAAGTTGCAGAGGAACGGTGAACAA
AATTGCAGGATGATCTCAGAAAAGCTTACCTTTTAAGTCTTTAGCGCGTG
CATTTTATCATTATTTACAATGTTTTGAAAACCTAA
back to top

Coding sequence (CDS) from alignment at Vu11:33362538..33364723-

>Vigun11g126500.1_Vu_IT97K-499-35_v1.1 ID=Vigun11g126500.1_Vu_IT97K-499-35_v1.1; Name=Vigun11g126500.1; organism=Vigna unguiculata; type=CDS; length=456bp; location=Sequence derived from: Vu11:33362538..33364723- (Vigna unguiculata
ATGGCTGAGGCGGATGAGCTGCCCCGGTCTATCGTGCGCCGTGTTGTGAA
GGATAAACTGTCCCGATGCTCTGAAGAAGGAGAAATTTCCGTCAGCAAAG
ATGGTCTTCTCGCATTCTCAGAAAGCGGTAGGATCTTCATCCACTACCTT
TCCGCCACGGCTAATGACATATGTAAGGAGTCAAAGAGACAAATTGTCAA
TGCTGAAGATGTTTTCAAAGCTCTTGAAGAAACCGAGTTCTCTGAGTTTA
TTCGTCCTCTAAAAGCTTCCCTTGAAGAGTTTAGGAAGAAGAATGTTGGA
AAGAAAGCGGCTGTGGGAAAGGGAAAAGAAGAAGAGCAGAGAAAGAAAAG
GAAATTGGAAGCTGAGTCATCTGACAAAGGTGAGGCTTCCATTAACGACG
AGTCATCTGATAAAGCGGAGGGTTCTGATAAAGGTGAGGGCGAAGACGAT
GAATAA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR003958CBFA_NFYB_domain
IPR009072Histone-fold
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity