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Transcript Overview
| Name | Phvul.002G009400.2 |
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| Unique Name | Phvul.002G009400.2_Pv_G19833_v2.1 |
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| Type | mRNA |
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| Organism | Phaseolus vulgaris (Common bean) |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
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| Phvul.002G009400.2.v2.1.CDS.2 | Phvul.002G009400.2.v2.1.CDS.2_Pv_G19833_v2.1 | Phaseolus vulgaris | CDS |
| Phvul.002G009400.2.v2.1.CDS.1 | Phvul.002G009400.2.v2.1.CDS.1_Pv_G19833_v2.1 | Phaseolus vulgaris | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Phvul.002G009400.2.v2.1.three_prime_UTR.1 | Phvul.002G009400.2.v2.1.three_prime_UTR.1_Pv_G19833_v2.1 | Phaseolus vulgaris | three_prime_UTR |
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
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| Phvul.002G009400.2.v2.1.five_prime_UTR.1 | Phvul.002G009400.2.v2.1.five_prime_UTR.1_Pv_G19833_v2.1 | Phaseolus vulgaris | five_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Phvul.002G009400.2 | Phvul.002G009400.2_Pv_G19833_v2.1-protein | Phaseolus vulgaris | polypeptide |
| Phvul.002G009400.2_Pv_G19833_v2.1 | Phvul.002G009400.2_Pv_G19833_v2.1 | Phaseolus vulgaris | polypeptide |
Homology
BLAST of Phvul.002G009400.2 vs. DB:Swiss
Match: P2A10_ARATH (Protein PHLOEM PROTEIN 2-LIKE A10 OS=Arabidopsis thaliana OX=3702 GN=PP2A10 PE=2 SV=1) HSP 1 Score: 280.026 bits (715), Expect = 2.186e-90 Identity = 162/336 (48.21%), Postives = 222/336 (66.07%), Query Frame = 1
Query: 46 RKRKKWVFILCAVGFGGFSAYKLYHAPXXXXXXXXXXXLVGALVSVAEAVSESADTIGIVSRDVKDFLQSDSDQIPNSLKQISKIARSQHLSESLXXXXXXXXXXXXRGYQSMNRTGG----EQTGSTAVDRVLDKMFTPAGSGFASVVLGSFARNLVLAFYSDQRNHLXXXXXXXXXXXXVTHVGSSSDAVLAWVDVVCGDRCGKLIGNCVQLFVSTAVAVYLDKTMHINTYDDFFAGLANPKHETNVREILVSVCNGAVETLIKTSHKVLTSSNNDVGSGSCSYLAIGETLINEDLGGEMSSIESKVDDVYDEENKSGWVGKISSTLAVPSNRR 1041
++R+KW+ + G G+ AYK+YH PSV RKRKR+ KL GA+VSVAE +S+SA+T+ +VSRDVKDFL SDSD+IPNSLKQI+KI S ++SL V+ AVT+G RGY+S + G + + S+ VDRV+DK+F+ AG+GF SVV+GSFA+NLVL FYS + GV GS S WV ++ D+C +L+ +C++ F STA+ VYLDKTM INTYD F GL NPKH+ +V+++LVSVCNGA+ET+++TSH V TSS + + E + ++D S+ V + D +GW I++TLAVPSNRR
