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Transcript Overview
Name | Phvul.001G174800.1 |
Unique Name | Phvul.001G174800.1_Pv_G19833_v2.1 |
Type | mRNA |
Organism | Phaseolus vulgaris (Common bean) |
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Phvul.001G174800.1.v2.1.five_prime_UTR.1 | Phvul.001G174800.1.v2.1.five_prime_UTR.1_Pv_G19833_v2.1 | Phaseolus vulgaris | five_prime_UTR |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Phvul.001G174800.1.v2.1.CDS.1 | Phvul.001G174800.1.v2.1.CDS.1_Pv_G19833_v2.1 | Phaseolus vulgaris | CDS |
Phvul.001G174800.1.v2.1.CDS.2 | Phvul.001G174800.1.v2.1.CDS.2_Pv_G19833_v2.1 | Phaseolus vulgaris | CDS |
Phvul.001G174800.1.v2.1.CDS.3 | Phvul.001G174800.1.v2.1.CDS.3_Pv_G19833_v2.1 | Phaseolus vulgaris | CDS |
Phvul.001G174800.1.v2.1.CDS.4 | Phvul.001G174800.1.v2.1.CDS.4_Pv_G19833_v2.1 | Phaseolus vulgaris | CDS |
Phvul.001G174800.1.v2.1.CDS.5 | Phvul.001G174800.1.v2.1.CDS.5_Pv_G19833_v2.1 | Phaseolus vulgaris | CDS |
Phvul.001G174800.1.v2.1.CDS.6 | Phvul.001G174800.1.v2.1.CDS.6_Pv_G19833_v2.1 | Phaseolus vulgaris | CDS |
Phvul.001G174800.1.v2.1.CDS.7 | Phvul.001G174800.1.v2.1.CDS.7_Pv_G19833_v2.1 | Phaseolus vulgaris | CDS |
Phvul.001G174800.1.v2.1.CDS.8 | Phvul.001G174800.1.v2.1.CDS.8_Pv_G19833_v2.1 | Phaseolus vulgaris | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Phvul.001G174800.1.v2.1.three_prime_UTR.1 | Phvul.001G174800.1.v2.1.three_prime_UTR.1_Pv_G19833_v2.1 | Phaseolus vulgaris | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
Phvul.001G174800.1 | Phvul.001G174800.1_Pv_G19833_v2.1-protein | Phaseolus vulgaris | polypeptide |
Phvul.001G174800.1_Pv_G19833_v2.1 | Phvul.001G174800.1_Pv_G19833_v2.1 | Phaseolus vulgaris | polypeptide |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 35..54 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 446..500 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 459..473 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 307..347 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 235..252 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 