Phvul.001G257800.1

Transcript Overview
NamePhvul.001G257800.1
Unique NamePhvul.001G257800.1_Pv_G19833_v2.1
TypemRNA
OrganismPhaseolus vulgaris (Common bean)
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr01supercontigChr01:50657021..50659053 -Phaseolus vulgaris G19833 genome v2.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Phaseolus vulgaris G19833 genome v2.12019-09-17
InterProScan: Phaseolus vulgaris G19833 genome v2.12019-10-18
BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot2019-10-18
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
pvpvR004Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvuR000Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pvvuR021Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pspvL399Pisum sativum Cameor genome v1aPisum sativum
pspvL708Pisum sativum Cameor genome v1aPisum sativum
caipvL0536Cicer arietinum ICC 4958 genome v2Cicer arietinum
crpvL488Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
capvL426Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccpvL0004Cajanus cajan Asha genome v1.0Cajanus cajan
ccpvL0260Cajanus cajan Asha genome v1.0Cajanus cajan
anpvL0250Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0360Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0405Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0828Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
aspvL002Vigna angularis Jingnong 6 genome v1.1Vigna angularis
aspvL486Vigna angularis Jingnong 6 genome v1.1Vigna angularis
pvzwsR030Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvzwsR072Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvvfhR011Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvvfhR021Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvtifR011Vicia faba cv. Tiffany genome v1.0Vicia faba
pvtifR020Vicia faba cv. Tiffany genome v1.0Vicia faba
pvvrvR019Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvrvR055Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvuaR000Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvssR030Vicia sativa cv. Studenica genome v1.0Vicia sativa
pvvuaR019Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvssR043Vicia sativa cv. Studenica genome v1.0Vicia sativa
canpvL397Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjpvL221Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjpvL453Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carpvL409Cicer arietinum
ccapvL001Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapvL796Cajanus cajan cv. Asha genome v2.0Cajanus cajan
pvvumR001Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvumR041Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvumR063Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvvaR017Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvvaR018Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvvaR066Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvasR001Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvasR016Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvstR001Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvvasR041Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvstR036Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvpvfR000Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR013Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR024Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvvunR000Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
pvvunR021Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
Cr_13054.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
rna-XM_004502283.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
LR48_mrnaVigan03g312000Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vigan.04G424400.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
rna-XM_014651448.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
evm.model.Chr01.2292Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vigun01g243400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-TanjilR_09097Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
evm.model.Chr03.3695Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Psat07G0201000-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
rna-KK1_025195Cajanus cajan Asha genome v1.0Cajanus cajan
Vigst.04G286300.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Vigst.01G140100.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Psat7g079800.1Pisum sativum Cameor genome v1aPisum sativum
jg53607.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Va03G084790.2Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Va01G037970.2Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
rna-XM_022778829.1Vigna radiata cv. VC1973A genome v6.0Vigna radiata
jg30364.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vfaba.Hedin2.R1.2g113560.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
XM_058931062.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Vigun03g171800.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Vfaba.Tiffany.R1.2g093160.1Vicia faba cv. Tiffany genome v1.0Vicia faba
XM_058879911.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Vum_01G01524.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Ca_11307Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
LR48_mrnaVigan01g092200Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Psat05G0281700-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
rna-TanjilR_11015Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vum_04G03189.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Vigun01g243400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
rna-KK1_019924Cajanus cajan Asha genome v1.0Cajanus cajan
Ca_13817.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Vigan.01G196100.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Vigun03g171800.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Phvul.002G177300.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
PvulFLAVERTChr02.1004Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
PvulFLAVERTChr01.1001728Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Phvul.001G257800Phvul.001G257800_Pv_G19833_v2.1Phaseolus vulgarisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Phvul.001G257800.1Phvul.001G257800.1_Pv_G19833_v2.1-proteinPhaseolus vulgarispolypeptide
Phvul.001G257800.1_Pv_G19833_v2.1Phvul.001G257800.1_Pv_G19833_v2.1Phaseolus vulgarispolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.001G257800.1.v2.1.CDS.5Phvul.001G257800.1.v2.1.CDS.5_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.001G257800.1.v2.1.CDS.4Phvul.001G257800.1.v2.1.CDS.4_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.001G257800.1.v2.1.CDS.3Phvul.001G257800.1.v2.1.CDS.3_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.001G257800.1.v2.1.CDS.2Phvul.001G257800.1.v2.1.CDS.2_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.001G257800.1.v2.1.CDS.1Phvul.001G257800.1.v2.1.CDS.1_Pv_G19833_v2.1Phaseolus vulgarisCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.001G257800.1.v2.1.three_prime_UTR.1Phvul.001G257800.1.v2.1.three_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgaristhree_prime_UTR


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.001G257800.1.v2.1.five_prime_UTR.1Phvul.001G257800.1.v2.1.five_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgarisfive_prime_UTR


Homology
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BLAST of Phvul.001G257800.1 vs. DB:Swiss
Match: AIRP2_ARATH (E3 ubiquitin-protein ligase AIRP2 OS=Arabidopsis thaliana OX=3702 GN=AIRP2 PE=1 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 4.459e-74
Identity = 114/231 (49.35%), Postives = 146/231 (63.20%), Query Frame = 1 
Query:   28 RLPYHDSLKVLEADIQHANALAAAIPRAKGGTILQMKLVYNQLAPLVLLFLQWMDCSCAGFLHKYLNLFHVIIYKVHNDGRSNMSTHGRKATIGDFYAVILPSLQRLHGSLEKLEAVEEGQTSIEGSSYGNKLIEASGRLTNIDLQREDECGICLEPCTKMVLPGCCHAMCIKCYRKWNRKSESCPFCRGSLRRVNSEDLWVLTCDDDVVDAETVSKEDLLRFYLYISKLP 720
            R  + DSLK LEADIQ AN LA+  P    G  +QM+L Y+  A L L  LQW DC  AG L     L  ++IYK + DG++ MS H RK +I +FY V+ PSL +LHG +  +E  E  Q  I    Y  K     G+++ IDL+RE+ECGICLE   K+VLP C H+MCI CYR W  +S+SCPFCRGSL+RVNS DLW+ TC  ++ D   + KE+L R  +YI KLP
Sbjct:    2 RKSFKDSLKALEADIQFANTLASEYPEEYDGGYVQMRLSYSPAAHLFLFLLQWTDCHFAGAL----GLLRILIYKAYVDGKTTMSLHERKTSIREFYDVLFPSLLQLHGGITDVE--ERKQKEICDKRYRKKDRTDKGKMSEIDLEREEECGICLEIRNKVVLPTCNHSMCINCYRNWRARSQSCPFCRGSLKRVNSGDLWIYTCSAEIADLPAIYKENLKRLLIYIDKLP 226
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BLAST of Phvul.001G257800.1 vs. DB:Swiss
Match: RN141_CHICK (RING finger protein 141 OS=Gallus gallus OX=9031 GN=RNF141 PE=2 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 3.086e-7
Identity = 35/104 (33.65%), Postives = 51/104 (49.04%), Query Frame = 1 
Query:  352 GSLEKLEAVEEGQTSIEGSSYGNKLIEASGRLTNIDLQREDECGICLEPCTKMVLPGCCHAMCIKCYRKWNRKSESCPFCRGSLRRVNSEDLWVLT---CDDDV 654
            G L + E  EE   S+   S     +   GRL       EDEC IC++    ++LP C H+ C KC  KW+ +  SCP CR  +    + D WV++    +DD+
Sbjct:  116 GVLAQSETSEEAAESLTSVSSSQASLWM-GRLKQ--PTDEDECCICMDGRVDLILP-CAHSFCQKCIDKWSDRHRSCPVCRRQV--TGAGDSWVVSDAPTEDDI 213
The following BLAST results are available for this feature:
BLAST of Phvul.001G257800.1 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot)
Total hits: 2
Match NameE-valueIdentityDescription
AIRP2_ARATH4.459e-7449.35E3 ubiquitin-protein ligase AIRP2 OS=Arabidopsis t... [more]
RN141_CHICK3.086e-733.65RING finger protein 141 OS=Gallus gallus OX=9031 G... [more]
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InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 160..197
e-value: 7.3E-4
score: 28.8
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 158..198
e-value: 5.1E-8
score: 33.1
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 160..198
score: 11.634
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 137..208
e-value: 3.5E-12
score: 47.5
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 175..184
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 151..202

