Phvul.001G212400.2

Transcript Overview
NamePhvul.001G212400.2
Unique NamePhvul.001G212400.2_Pv_G19833_v2.1
TypemRNA
OrganismPhaseolus vulgaris (Common bean)
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr01supercontigChr01:46874925..46877092 +Phaseolus vulgaris G19833 genome v2.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Phaseolus vulgaris G19833 genome v2.12019-09-17
InterProScan: Phaseolus vulgaris G19833 genome v2.12019-10-18
BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot2019-10-18
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
pvpvR030Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pspvL202Pisum sativum Cameor genome v1aPisum sativum
pspvL210Pisum sativum Cameor genome v1aPisum sativum
pvvuR000Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pvvuR036Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pspvL591Pisum sativum Cameor genome v1aPisum sativum
caipvL0234Cicer arietinum ICC 4958 genome v2Cicer arietinum
caipvL0372Cicer arietinum ICC 4958 genome v2Cicer arietinum
crpvL225Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
crpvL339Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
capvL193Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
capvL313Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccpvL0653Cajanus cajan Asha genome v1.0Cajanus cajan
anpvL0689Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0747Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0915Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0920Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL1259Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
aspvL406Vigna angularis Jingnong 6 genome v1.1Vigna angularis
aspvL496Vigna angularis Jingnong 6 genome v1.1Vigna angularis
pvzwsR020Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvzwsR027Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvzwsR061Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvvfhR002Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvvfhR044Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvvfhR058Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvtifR001Vicia faba cv. Tiffany genome v1.0Vicia faba
pvtifR039Vicia faba cv. Tiffany genome v1.0Vicia faba
pvtifR054Vicia faba cv. Tiffany genome v1.0Vicia faba
pvvrvR022Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvrvR058Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvuaR000Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvssR007Vicia sativa cv. Studenica genome v1.0Vicia sativa
pvvuaR042Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvssR057Vicia sativa cv. Studenica genome v1.0Vicia sativa
pvvssR085Vicia sativa cv. Studenica genome v1.0Vicia sativa
canpvL176Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canpvL280Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjpvL356Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjpvL462Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carpvL176Cicer arietinum
carpvL290Cicer arietinum
ccapvL246Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapvL350Cajanus cajan cv. Asha genome v2.0Cajanus cajan
pvvumR022Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvumR063Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvvaR001Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvvaR011Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvvaR070Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvasR051Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvstR036Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvvasR087Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvstR079Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvpvfR000Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR039Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvvunR000Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
pvvunR032Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
PvulFLAVERTChr07.1001353Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Phvul.001G212400Phvul.001G212400_Pv_G19833_v2.1Phaseolus vulgarisgene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.001G212400.2.v2.1.five_prime_UTR.1Phvul.001G212400.2.v2.1.five_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgarisfive_prime_UTR
Phvul.001G212400.2.v2.1.five_prime_UTR.2Phvul.001G212400.2.v2.1.five_prime_UTR.2_Pv_G19833_v2.1Phaseolus vulgarisfive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.001G212400.2.v2.1.CDS.1Phvul.001G212400.2.v2.1.CDS.1_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.001G212400.2.v2.1.CDS.2Phvul.001G212400.2.v2.1.CDS.2_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.001G212400.2.v2.1.CDS.3Phvul.001G212400.2.v2.1.CDS.3_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.001G212400.2.v2.1.CDS.4Phvul.001G212400.2.v2.1.CDS.4_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.001G212400.2.v2.1.CDS.5Phvul.001G212400.2.v2.1.CDS.5_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.001G212400.2.v2.1.CDS.6Phvul.001G212400.2.v2.1.CDS.6_Pv_G19833_v2.1Phaseolus vulgarisCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.001G212400.2.v2.1.three_prime_UTR.1Phvul.001G212400.2.v2.1.three_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgaristhree_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Phvul.001G212400.2Phvul.001G212400.2_Pv_G19833_v2.1-proteinPhaseolus vulgarispolypeptide
Phvul.001G212400.2_Pv_G19833_v2.1Phvul.001G212400.2_Pv_G19833_v2.1Phaseolus vulgarispolypeptide


