Phvul.002G034300.1

Transcript Overview
NamePhvul.002G034300.1
Unique NamePhvul.002G034300.1_Pv_G19833_v2.1
TypemRNA
OrganismPhaseolus vulgaris (Common bean)
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr02supercontigChr02:3422964..3428622 -Phaseolus vulgaris G19833 genome v2.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Phaseolus vulgaris G19833 genome v2.12019-09-17
InterProScan: Phaseolus vulgaris G19833 genome v2.12019-10-18
BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot2019-10-18
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
pspvL110Pisum sativum Cameor genome v1aPisum sativum
pvvuR210Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caipvL0569Cicer arietinum ICC 4958 genome v2Cicer arietinum
crpvL924Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
capvL780Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccpvL0989Cajanus cajan Asha genome v1.0Cajanus cajan
anpvL0524Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0580Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL1104Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
pvzwsR196Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvvfhR222Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvtifR218Vicia faba cv. Tiffany genome v1.0Vicia faba
pvvrvR197Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvuaR185Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvssR347Vicia sativa cv. Studenica genome v1.0Vicia sativa
canpvL751Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjpvL718Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carpvL774Cicer arietinum
ccapvL578Cajanus cajan cv. Asha genome v2.0Cajanus cajan
pvvumR271Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvvaR253Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvasR266Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvstR260Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvpvfR197Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvvunR192Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
Vigst.10G160400.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Va06G002640.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vigun02g184500.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Ca_15049Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
XM_058922370.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
rna-XM_022775761.1Vigna radiata cv. VC1973A genome v6.0Vigna radiata
rna-XM_004511444.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Psat2g186160.1Pisum sativum Cameor genome v1aPisum sativum
Psat02G0545900-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
jg4089.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Cc_v2.0_14664.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Vum_10G01741.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Vfaba.Hedin2.R1.1g390080.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
rna-TanjilR_22153Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vigun02g184500.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
rna-KK1_025386Cajanus cajan Asha genome v1.0Cajanus cajan
Vfaba.Tiffany.R1.1g319160.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Vigan.10G228200.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Cr_21190.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
evm.model.Chr02.1767.4.62113175Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Ca_13331.1Cicer arietinum ICC 4958 genome v2Cicer arietinum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
PvulFLAVERTChr02.1000186Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Phvul.002G034300Phvul.002G034300_Pv_G19833_v2.1Phaseolus vulgarisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Phvul.002G034300.1Phvul.002G034300.1_Pv_G19833_v2.1-proteinPhaseolus vulgarispolypeptide
Phvul.002G034300.1_Pv_G19833_v2.1Phvul.002G034300.1_Pv_G19833_v2.1Phaseolus vulgarispolypeptide


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.002G034300.1.v2.1.three_prime_UTR.3Phvul.002G034300.1.v2.1.three_prime_UTR.3_Pv_G19833_v2.1Phaseolus vulgaristhree_prime_UTR
Phvul.002G034300.1.v2.1.three_prime_UTR.2Phvul.002G034300.1.v2.1.three_prime_UTR.2_Pv_G19833_v2.1Phaseolus vulgaristhree_prime_UTR
Phvul.002G034300.1.v2.1.three_prime_UTR.1Phvul.002G034300.1.v2.1.three_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgaristhree_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.002G034300.1.v2.1.CDS.7Phvul.002G034300.1.v2.1.CDS.7_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.002G034300.1.v2.1.CDS.6Phvul.002G034300.1.v2.1.CDS.6_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.002G034300.1.v2.1.CDS.5Phvul.002G034300.1.v2.1.CDS.5_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.002G034300.1.v2.1.CDS.4Phvul.002G034300.1.v2.1.CDS.4_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.002G034300.1.v2.1.CDS.3Phvul.002G034300.1.v2.1.CDS.3_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.002G034300.1.v2.1.CDS.2Phvul.002G034300.1.v2.1.CDS.2_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.002G034300.1.v2.1.CDS.1Phvul.002G034300.1.v2.1.CDS.1_Pv_G19833_v2.1Phaseolus vulgarisCDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.002G034300.1.v2.1.five_prime_UTR.1Phvul.002G034300.1.v2.1.five_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgarisfive_prime_UTR


Homology
BLAST of Phvul.002G034300.1 vs. DB:Swiss
Match: C3H55_ARATH (Zinc finger CCCH domain-containing protein 55 OS=Arabidopsis thaliana OX=3702 GN=At5g12440 PE=2 SV=3)