Sequences
The following sequences are available for this feature:

protein sequence of Phvul.001G257800.1_Pv_G19833_v2.1

>Phvul.001G257800.1_Pv_G19833_v2.1 ID=Phvul.001G257800.1_Pv_G19833_v2.1; Name=Phvul.001G257800.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=257bp
MAMIPYQLYRLPYHDSLKVLEADIQHANALAAAIPRAKGGTILQMKLVYN
QLAPLVLLFLQWMDCSCAGFLHKYLNLFHVIIYKVHNDGRSNMSTHGRKA
TIGDFYAVILPSLQRLHGSLEKLEAVEEGQTSIEGSSYGNKLIEASGRLT
NIDLQREDECGICLEPCTKMVLPGCCHAMCIKCYRKWNRKSESCPFCRGS
LRRVNSEDLWVLTCDDDVVDAETVSKEDLLRFYLYISKLPKDHPEALFLM
YYEYLI*
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mRNA from alignment at Chr01:50657021..50659053-

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Phvul.001G257800.1_Pv_G19833_v2.1 ID=Phvul.001G257800.1_Pv_G19833_v2.1; Name=Phvul.001G257800.1; organism=Phaseolus vulgaris; type=mRNA; length=2033bp; location=Sequence derived from: Chr01:50657021..50659053- (Phaseolus vulgaris
CATCGTTTGTGTTACGGCATTCCTTACCTCACCCACCGCAACACCCAAAC
ACCGAAACCCAACCACACTCTCCTCAACTCATATATCCTCTCAAAAAGCT
TCAAACTTTGGGTCACAAAACTTCAAAAAACCTAGCCCTACTTTTTCTTC
TCTCGATTCTTCACTTCTCTTTCTTGGTTTTCCTTTTTTTTAGGTGGGGA
TTAGGATAAGGGTCTTCATCAATTTTCATCACTTCTCTCTCTTTCTGTAA
CCTGTTCAGTTTTCTCTTTCTTCCGTGCTTCAGCTTTTCACAAAGTAAAG
GGAAAGATGGCAATGATTCCGTACCAACTTTACCGTTTGCCTTACCACGA
TTCCCTCAAAGTACTTGAGGCTGATATACAGCACGCCAATGCTTTGTGAG
TCTGATATTTCCCCTCCCCTTTAAGTTTTTTTCATCAATTCATGAACTTT
CCTTCTGTGTATGTTGTTTTGGGTACTAAGAAAAAAGTGGGTGGGAGAGG
TTCTTCTGGTTTTTGTTGGTTATCAACAGGGTTATCAATAGTTTTCAAGT
TGGTTACTTTCAATAAAAGGAACACGATCAACTTATACCAAAAGGGTCAT
TTGAATTTGTTGCTCATGATAGGAATTTGCTTGTCGCTGGTGAATTTGAT
TGTGGTTTTTGTATTTGTTTTGAATTTGGATTGTGTTGTGCTACCCTCTT
CTAGGGCTGCTGCAATTCCCAGAGCCAAGGGTGGGACTATTCTCCAAATG
AAATTGGTTTACAATCAGTTGGCTCCTCTCGTCCTGTTATTTCTACAATG
GATGGATTGTTCTTGCGCAGGCTTTCTCCATAAGTATCTCAACCTCTTCC
ATGTGATTATATACAAGGTACCCATGTTTTTTGTGGTGATCCTTTTATGT
TTTACTGTTTTCGACAGTTTTGGTTTATAATACCCATGTTTCATGTTTTT
GATGTTGTTGCTCTCATAATTTACAAGGTACACAATGATGGTAGATCAAA
CATGTCTACACATGGAAGGAAGGCTACCATTGGGGACTTTTATGGTGCGT
GAATGTTTGACTTTGAAAAAGAAAAACCTTTTTTAACTTTTTCTTTAGTC
AAAAGTATAATCCGTTTGTGGCTGTGCTATTCCTCACATTGTTTATGTTA
TCACAAATTGAACTTTTAGCTGTTATATTGCCATCTCTCCAACGACTTCA
TGGTAGTTTGGAGAAGCTGGAGGCTGTTGAAGAAGGACAAACAAGCATAG
AAGGTTCAAGCTATGGCAACAAGTTGATTGAAGCAAGTGGGAGACTCACC
AATATTGATTTGCAAAGAGAAGATGAATGTGGAATTTGCTTAGAGCCTTG
CACCAAAATGGTTTTACCTGGTTGCTGCCATGCCATGTGTATCAAATGCT
ACCGCAAGTGGTAATTGAAATATTTGTTCATGCCCCATATGATCAAGTTT
CAATTTTCTATGCCATTTCCAATGGTTTATCATTTCTGATTGCAGGAACA
GAAAGTCAGAGTCTTGTCCTTTTTGTCGTGGGAGCTTGAGGAGAGTTAAT
TCAGAGGATCTTTGGGTACTAACTTGTGATGATGATGTTGTTGATGCTGA
AACAGTTTCTAAAGAGGACTTGTTGCGTTTTTACCTCTATATCAGCAAGC
TGCCAAAAGATCACCCAGAAGCACTTTTCCTAATGTATTATGAATACCTC
ATCTAATTATTGAGTAAGAACAAAAAAAATTGTACAGATAGGAAGTTCCG
GAATACAAATGTGAATAGAGTCTGGTTCAGAAAGAAACTACTCTGGTAGT
GTAATCACAGTTGTTCTGGTAAGAGATGTTTCTGGTTTTTTGGCCCAGAA
AAACCATTCTTCTTACCCCTGTGATATATGTCTCCATTGTAGACATTGTT
CTTGCAATTAACCTGGAATCCCTTGTATGAAGGATCCATTAAGCTAAATA
TTCTTGTATGTTGAGAAAATGATTCTGTTCTGTGACTGTAATGTATGTTG
GGAATTTGAACACTTGAAAATCATCAAGAGGAA
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Coding sequence (CDS) from alignment at Chr01:50657021..50659053-