Sbjct: 15 QRRRKWLIFMAISGVSGYGAYKVYHLPSVARKRKRLFKLFGAIVSVAELISDSAETLSMVSRDVKDFLNSDSDEIPNSLKQIAKITTSNEFTDSLSRVSQAVTIGAFRGYKSESSIGDSGIEKSSDSSVVDRVIDKVFSEAGTGFVSVVVGSFAKNLVLGFYSGK------------VESGVKCEGSDSSETPRWVTLLGDDKCRELLADCIERFTSTAIGVYLDKTMDINTYDQIFEGLTNPKHQDSVKDVLVSVCNGALETIVRTSHDVFTSSRSK---------NVIEEIEDDDFKSNGSARSKMVSESGDGVKSNGWTEAIATTLAVPSNRR 329
The following BLAST results are available for this feature:
Sequences
The
following sequences are available for this feature:
protein sequence of Phvul.002G009400.2_Pv_G19833_v2.1 >Phvul.002G009400.2_Pv_G19833_v2.1 ID=Phvul.002G009400.2_Pv_G19833_v2.1; Name=Phvul.002G009400.2_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=353bp
MEVQLVGEGFGFDYFRKRKKWVFILCAVGFGGFSAYKLYHAPSVVRKRKR
VSKLVGALVSVAEAVSESADTIGIVSRDVKDFLQSDSDQIPNSLKQISKI
ARSQHLSESLVSVTNAVTVGVVRGYQSMNRTGGEQTGSTAVDRVLDKMFT
PAGSGFASVVLGSFARNLVLAFYSDQRNHLGGESNSSNETGGVTHVGSSS
DAVLAWVDVVCGDRCGKLIGNCVQLFVSTAVAVYLDKTMHINTYDDFFAG
LANPKHETNVREILVSVCNGAVETLIKTSHKVLTSSNNDVGSGSCSYLAI
GETLINEDLGGEMSSIESKVDDVYDEENKSGWVGKISSTLAVPSNRRHFV
LL* back to topmRNA from alignment at Chr02:1058914..1060832- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Phvul.002G009400.2_Pv_G19833_v2.1 ID=Phvul.002G009400.2_Pv_G19833_v2.1; Name=Phvul.002G009400.2; organism=Phaseolus vulgaris; type=mRNA; length=1919bp; location=Sequence derived from: Chr02:1058914..1060832- (Phaseolus vulgaris
CAAAGACCAGCCCATAAGAGAATATATCTCCAACAAAAAAAAAATGGGAA
TATTTAGTGGTGGTTGTGATTTGTATGTGGCGTGACGGCTGAATTGAAGA
TGACGGTTGGGGCTATTGCTTCCACCAAAAACAACCAATACCAAACAGCT
CCAACTCCAGCGCAAACCCTCGATTTTTGACCTCACAACCTTCTTCAAGG
TCTGTCTCTCTTTTTTTCTCTATCTATTTAACATCCTTTGGTTTGTGTGA
GCAACGATCGTAATAATAAATTGGCGAGTTTAAATATCCGTAAGTGGGGT
TAATGGAAGTGCAGTTAGTTGGTGAGGGTTTTGGTTTTGATTACTTCCGT
AAAAGAAAGAAATGGGTCTTCATTTTGTGTGCTGTTGGGTTCGGTGGGTT
CAGCGCTTACAAGCTCTATCATGCGCCTTCTGTGGTTCGTAAGAGAAAGA
GGGTCTCGAAGCTTGTGGGTGCATTGGTTTCCGTGGCGGAAGCCGTATCC
GAATCTGCAGATACCATCGGAATCGTATCCAGAGACGTCAAGGACTTTCT
GCAGTCCGATTCAGATCAAATCCCCAATAGCTTGAAGCAAATTTCCAAGA
TTGCTCGCTCTCAACACTTGTCGGAGTCCTTGGTTAGCGTCACCAATGCT
GTCACCGTGGGAGTCGTGCGCGGTTATCAATCTATGAACCGGACTGGTGG
TGAGCAAACCGGTTCAACCGCCGTGGACCGGGTGCTTGACAAAATGTTTA
CACCAGCTGGGTCAGGTTTTGCTTCTGTAGTTCTTGGAAGCTTTGCTAGG
AACCTGGTTCTTGCGTTTTATTCTGATCAGCGTAACCACTTAGGTGGAGA
ATCGAACTCGAGCAATGAGACTGGTGGTGTCACACATGTTGGATCCAGTT
CGGATGCTGTTCTTGCTTGGGTGGATGTAGTTTGTGGTGATAGGTGTGGG
AAACTGATTGGGAATTGTGTGCAATTGTTTGTGAGCACCGCGGTTGCGGT
