Phvul.001G198000.3
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Phvul.001G198000.3 vs. DB:Swiss
Match: RHF2A_ARATH (E3 ubiquitin-protein ligase RHF2A OS=Arabidopsis thaliana OX=3702 GN=RHF2A PE=2 SV=1) HSP 1 Score: 329.717 bits (844), Expect = 6.070e-110 Identity = 187/354 (52.82%), Postives = 236/354 (66.67%), Query Frame = 1
Query: 16 ESKMISAAAFVEGGIQDSCDDACSICLEDFCASDPSTLTNCKHEFHLHCILEWCQRSAQCPMCWQSISLKDPTSQELFEAVEQERKLRAIPSRNATIFHHPAFSDFELQHLRMSINDSELQDRILQHLAVAAAMRRANQHGRRAGQRTRSSAHGHPQSLVLSNQTIAPALSPDSAAEEENDQTRIHNAIPSTPIKSERNEALQRILHVQTQXXXXXXXXXXXXRQRIYSNDRGSTTRASSVNEDRAEPSELQPHSDSLRSRLNAVSTRYKESFSKGARGWKERLFCRSCSMSELGSETRRREMNAEIASVSGLKESRECSENSKSVVGTSLSSHMEECSIQEVSNQNDVEASGE 1077
E + SAAAFVEGGIQD+CDDACSICLE FC SDPSTLT+CKHE+HL CILEWCQRS+QCPMCWQSISLKDPTSQEL EAVEQER R P+RNATIF HP DFELQHL + ++++E+++RI+QHLA AAAM RA RR G R+RSS+ GH Q +V S+Q A + P Q + + + P + AL H ++S S SN R ++S +DRA PSELQ S+SL+SRLNAVSTRYKES SK R WK+RLF R+ SM++LGSE +RE++A IA+VS + E E ENS+ T+ S + E E +N+++ A+G+
Sbjct: 11 EGHLTSAAAFVEGGIQDACDDACSICLESFCESDPSTLTSCKHEYHLQCILEWCQRSSQCPMCWQSISLKDPTSQELLEAVEQERNFRFNPTRNATIFRHPTLGDFELQHLPVGVDNAEIEERIIQHLAAAAAMGRARHGVRREGHRSRSSSQGHQQFMVFSSQPNASSPPPHPPMPSSPSQRDESDTVSNLP-----HNALGEGSHQSNTQPPTSSHPRQVSPSASDSNSR-PLNQSSPSEQDRAGPSELQSFSESLKSRLNAVSTRYKESISKNTRNWKDRLFSRNTSMADLGSEV-KREVSAGIATVSRMMERLETRENSRP--STASVSDVSENHTPETNNEHNRAAAGD 355
BLAST of Phvul.001G198000.3 vs. DB:Swiss
Match: RHF1A_ARATH (E3 ubiquitin-protein ligase RHF1A OS=Arabidopsis thaliana OX=3702 GN=RHF1A PE=1 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 5.930e-27 Identity = 48/81 (59.26%), Postives = 59/81 (72.84%), Query Frame = 1
Query: 37 AAFVEGGIQDSCDDACSICLEDFCASDPSTLTNCKHEFHLHCILEWCQRSAQCPMCWQSISLKDPTSQELFEAVEQERKLR 279
A V ++ DDACSICLE F DPST+T+CKHE+HL CI+EW QRS +CP+CWQ L+DP SQEL AVE+ER L+
Sbjct: 31 ALVVASDDDNNTDDACSICLEPFTLQDPSTVTSCKHEYHLQCIIEWSQRSKECPICWQLFVLRDPASQELLAAVEKERLLK 111
BLAST of Phvul.001G198000.3 vs. DB:Swiss
Match: RHB1A_ARATH (Probable E3 ubiquitin-protein ligase RHB1A OS=Arabidopsis thaliana OX=3702 GN=RHB1A PE=2 SV=1) HSP 1 Score: 62.003 bits (149), Expect = 5.338e-10 Identity = 24/52 (46.15%), Postives = 34/52 (65.38%), Query Frame = 1
Query: 73 DDACSICLEDFCASDPSTLTNCKHEFHLHCILEWCQRSAQCPMCWQSISLKD 228
+D C IC ED+ +P T C+HEFHL C+LEW +RS +CP+C + + D
Sbjct: 136 EDCCPICFEDYDVENPRLTTKCEHEFHLSCLLEWIERSDRCPICDKEVVFDD 187
BLAST of Phvul.001G198000.3 vs. DB:Swiss
Match: AIRP1_ARATH (E3 ubiquitin-protein ligase AIRP1 OS=Arabidopsis thaliana OX=3702 GN=AIRP1 PE=1 SV=1) HSP 1 Score: 57.7658 bits (138), Expect = 6.976e-9 Identity = 24/51 (47.06%), Postives = 33/51 (64.71%), Query Frame = 1
Query: 76 DACSICLEDFCASDPSTLTNCKHEFHLHCILEWCQRSAQCPMCWQSISLKD 228
D C ICLE++ +P LT C H+FHL CIL W +RS CP+C + + L +
Sbjct: 102 DECPICLEEYEIDNPKLLTKCGHDFHLACILAWMERSEACPVCDKELVLTE 152
BLAST of Phvul.001G198000.3 vs. DB:Swiss
Match: RING3_ARATH (E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana OX=3702 GN=At3g02290 PE=2 SV=1) HSP 1 Score: 58.9214 bits (141), Expect = 9.501e-9 Identity = 21/52 (40.38%), Postives = 32/52 (61.54%), Query Frame = 1
Query: 73 DDACSICLEDFCASDPSTLTNCKHEFHLHCILEWCQRSAQCPMCWQSISLKD 228
+D C CLE++ + +P +T C H FHL CI EW +RS CP+C + + +
Sbjct: 178 EDVCPTCLEEYTSENPKIVTKCSHHFHLSCIYEWMERSENCPVCGKVMEFNE 229
BLAST of Phvul.001G198000.3 vs. DB:Swiss
Match: RNF6_MOUSE (E3 ubiquitin-protein ligase RNF6 OS=Mus musculus OX=10090 GN=Rnf6 PE=1 SV=1) HSP 1 Score: 56.9954 bits (136), Expect = 1.713e-7 Identity = 19/63 (30.16%), Postives = 33/63 (52.38%), Query Frame = 1
Query: 28 ISAAAFVEGGIQDSCDDACSICLEDFCASDPSTLTNCKHEFHLHCILEWCQRSAQCPMCWQSI 216
+S ++ + G+ CS+C+ D+ A + C HEFH+HCI W + CP+C + +
Sbjct: 596 LSTRSYEQDGVDSELGKVCSVCISDYVAGNKLRQLPCLHEFHIHCIDRWLSENCTCPVCRRPV 658
BLAST of Phvul.001G198000.3 vs. DB:Swiss
Match: RN181_DROME (E3 ubiquitin-protein ligase RNF181 homolog OS=Drosophila melanogaster OX=7227 GN=CG7694 PE=2 SV=1) HSP 1 Score: 52.373 bits (124), Expect = 4.818e-7 Identity = 25/66 (37.88%), Postives = 33/66 (50.00%), Query Frame = 1
Query: 49 EGGIQDSCDDACSICLEDFCASDPSTLTNCKHEFHLHCILEWCQRSAQCPMCWQSISLKDPTSQEL 246
EGG D CS+C E + CKHEFH CIL W +++ CP+C + DP +EL
Sbjct: 64 EGG-----DLECSVCKEPAEEGQKYRILPCKHEFHEECILLWLKKTNSCPLCRYELETDDPVYEEL 124 The following BLAST results are available for this feature:
BLAST of Phvul.001G198000.3 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot) Total hits: 7
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
Sequences
The
following sequences are available for this feature:
protein sequence of Phvul.001G198000.3_Pv_G19833_v2.1 >Phvul.001G198000.3_Pv_G19833_v2.1 ID=Phvul.001G198000.3_Pv_G19833_v2.1; Name=Phvul.001G198000.3_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=379bpback to top mRNA from alignment at Chr01:45727485..45731555- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Phvul.001G198000.3_Pv_G19833_v2.1 ID=Phvul.001G198000.3_Pv_G19833_v2.1; Name=Phvul.001G198000.3; organism=Phaseolus vulgaris; type=mRNA; length=4071bp; location=Sequence derived from: Chr01:45727485..45731555- (Phaseolus vulgarisback to top Coding sequence (CDS) from alignment at Chr01:45727485..45731555- >Phvul.001G198000.3_Pv_G19833_v2.1 ID=Phvul.001G198000.3_Pv_G19833_v2.1; Name=Phvul.001G198000.3; organism=Phaseolus vulgaris; type=CDS; length=1137bp; location=Sequence derived from: Chr01:45727485..45731555- (Phaseolus vulgarisback to top |