>Phvul.001G257800.1_Pv_G19833_v2.1 ID=Phvul.001G257800.1_Pv_G19833_v2.1; Name=Phvul.001G257800.1; organism=Phaseolus vulgaris; type=CDS; length=771bp; location=Sequence derived from: Chr01:50657021..50659053- (Phaseolus vulgaris
ATGGCAATGATTCCGTACCAACTTTACCGTTTGCCTTACCACGATTCCCT
CAAAGTACTTGAGGCTGATATACAGCACGCCAATGCTTTGGCTGCTGCAA
TTCCCAGAGCCAAGGGTGGGACTATTCTCCAAATGAAATTGGTTTACAAT
CAGTTGGCTCCTCTCGTCCTGTTATTTCTACAATGGATGGATTGTTCTTG
CGCAGGCTTTCTCCATAAGTATCTCAACCTCTTCCATGTGATTATATACA
AGGTACACAATGATGGTAGATCAAACATGTCTACACATGGAAGGAAGGCT
ACCATTGGGGACTTTTATGCTGTTATATTGCCATCTCTCCAACGACTTCA
TGGTAGTTTGGAGAAGCTGGAGGCTGTTGAAGAAGGACAAACAAGCATAG
AAGGTTCAAGCTATGGCAACAAGTTGATTGAAGCAAGTGGGAGACTCACC
AATATTGATTTGCAAAGAGAAGATGAATGTGGAATTTGCTTAGAGCCTTG
CACCAAAATGGTTTTACCTGGTTGCTGCCATGCCATGTGTATCAAATGCT
ACCGCAAGTGGAACAGAAAGTCAGAGTCTTGTCCTTTTTGTCGTGGGAGC
TTGAGGAGAGTTAATTCAGAGGATCTTTGGGTACTAACTTGTGATGATGA
TGTTGTTGATGCTGAAACAGTTTCTAAAGAGGACTTGTTGCGTTTTTACC
TCTATATCAGCAAGCTGCCAAAAGATCACCCAGAAGCACTTTTCCTAATG
TATTATGAATACCTCATCTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS