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Transcript Overview
Name | Phvul.001G257800.1 |
Unique Name | Phvul.001G257800.1_Pv_G19833_v2.1 |
Type | mRNA |
Organism | Phaseolus vulgaris (Common bean) |
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
Phvul.001G257800.1 | Phvul.001G257800.1_Pv_G19833_v2.1-protein | Phaseolus vulgaris | polypeptide |
Phvul.001G257800.1_Pv_G19833_v2.1 | Phvul.001G257800.1_Pv_G19833_v2.1 | Phaseolus vulgaris | polypeptide |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Phvul.001G257800.1.v2.1.CDS.5 | Phvul.001G257800.1.v2.1.CDS.5_Pv_G19833_v2.1 | Phaseolus vulgaris | CDS |
Phvul.001G257800.1.v2.1.CDS.4 | Phvul.001G257800.1.v2.1.CDS.4_Pv_G19833_v2.1 | Phaseolus vulgaris | CDS |
Phvul.001G257800.1.v2.1.CDS.3 | Phvul.001G257800.1.v2.1.CDS.3_Pv_G19833_v2.1 | Phaseolus vulgaris | CDS |
Phvul.001G257800.1.v2.1.CDS.2 | Phvul.001G257800.1.v2.1.CDS.2_Pv_G19833_v2.1 | Phaseolus vulgaris | CDS |
Phvul.001G257800.1.v2.1.CDS.1 | Phvul.001G257800.1.v2.1.CDS.1_Pv_G19833_v2.1 | Phaseolus vulgaris | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Phvul.001G257800.1.v2.1.three_prime_UTR.1 | Phvul.001G257800.1.v2.1.three_prime_UTR.1_Pv_G19833_v2.1 | Phaseolus vulgaris | three_prime_UTR |
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Phvul.001G257800.1.v2.1.five_prime_UTR.1 | Phvul.001G257800.1.v2.1.five_prime_UTR.1_Pv_G19833_v2.1 | Phaseolus vulgaris | five_prime_UTR |
Homology
BLAST of Phvul.001G257800.1 vs. DB:Swiss
Match: AIRP2_ARATH (E3 ubiquitin-protein ligase AIRP2 OS=Arabidopsis thaliana OX=3702 GN=AIRP2 PE=1 SV=1) HSP 1 Score: 228.794 bits (582), Expect = 4.459e-74 Identity = 114/231 (49.35%), Postives = 146/231 (63.20%), Query Frame = 1
Query: 28 RLPYHDSLKVLEADIQHANALAAAIPRAKGGTILQMKLVYNQLAPLVLLFLQWMDCSCAGFLHKYLNLFHVIIYKVHNDGRSNMSTHGRKATIGDFYAVILPSLQRLHGSLEKLEAVEEGQTSIEGSSYGNKLIEASGRLTNIDLQREDECGICLEPCTKMVLPGCCHAMCIKCYRKWNRKSESCPFCRGSLRRVNSEDLWVLTCDDDVVDAETVSKEDLLRFYLYISKLP 720
R + DSLK LEADIQ AN LA+ P G +QM+L Y+ A L L LQW DC AG L L ++IYK + DG++ MS H RK +I +FY V+ PSL +LHG + +E E Q I Y K G+++ IDL+RE+ECGICLE K+VLP C H+MCI CYR W +S+SCPFCRGSL+RVNS DLW+ TC ++ D + KE+L R +YI KLP
Sbjct: 2 RKSFKDSLKALEADIQFANTLASEYPEEYDGGYVQMRLSYSPAAHLFLFLLQWTDCHFAGAL----GLLRILIYKAYVDGKTTMSLHERKTSIREFYDVLFPSLLQLHGGITDVE--ERKQKEICDKRYRKKDRTDKGKMSEIDLEREEECGICLEIRNKVVLPTCNHSMCINCYRNWRARSQSCPFCRGSLKRVNSGDLWIYTCSAEIADLPAIYKENLKRLLIYIDKLP 226
BLAST of Phvul.001G257800.1 vs. DB:Swiss
Match: RN141_CHICK (RING finger protein 141 OS=Gallus gallus OX=9031 GN=RNF141 PE=2 SV=1) HSP 1 Score: 53.5286 bits (127), Expect = 3.086e-7 Identity = 35/104 (33.65%), Postives = 51/104 (49.04%), Query Frame = 1
Query: 352 GSLEKLEAVEEGQTSIEGSSYGNKLIEASGRLTNIDLQREDECGICLEPCTKMVLPGCCHAMCIKCYRKWNRKSESCPFCRGSLRRVNSEDLWVLT---CDDDV 654
G L + E EE S+ S + GRL EDEC IC++ ++LP C H+ C KC KW+ + SCP CR + + D WV++ +DD+
Sbjct: 116 GVLAQSETSEEAAESLTSVSSSQASLWM-GRLKQ--PTDEDECCICMDGRVDLILP-CAHSFCQKCIDKWSDRHRSCPVCRRQV--TGAGDSWVVSDAPTEDDI 213
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
Sequences
The
following sequences are available for this feature:
protein sequence of Phvul.001G257800.1_Pv_G19833_v2.1 >Phvul.001G257800.1_Pv_G19833_v2.1 ID=Phvul.001G257800.1_Pv_G19833_v2.1; Name=Phvul.001G257800.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=257bp MAMIPYQLYRLPYHDSLKVLEADIQHANALAAAIPRAKGGTILQMKLVYN QLAPLVLLFLQWMDCSCAGFLHKYLNLFHVIIYKVHNDGRSNMSTHGRKA TIGDFYAVILPSLQRLHGSLEKLEAVEEGQTSIEGSSYGNKLIEASGRLT NIDLQREDECGICLEPCTKMVLPGCCHAMCIKCYRKWNRKSESCPFCRGS LRRVNSEDLWVLTCDDDVVDAETVSKEDLLRFYLYISKLPKDHPEALFLM YYEYLI* back to topmRNA from alignment at Chr01:50657021..50659053- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Phvul.001G257800.1_Pv_G19833_v2.1 ID=Phvul.001G257800.1_Pv_G19833_v2.1; Name=Phvul.001G257800.1; organism=Phaseolus vulgaris; type=mRNA; length=2033bp; location=Sequence derived from: Chr01:50657021..50659053- (Phaseolus vulgaris CATCGTTTGTGTTACGGCATTCCTTACCTCACCCACCGCAACACCCAAAC
ACCGAAACCCAACCACACTCTCCTCAACTCATATATCCTCTCAAAAAGCT
TCAAACTTTGGGTCACAAAACTTCAAAAAACCTAGCCCTACTTTTTCTTC
TCTCGATTCTTCACTTCTCTTTCTTGGTTTTCCTTTTTTTTAGGTGGGGA
TTAGGATAAGGGTCTTCATCAATTTTCATCACTTCTCTCTCTTTCTGTAA
CCTGTTCAGTTTTCTCTTTCTTCCGTGCTTCAGCTTTTCACAAAGTAAAG
GGAAAGATGGCAATGATTCCGTACCAACTTTACCGTTTGCCTTACCACGA
TTCCCTCAAAGTACTTGAGGCTGATATACAGCACGCCAATGCTTTGTGAG
TCTGATATTTCCCCTCCCCTTTAAGTTTTTTTCATCAATTCATGAACTTT
CCTTCTGTGTATGTTGTTTTGGGTACTAAGAAAAAAGTGGGTGGGAGAGG
TTCTTCTGGTTTTTGTTGGTTATCAACAGGGTTATCAATAGTTTTCAAGT
TGGTTACTTTCAATAAAAGGAACACGATCAACTTATACCAAAAGGGTCAT
TTGAATTTGTTGCTCATGATAGGAATTTGCTTGTCGCTGGTGAATTTGAT
TGTGGTTTTTGTATTTGTTTTGAATTTGGATTGTGTTGTGCTACCCTCTT
CTAGGGCTGCTGCAATTCCCAGAGCCAAGGGTGGGACTATTCTCCAAATG
AAATTGGTTTACAATCAGTTGGCTCCTCTCGTCCTGTTATTTCTACAATG
GATGGATTGTTCTTGCGCAGGCTTTCTCCATAAGTATCTCAACCTCTTCC
ATGTGATTATATACAAGGTACCCATGTTTTTTGTGGTGATCCTTTTATGT
TTTACTGTTTTCGACAGTTTTGGTTTATAATACCCATGTTTCATGTTTTT
GATGTTGTTGCTCTCATAATTTACAAGGTACACAATGATGGTAGATCAAA
CATGTCTACACATGGAAGGAAGGCTACCATTGGGGACTTTTATGGTGCGT
GAATGTTTGACTTTGAAAAAGAAAAACCTTTTTTAACTTTTTCTTTAGTC
AAAAGTATAATCCGTTTGTGGCTGTGCTATTCCTCACATTGTTTATGTTA
TCACAAATTGAACTTTTAGCTGTTATATTGCCATCTCTCCAACGACTTCA
TGGTAGTTTGGAGAAGCTGGAGGCTGTTGAAGAAGGACAAACAAGCATAG
AAGGTTCAAGCTATGGCAACAAGTTGATTGAAGCAAGTGGGAGACTCACC
AATATTGATTTGCAAAGAGAAGATGAATGTGGAATTTGCTTAGAGCCTTG
CACCAAAATGGTTTTACCTGGTTGCTGCCATGCCATGTGTATCAAATGCT
ACCGCAAGTGGTAATTGAAATATTTGTTCATGCCCCATATGATCAAGTTT
CAATTTTCTATGCCATTTCCAATGGTTTATCATTTCTGATTGCAGGAACA
GAAAGTCAGAGTCTTGTCCTTTTTGTCGTGGGAGCTTGAGGAGAGTTAAT
TCAGAGGATCTTTGGGTACTAACTTGTGATGATGATGTTGTTGATGCTGA
AACAGTTTCTAAAGAGGACTTGTTGCGTTTTTACCTCTATATCAGCAAGC
TGCCAAAAGATCACCCAGAAGCACTTTTCCTAATGTATTATGAATACCTC
ATCTAATTATTGAGTAAGAACAAAAAAAATTGTACAGATAGGAAGTTCCG
GAATACAAATGTGAATAGAGTCTGGTTCAGAAAGAAACTACTCTGGTAGT
GTAATCACAGTTGTTCTGGTAAGAGATGTTTCTGGTTTTTTGGCCCAGAA
AAACCATTCTTCTTACCCCTGTGATATATGTCTCCATTGTAGACATTGTT
CTTGCAATTAACCTGGAATCCCTTGTATGAAGGATCCATTAAGCTAAATA
TTCTTGTATGTTGAGAAAATGATTCTGTTCTGTGACTGTAATGTATGTTG
GGAATTTGAACACTTGAAAATCATCAAGAGGAA back to topCoding sequence (CDS) from alignment at Chr01:50657021..50659053- >Phvul.001G257800.1_Pv_G19833_v2.1 ID=Phvul.001G257800.1_Pv_G19833_v2.1; Name=Phvul.001G257800.1; organism=Phaseolus vulgaris; type=CDS; length=771bp; location=Sequence derived from: Chr01:50657021..50659053- (Phaseolus vulgaris ATGGCAATGATTCCGTACCAACTTTACCGTTTGCCTTACCACGATTCCCT CAAAGTACTTGAGGCTGATATACAGCACGCCAATGCTTTGGCTGCTGCAA TTCCCAGAGCCAAGGGTGGGACTATTCTCCAAATGAAATTGGTTTACAAT CAGTTGGCTCCTCTCGTCCTGTTATTTCTACAATGGATGGATTGTTCTTG CGCAGGCTTTCTCCATAAGTATCTCAACCTCTTCCATGTGATTATATACA AGGTACACAATGATGGTAGATCAAACATGTCTACACATGGAAGGAAGGCT ACCATTGGGGACTTTTATGCTGTTATATTGCCATCTCTCCAACGACTTCA TGGTAGTTTGGAGAAGCTGGAGGCTGTTGAAGAAGGACAAACAAGCATAG AAGGTTCAAGCTATGGCAACAAGTTGATTGAAGCAAGTGGGAGACTCACC AATATTGATTTGCAAAGAGAAGATGAATGTGGAATTTGCTTAGAGCCTTG CACCAAAATGGTTTTACCTGGTTGCTGCCATGCCATGTGTATCAAATGCT ACCGCAAGTGGAACAGAAAGTCAGAGTCTTGTCCTTTTTGTCGTGGGAGC TTGAGGAGAGTTAATTCAGAGGATCTTTGGGTACTAACTTGTGATGATGA TGTTGTTGATGCTGAAACAGTTTCTAAAGAGGACTTGTTGCGTTTTTACC TCTATATCAGCAAGCTGCCAAAAGATCACCCAGAAGCACTTTTCCTAATG TATTATGAATACCTCATCTAA back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
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