TTATCTTGACAAGACCATGCATATCAACACCTATGACGATTTCTTTGCTG
GCTTAGCTAACCCGAAGCATGAGACCAATGTGAGGGAAATCTTGGTTTCT
GTTTGTAATGGTGCCGTGGAGACTCTCATCAAGACGTCTCATAAAGTGTT
GACAAGTTCAAATAATGATGTTGGTTCCGGTTCGTGTTCATATTTGGCTA
TTGGAGAAACTCTGATAAATGAGGACTTGGGTGGAGAAATGTCGTCGATT
GAATCGAAGGTTGATGATGTTTATGATGAAGAAAATAAGAGTGGATGGGT
GGGCAAAATTTCGTCAACGTTGGCGGTTCCCAGTAATAGGAGGTTTGTTC
TTGACCTGACTGGAAGGGTGACATTTGAGACTGTTAGATCTTTCATGGAG
TTTGTTTTGCAGACATTTTGTGCTTCTGTGAGGAGATGTGCTCATATTGT
TCAAGAGGCAGTGCTTGAGATTGTGAGATATGTTGCAGCGAAGTCCTCCG
TTATTGTGACTATATGTCTCGCCTTGTGTCTTCACATAATGGGTGGAGGC
TGGGCTTTGGTGCCTGCTTAAGTAATTGTTGTGACTACTTTTCATTCCTC
AAGATTTGATTGCTAATTAAACTAGAAAAAATTTCTGGAGATGCTGCTTC
CTTGGGTATACATGGATTAGTTTTGTAAATCTTAATATTATAGATGTACA
GTGACCATAGAAGGTATGTTTTCTTACATTGTAAACTAATGGGCCAACTC
CACAGCTCTCATAGAATCCCCAGCATTCATCAACCAGCAATACTATTTGT
TTAGGGTGTATCAATCATGATTAGACCTATTCTTGAATTGGAATCTTGTT
GTAAATATATCCTTGTGCATACTTTGGTGATATGATATTTTCTATTAACC
AGGGTGCATTCTCTCTGGT back to topCoding sequence (CDS) from alignment at Chr02:1058914..1060832- >Phvul.002G009400.2_Pv_G19833_v2.1 ID=Phvul.002G009400.2_Pv_G19833_v2.1; Name=Phvul.002G009400.2; organism=Phaseolus vulgaris; type=CDS; length=1059bp; location=Sequence derived from: Chr02:1058914..1060832- (Phaseolus vulgaris
ATGGAAGTGCAGTTAGTTGGTGAGGGTTTTGGTTTTGATTACTTCCGTAA
AAGAAAGAAATGGGTCTTCATTTTGTGTGCTGTTGGGTTCGGTGGGTTCA
GCGCTTACAAGCTCTATCATGCGCCTTCTGTGGTTCGTAAGAGAAAGAGG
GTCTCGAAGCTTGTGGGTGCATTGGTTTCCGTGGCGGAAGCCGTATCCGA
ATCTGCAGATACCATCGGAATCGTATCCAGAGACGTCAAGGACTTTCTGC
AGTCCGATTCAGATCAAATCCCCAATAGCTTGAAGCAAATTTCCAAGATT
GCTCGCTCTCAACACTTGTCGGAGTCCTTGGTTAGCGTCACCAATGCTGT
CACCGTGGGAGTCGTGCGCGGTTATCAATCTATGAACCGGACTGGTGGTG
AGCAAACCGGTTCAACCGCCGTGGACCGGGTGCTTGACAAAATGTTTACA
CCAGCTGGGTCAGGTTTTGCTTCTGTAGTTCTTGGAAGCTTTGCTAGGAA
CCTGGTTCTTGCGTTTTATTCTGATCAGCGTAACCACTTAGGTGGAGAAT
CGAACTCGAGCAATGAGACTGGTGGTGTCACACATGTTGGATCCAGTTCG
GATGCTGTTCTTGCTTGGGTGGATGTAGTTTGTGGTGATAGGTGTGGGAA
ACTGATTGGGAATTGTGTGCAATTGTTTGTGAGCACCGCGGTTGCGGTTT
ATCTTGACAAGACCATGCATATCAACACCTATGACGATTTCTTTGCTGGC
TTAGCTAACCCGAAGCATGAGACCAATGTGAGGGAAATCTTGGTTTCTGT
TTGTAATGGTGCCGTGGAGACTCTCATCAAGACGTCTCATAAAGTGTTGA
CAAGTTCAAATAATGATGTTGGTTCCGGTTCGTGTTCATATTTGGCTATT
GGAGAAACTCTGATAAATGAGGACTTGGGTGGAGAAATGTCGTCGATTGA
ATCGAAGGTTGATGATGTTTATGATGAAGAAAATAAGAGTGGATGGGTGG
GCAAAATTTCGTCAACGTTGGCGGTTCCCAGTAATAGGAGACATTTTGTG
CTTCTGTGA back to top
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