Homology
The following BLAST results are available for this feature:
BLAST of Phvul.001G212400.2 vs.
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022143Protein of unknown function DUF3675PFAMPF12428DUF3675coord: 30..139
e-value: 7.8E-33
score: 113.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 149..173

Sequences
The following sequences are available for this feature:

protein sequence of Phvul.001G212400.2_Pv_G19833_v2.1

>Phvul.001G212400.2_Pv_G19833_v2.1 ID=Phvul.001G212400.2_Pv_G19833_v2.1; Name=Phvul.001G212400.2_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=174bp
MSPEKRRTKESYRSVPNIWCPCYGDWQYEPGYSAPPKKSKINDEAMSIRE
EEEESNARIEITVEGIAMESDYSECSSAADRSASCCRSLAIAFTLVLLVR
HFFAVLSNGTEDYPFTLLTVIILKTSGIIIPMYIVIKIIGAVQSSSQQYQ
DSDDDDTSMSEDEIQHNVNLRHS*
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mRNA from alignment at Chr01:46874925..46877092+

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Phvul.001G212400.2_Pv_G19833_v2.1 ID=Phvul.001G212400.2_Pv_G19833_v2.1; Name=Phvul.001G212400.2; organism=Phaseolus vulgaris; type=mRNA; length=2168bp; location=Sequence derived from: Chr01:46874925..46877092+ (Phaseolus vulgaris
GCAGAAAGGAAAACCAGAAAAACAGAGTACCCGACAGAATTTGAAAACAA
GGCTGAAATTTGAAGAAAGAGAGATCACTGGTTATGAATTATATGGCAGA
TGTTGTTTTGCTAGTCGATGATTTGAAACTGCTTTCTGGGATTCCTCGCT
GTAGAATTTGTCATGAAGAAGAGTTTGAAAGCATAGAAACCTTGGAAGCA
CCTTGTGCTTGCTCTGGAACCGTTAAGGTAAACACAAAATACAAACTTCT
TAATCTTAAACACTTGTTTTTGGATTTTGTTAATAACTTACTATGCTTCG
CGCGAGTTTTGATTTTAATTCTCCTCAATAACTGCGTTTTTGTTGGGCAG
TTTGCTCATAGAGATTGCATACAAAGATGGTGCAACGAGAAAGGAAATAC
AACCTGTGAAATATGTCTCCAGGTATGAACTTTAGTCATTCAATTTTATT
TCTTAAGTTCTGTTTTTGGTTTTGCACTCTGTTCATAACGTTATTTTGAT
CTTGTTTTAATGAGTTATGATCAAAGTTGATTTCTTGACGGCAATCAATT
TTTTGTTTAGAAAAAAGAAGGACGAAAGAGAGTTATCGGAGTGTACCTAA
TATTTGGTGTCCTTGTTATGGTGATTGGGTGCGCTTCCTTATCTGATTTT
GACATAGAAACGATAATAAGTTCCTTTCTTTCTTCTTTTCCCCTTTTGTT
TATTTTCAAACCAGAGTTGCTTTTGTTTTTGTCTTTTGCTTAACTTTGCT
CAATATTGAAGTCTCTCCCCATTAGTATACTATTTCTGTATCAACACCTA
TCTGTTTCTCCAAAAGACGAAGTTTCACTTTTTGTCTTTTTTAATCTTCG
ATTTCATTTGATACACTGTAGGAAAACGGGATTGGAATTTGTTTGATCAT
ACATTCAATGAACTGAGCCCCATTTATTGCATAATTGCTTATTTGTCTAA
AAAGGGCAATTTGTGATGAGCATATAGATTGATACTAATTTTGTTTTTGC
AGCAATATGAACCCGGATATTCAGCTCCACCCAAGAAGTCTAAGATAAAT
GATGAAGCAATGTCCATTAGGTATTTTTTCATAATATATTATGTATATTT
CCCGCGTCCAATTCAATCAAAGTGATCTTATAACTAATTATTTAATCGAT
CAACAATTTTCATAACGCTTGGCTACGTGAGAGGGAGCAACTAATAAAAG
CTAATATTATTATTAAAATAATGTACTTTTGAAGGGAGGAAGAAGAAGAG
TCAAATGCAAGAATAGAGATAACGGTGGAAGGAATTGCAATGGAAAGCGA
TTACTCGGAATGCAGTTCAGCCGCTGACAGAAGTGCGTCTTGCTGTCGAT
CACTTGCAATAGCTGTAAGCATTATCTTATTAGCTTTTTTTCTTTTAACG
CGTTCCTACTTCTGAATCAATATAGCCAAGGCAAAACCAACATGGTTGCT
TGTGTTGTGCAATAAAAAATAATTAGTTAAGTTGGGAAAAGCAACGAGTC
AGGGTGGACTCAGACTGCATTGCCAACGCAGGGTCACCCCCAAGAGTTGA
AATCAACATTTTCTCTTTCAAACAAACAAACAAACCTTGAATGTGACTCA
TCATTTACTTGTGTAACGCGTAGACATGCTGAAACTAGCTACCTTTCCTC
TGCAGTTTACACTTGTCTTACTCGTAAGACATTTTTTCGCAGTGCTTTCA
AATGGAACGGAAGATTACCCATTTACACTGCTTACTGTAAGTACCTTCCA
GTTTTAAATATCAATGGAAAACAAACATTTACAATCTTCACCTACGGACA
GCTAAACTAATGAAGGTTAATATACCATTTTTGATGCAGGTAATTATATT
AAAGACTAGTGGAATCATTATACCTATGTACATAGTTATTAAGATTATTG
GAGCCGTTCAGAGCAGTAGTCAGCAGTATCAGGATTCTGATGATGACGAC
ACATCAATGTCTGAAGATGAGATACAACATAATGTAAATTTAAGACATTC
ATAGATTATTTGTTTACTGTATAAGAGCATTATGTGATGCTCGTCAAATA
ACATTTTGCGTCACAATTTAAGATTATGGAATACAGATCGGAATGCACAT
TCCCTTACCGCATGTAATACCAAGACTAAAGTACTAGGTATCTTAAAAAA
TTAATAACATGTATCTTA
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Coding sequence (CDS) from alignment at Chr01:46874925..46877092+

>Phvul.001G212400.2_Pv_G19833_v2.1 ID=Phvul.001G212400.2_Pv_G19833_v2.1; Name=Phvul.001G212400.2; organism=Phaseolus vulgaris; type=CDS; length=522bp; location=Sequence derived from: Chr01:46874925..46877092+ (Phaseolus vulgaris
ATGTCTCCAGAAAAAAGAAGGACGAAAGAGAGTTATCGGAGTGTACCTAA
TATTTGGTGTCCTTGTTATGGTGATTGGCAATATGAACCCGGATATTCAG
CTCCACCCAAGAAGTCTAAGATAAATGATGAAGCAATGTCCATTAGGGAG
GAAGAAGAAGAGTCAAATGCAAGAATAGAGATAACGGTGGAAGGAATTGC
AATGGAAAGCGATTACTCGGAATGCAGTTCAGCCGCTGACAGAAGTGCGT
CTTGCTGTCGATCACTTGCAATAGCTTTTACACTTGTCTTACTCGTAAGA
CATTTTTTCGCAGTGCTTTCAAATGGAACGGAAGATTACCCATTTACACT
GCTTACTGTAATTATATTAAAGACTAGTGGAATCATTATACCTATGTACA
TAGTTATTAAGATTATTGGAGCCGTTCAGAGCAGTAGTCAGCAGTATCAG
GATTCTGATGATGACGACACATCAATGTCTGAAGATGAGATACAACATAA
TGTAAATTTAAGACATTCATAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR022143DUF3675