322..347 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 171..195 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 512..544 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 361..386 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 63..87 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 171..252 |
Sequences
The
following sequences are available for this feature:
protein sequence of Phvul.001G174800.1_Pv_G19833_v2.1 >Phvul.001G174800.1_Pv_G19833_v2.1 ID=Phvul.001G174800.1_Pv_G19833_v2.1; Name=Phvul.001G174800.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=758bp MISETASSLRKRDVQDRRLSIIDVSSADDSLLDGNTLHHHSENQSHADML CTPNSKNFEDAATKVQQWEHEPRSNGASGNGKPNKNSKCNLRKSLAWDSA FFTSAGVLDAEELSSIIEGVEKEEKHELPDIQEDVYKSCESISTLASDSL TFESAEVEGDLFEDVRASIQKSSRKSSPAGANTKVPSSPVVPGFQTHDSS KKIGMVSRNKMKAPPGSKISSGMQGLGKTMKKNNPIFPQLPQKPTATRRE SSILRQSKVLAKPSLNSTISSKRESLGNLHVKGERDKAKRIIGDRVSSVT KTSVIGGSRGIVPKPTLPSKSAPGLTVPNRTKSVTSTSSGNNLSDNIGKS SFNYLKGGYKPTSSCPAVRTPSRIAPRNKTEPEISSLSSLMSATKLSSSI SPASSISDWSSSESSSTISMAKRVCNSSRSSIDSGSSRKVLLDAEADQGT HSHIPHDSSLESQENQLHGLISQKERTTPGVAVLPPAPKKPSGLRLPSPK IGFFDGVKPLVRTPRGGMQPRSVVPGSLPKHVALSPNEGQNKTEIGKLHD SKSIASIENTKPNNQQAPIPNPFHESSDVAIKTSNGAQNKSSSDMPLGAD ENTSLIHVVEKTHHDLLPLKGVNNQANYHHDDQIDSLSKQVGHMDINFET REKFNCDTLSLLQTDISSQDNSNGLELSNHEEIDCPKKEELLKSSSTKCL SASPTNFDVAASARSPFAVKDSFCNMDGVVFTESTVSEPKSKTDLPVTDS IILKENN* back to topmRNA from alignment at Chr01:43166407..43170329+ Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Phvul.001G174800.1_Pv_G19833_v2.1 ID=Phvul.001G174800.1_Pv_G19833_v2.1; Name=Phvul.001G174800.1; organism=Phaseolus vulgaris; type=mRNA; length=3923bp; location=Sequence derived from: Chr01:43166407..43170329+ (Phaseolus vulgaris CACTTTAGCCGCTTCTCCAAAGTTCAAATTTTCTAAAATAAAAAACTCTC
TCTCACTCTTCTTTTCTCTGCGCCATTTCAATTCCTTCAATTAGGGATCC
ATGATTTCCGAAACGGCGAGTTCCCTGAGAAAGAGGGATGTTCAAGACCG
ACGCCTCAGCATCATCGACGTTTCTTCCGCCGACGACTCGCTTCTCGATG
GAAACACTCTTCACCACCATTCAGGTTATTTTTCTTTTTCTCATTCGACT
CTAAACAACACCGATTCTTCTGAATCATTTTGGCGTTTTATGCATCGAGA
TTCAAAGATCAAATGAAACGCGTTCAAATTTTCCCTTTCAGAAAACCAAT
CGCACGCGGATATGCTGTGCACTCCGAACTCGAAGAACTTCGAAGACGCC
GCCACCAAAGTCCAGCAGTGGGAGCACGAGCCTCGCTCCAATGGCGCATC
CGGAAACGGAAAACCTAATAAAAATAGCAAATGCAATTTGCGCAAGAGTT
TGGCCTGGGATAGTGCCTTTTTCACCAGCGCCGGTATTTTAGTTTTTACT
TTGGTTATTTTATTGGATGTTTAGTAGTTTTGTGTTTGATTGATGCGTGT
TTTTCAGGGGTTTTGGATGCTGAGGAATTGTCTAGTATAATTGAAGGCGT
TGAGAAGGAAGAGAAACACGAATTACCGGATATTCAAGAGGATGTGTACA
AGTCGTGTGAGTCCATATCTACGTTAGCGAGTGATAGTTTGACTTTTGAG
AGTGCGGAGGTGGAGGGTGATTTGTTTGAGGATGTAAGAGCTTCAATTCA
GAAATCTAGCCGAAAGTCCAGCCCTGCAGGTGCAAACACCAAAGTCCCAT
CTTCCCCTGTGGTTCCAGGATTCCAAACTCATGACTGTATGTCTCGGTCT
GCACTCTCTGTATTCACTATTCTGCATAGATCCTTGCAATCTGTTTCCGA
AGTGCATCCATAAAGTGTGTATTTTATTAACCAGTTTTCACAATTAAGAG
TTTGTTATTCCTAAACATTACTTGAAAGGGATTTTAGTTATAGTTGTAAC
TAAAATTGGTTAGAGGGGCATCAAATGAGTGGATGAACATTTCAAATGTT
TGTTTATCTTGCATATGTGCATTCTGAACTTCGACGAGTTCTAGAACTTA
TTTCTTCTGCTCATCTTATATTTTGTGCACTGTTGATTTATACTCAATTG
GTCAAATTATTAACTTCTGGCTTTTATTTTCAGCTTCGAAAAAAATCGGC
ATGGTTTCTCGCAACAAGGTAAATCGCATTTATGATAGAGACTCGTAAGT
TTTTATAATGTTAATGTCTGTGTTTGAATGACTCTCAATAATACTTGAAG
AGAAATGTTTTTAATGCCAGAAAGGTGGCTTGGTTAAGCTGTAAGTTGTT
TGTTTATCTCAACTAAAAAATTGAGTGTAATGTGTCCCTAATTCCTTCAC
TCACAGAGGTGCCTATTACCAATGGTGGACATAGGAGCTGTAGATACATG
TTCATGGTTTTACACACAAAACCATAGAAATTAAGATGTCCATTTCCCAC
CATTTCCCATTAGGGGATCTCTACTCGTGCATGGTGGTGAATAGGGAACA
AATTTTCCTGTGTCTTAAATAGTTTACTCTGATTGCGTCCCATAGCCCCA
TTTGGTGAAATAAAAAATCTGTAGTATAGTAACTTTTGTATTGATATTTT
AGATGAAGGCCCCACCTGGTTCTAAGATAAGTTCTGGCATGCAAGGACTT
GGAAAGACAATGAAAAAGAATAATCCTATTTTTCCACAACTTCCACAGGT
ATGCAACTAAATAAAACCACTTAAGAGAACTAGTGGCTTTTCTAATTTTG
CTTGCTAATTGTCACGCAGGCTTGTCCAATAAAATATTGAGTGGCTATAT
ACCTGACTATTTTTCTTATTTTGAAGAAGCCTACTGCTACAAGGAGAGAG
TCGTCTATCTTAAGGCAATCAAAGGTACTAGCAAAGCCTAGTTTAAATTC
CACAATTTCCTCCAAGAGAGAATCCCTTGGCAATCTACATGTTAAAGGTG
AAAGGGACAAGGCAAAACGAATAATTGGTGGTTAGAACTTGCTTTAGCAT
TTTTTTCCATTTCTCATTTTGGCAAAATGGTTGCATTTTCTGAATTGTAG
TTAACTTCTATTCTCGTTTGGCCTCTTCAGATAGAGTAAGTTCGGTGACA
AAAACATCTGTTATTGGAGGTTCTCGAGGTATTGTGCCTAAGCCCACACT
ACCATCCAAATCAGCACCTGGACTGACAGTACCAAACAGGACTAAATCAG
TGACTTCCACATCTTCCGGTAACAATTTATCTGACAATATTGGTAAATCT
TCTTTTAATTACTTAAAAGGAGGTTATAAACCAACCTCATCTTGCCCCGC
TGTTAGAACGCCTTCAAGAATAGCTCCAAGAAATAAAACTGAACCTGAGA
TTTCTAGTCTTTCAAGCTTGATGTCTGCCACAAAGCTTTCTTCTAGTATT
TCACCGGCTAGTTCTATCAGTGACTGGTCTTCGTCAGAGTCATCTTCAAC
AATTTCTATGGCTAAACGTGTATGTAATAGTTCAAGGTCCAGCATTGATA
GTGGCTCAAGCAGAAAGGTTTTATTGGATGCTGAAGCAGATCAAGGTACA
CATTCTCACATTCCACATGATTCAAGCTTAGAAAGTCAAGAGAACCAGCT
TCATGGGTTAATTAGTCAAAAGGAAAGGACAACTCCTGGAGTGGCGGTTC
TTCCTCCAGCTCCCAAGAAACCTTCAGGCCTTCGTCTTCCTTCACCGAAG
ATTGGTTTCTTTGATGGGGTGAGTTTTGCTTTTTCTATATTTTTAAAGTA
GTTAGAATCCGTGTTGGTTACTGATCAGTACCATTTTCTTGGAGAAGTTT
ATAGACTATCATTATGACTTTGGTCCCACACTATTTTGTTGTTCTTCCAG
GTGCAATATGTGTTTCTGCAAATTATGATAATTTACTTATCGCATTTCTT
TTGCCATCTCTCTATTACTCTGCATTTATTAAGTTGGTGTCATAATGTTG
TGCAGGTGAAGCCCTTAGTGCGCACTCCACGGGGGGGAATGCAACCACGC
TCTGTTGTACCTGGTAGCTTGCCAAAACATGTAGCTCTAAGTCCAAATGA
AGGCCAAAACAAAACGGAAATTGGAAAGCTTCATGATTCTAAATCTATCG
CATCAATTGAAAATACAAAACCCAATAACCAGCAAGCTCCCATTCCAAAT
CCTTTTCATGAATCATCAGATGTTGCAATTAAGACATCTAACGGTGCGCA
GAATAAAAGCTCTTCCGACATGCCCTTGGGTGCTGATGAAAATACATCAC
TCATCCATGTAGTAGAGAAAACCCATCATGATTTGCTACCACTTAAAGGT
GTCAATAACCAGGCAAATTATCATCATGATGATCAAATTGATAGTTTGAG
CAAACAAGTTGGACATATGGACATAAATTTTGAGACACGGGAAAAGTTTA
ACTGTGATACCCTTTCTTTATTGCAGACTGATATCAGCTCCCAAGATAAC
TCTAATGGTCTGGAGTTATCTAATCACGAAGAGATTGATTGTCCTAAGAA
AGAAGAATTATTAAAGAGTTCATCTACTAAATGTCTCTCTGCCTCCCCAA
CTAACTTTGATGTGGCAGCTTCAGCGAGGAGTCCCTTTGCAGTCAAGGAT
TCCTTTTGCAACATGGATGGCGTTGTCTTTACAGAATCAACAGTTTCAGA
ACCAAAATCGAAGACCGACTTGCCTGTTACCGATAGCATTATTTTGAAGG
AAAACAACTAAACCAGTGACATTGTGTAAGTTGGACCATATATTTGCTAA
ATTTACTTTTGTGCTAAAAGTGCGACTATAGAAGAAGTCTTGATCTTTGT
CCAAATCATGAATGGAAAGTCTT back to topCoding sequence (CDS) from alignment at Chr01:43166407..43170329+ >Phvul.001G174800.1_Pv_G19833_v2.1 ID=Phvul.001G174800.1_Pv_G19833_v2.1; Name=Phvul.001G174800.1; organism=Phaseolus vulgaris; type=CDS; length=2274bp; location=Sequence derived from: Chr01:43166407..43170329+ (Phaseolus vulgaris ATGATTTCCGAAACGGCGAGTTCCCTGAGAAAGAGGGATGTTCAAGACCG ACGCCTCAGCATCATCGACGTTTCTTCCGCCGACGACTCGCTTCTCGATG GAAACACTCTTCACCACCATTCAGAAAACCAATCGCACGCGGATATGCTG TGCACTCCGAACTCGAAGAACTTCGAAGACGCCGCCACCAAAGTCCAGCA GTGGGAGCACGAGCCTCGCTCCAATGGCGCATCCGGAAACGGAAAACCTA ATAAAAATAGCAAATGCAATTTGCGCAAGAGTTTGGCCTGGGATAGTGCC TTTTTCACCAGCGCCGGGGTTTTGGATGCTGAGGAATTGTCTAGTATAAT TGAAGGCGTTGAGAAGGAAGAGAAACACGAATTACCGGATATTCAAGAGG ATGTGTACAAGTCGTGTGAGTCCATATCTACGTTAGCGAGTGATAGTTTG ACTTTTGAGAGTGCGGAGGTGGAGGGTGATTTGTTTGAGGATGTAAGAGC TTCAATTCAGAAATCTAGCCGAAAGTCCAGCCCTGCAGGTGCAAACACCA AAGTCCCATCTTCCCCTGTGGTTCCAGGATTCCAAACTCATGACTCTTCG AAAAAAATCGGCATGGTTTCTCGCAACAAGATGAAGGCCCCACCTGGTTC TAAGATAAGTTCTGGCATGCAAGGACTTGGAAAGACAATGAAAAAGAATA ATCCTATTTTTCCACAACTTCCACAGAAGCCTACTGCTACAAGGAGAGAG TCGTCTATCTTAAGGCAATCAAAGGTACTAGCAAAGCCTAGTTTAAATTC CACAATTTCCTCCAAGAGAGAATCCCTTGGCAATCTACATGTTAAAGGTG AAAGGGACAAGGCAAAACGAATAATTGGTGATAGAGTAAGTTCGGTGACA AAAACATCTGTTATTGGAGGTTCTCGAGGTATTGTGCCTAAGCCCACACT ACCATCCAAATCAGCACCTGGACTGACAGTACCAAACAGGACTAAATCAG TGACTTCCACATCTTCCGGTAACAATTTATCTGACAATATTGGTAAATCT TCTTTTAATTACTTAAAAGGAGGTTATAAACCAACCTCATCTTGCCCCGC TGTTAGAACGCCTTCAAGAATAGCTCCAAGAAATAAAACTGAACCTGAGA TTTCTAGTCTTTCAAGCTTGATGTCTGCCACAAAGCTTTCTTCTAGTATT TCACCGGCTAGTTCTATCAGTGACTGGTCTTCGTCAGAGTCATCTTCAAC AATTTCTATGGCTAAACGTGTATGTAATAGTTCAAGGTCCAGCATTGATA GTGGCTCAAGCAGAAAGGTTTTATTGGATGCTGAAGCAGATCAAGGTACA CATTCTCACATTCCACATGATTCAAGCTTAGAAAGTCAAGAGAACCAGCT TCATGGGTTAATTAGTCAAAAGGAAAGGACAACTCCTGGAGTGGCGGTTC TTCCTCCAGCTCCCAAGAAACCTTCAGGCCTTCGTCTTCCTTCACCGAAG ATTGGTTTCTTTGATGGGGTGAAGCCCTTAGTGCGCACTCCACGGGGGGG AATGCAACCACGCTCTGTTGTACCTGGTAGCTTGCCAAAACATGTAGCTC TAAGTCCAAATGAAGGCCAAAACAAAACGGAAATTGGAAAGCTTCATGAT TCTAAATCTATCGCATCAATTGAAAATACAAAACCCAATAACCAGCAAGC TCCCATTCCAAATCCTTTTCATGAATCATCAGATGTTGCAATTAAGACAT CTAACGGTGCGCAGAATAAAAGCTCTTCCGACATGCCCTTGGGTGCTGAT GAAAATACATCACTCATCCATGTAGTAGAGAAAACCCATCATGATTTGCT ACCACTTAAAGGTGTCAATAACCAGGCAAATTATCATCATGATGATCAAA TTGATAGTTTGAGCAAACAAGTTGGACATATGGACATAAATTTTGAGACA CGGGAAAAGTTTAACTGTGATACCCTTTCTTTATTGCAGACTGATATCAG CTCCCAAGATAACTCTAATGGTCTGGAGTTATCTAATCACGAAGAGATTG ATTGTCCTAAGAAAGAAGAATTATTAAAGAGTTCATCTACTAAATGTCTC TCTGCCTCCCCAACTAACTTTGATGTGGCAGCTTCAGCGAGGAGTCCCTT TGCAGTCAAGGATTCCTTTTGCAACATGGATGGCGTTGTCTTTACAGAAT CAACAGTTTCAGAACCAAAATCGAAGACCGACTTGCCTGTTACCGATAGC ATTATTTTGAAGGAAAACAACTAA back to top
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