HSP 1 Score: 388.652 bits (997), Expect = 7.701e-125
Identity = 269/645 (41.71%), Postives = 371/645 (57.52%), Query Frame = 1
Query:  175 MGSCEATNVVLSKIKNFDPENASKIMGYLLM-NLEDSELIRVACSPDHVLHSLILRVKSHMGXXXXXXXXXXXXXXXXXXIARITGSSTNPFSR-------AGPTNGF-DFARNPSSPSAHSHAWNFPNNNP--------ISPKSTPL---LSYDNIRALSPRVNGECD------FVDEQQVNEYFPFLNDS-SKNEDLVDPRLELGVGAQNWHSGDSHLHRRSYSASDVGFGCEEAAPGLGYKPCLYFARGFCKNGTNCKFLHAAFSDSLDA---TVGSPSKLEGMEQHREDFVRFKVP-QLQRLGSGSSATA----REKYYEFLMQE-SQRAAAAFMMGEEFGSFGWDRPERNDFLAPISGDKPNSASRQIYLTFPAESTFKDEDVSEYFSKFGPVQDVRIPYQQKRMFGFVTFVYPETVRLILSKGNPHFICDSRVLVKPYKEKGKVPDKR--QHPQQQLERGDLSPCLSPSGFGSKEPYDFHLGSRMLYNPHDILLRRRMEEQAEWQQVLELQERGLKNLQLPDFKNNPIHHHQRSLSVGNPLVLPHQLHGHINDAGLSPNSIKGDIAGYGGTFTSTNSLGIASEQQQSQKEVELDDSESGNIKDGGNTKNL---DLSSSVEQALPDSLFASPTKAAGDYH 1986
            M S +AT+++L+KI++ +P+ A KI+GYLL+ +  D +L+ +A  P+ +L S I +VKS +G+  +   S              + S  NP  R       +  +NGF DF RN  S  + +  W+F N           ISPK TP+    S      LS   +G  D       +D+QQ+N+   FL+DS SK EDLVDP + L         G++HLHRRS+S  D  F   +   G G KPC+YF+RG CKNG +CKF+H  + D++D       SP K+E   +  E+ +R K+  Q QRL S     A     EK  +FL+Q+ +QR        E F S    R ER + LA   GD+ NSASRQIYLTFPA+STFKDEDV+ YFS FG VQDVRIPYQQKRMFGFV+F +PETV+++L++GNPHFICDSRVLVKPYKEKGKV DK+  Q  QQQ+ERG+ SPC SPSG   +E  DFHLGS+MLY   +++  RR  EQA+  + +EL+ R   NLQLP+FKN+   +H RS SVG+P        G+ + AG      + ++ G      + ++L +          + +++S S   K+  N   L   D  S++E  LP +LF  P+ ++ D H
Sbjct:    1 MDSGDATSLLLTKIRSLEPDYAPKIIGYLLLHDFGDRDLMHLARGPESILQSTISKVKSLLGIFSNNSPSS----------TPTSPSPLNPICRPPLNGRGSSHSNGFMDFRRNSPSSPSSTSPWSFNNCINGNNGNNPHISPKHTPISKPFSSHQSNGLSATHSGSADAAGGADLLDDQQLNDCLSFLDDSCSKTEDLVDPSIPLDYSVDG--DGETHLHRRSFSC-DASFVSGDDGFGGGCKPCVYFSRGLCKNGESCKFIHGGYPDNMDGNGIVADSPRKMENFVRQHEEMMRLKLAYQQQRLASQILGRAPQLPYEKRMDFLLQQHAQRDGGLPFGDERFWSSSPGRLERME-LAMHLGDQSNSASRQIYLTFPADSTFKDEDVATYFSLFGTVQDVRIPYQQKRMFGFVSFAHPETVKVVLARGNPHFICDSRVLVKPYKEKGKVLDKKQQQLLQQQIERGNYSPCSSPSGIDPREQSDFHLGSKMLYERREMM--RRKIEQADLLRAIELERRRFINLQLPEFKNSVTLNHHRSFSVGSP--------GYFSSAGNQSPDFQSELNGADALKVTDDTLEL--HPYPVVNPMSVNNSYSNGAKEETNKSELLDPDSGSTIELVLPSNLF--PSASSTDDH 617          
BLAST of Phvul.002G034300.1 vs. DB:Swiss
Match: C3H53_ORYSJ (Zinc finger CCCH domain-containing protein 53 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0682400 PE=2 SV=1)

HSP 1 Score: 314.309 bits (804), Expect = 5.062e-96
Identity = 250/652 (38.34%), Postives = 347/652 (53.22%), Query Frame = 1
Query:  175 MGSCEATNVVLSKIKNFDPENASKIMGYLLM-NLEDSELIRVACSPDHVLHSLILRVKSHMGXXXXXXXXXXXXXXXXXXIARITGSSTNPF----SRAGPTNGFDFARNPSSPSAHSHAWNFPNNNPISPKSTPLLSYDNIRALSPRVNGECD--------FVDEQQVNEYFPFLNDSSKNEDLVDPRLELGVGAQNWHSGDSHL-------------HRRSYSASDVGFGCEEAAPGLGYKPCLYFARGFCKNGTNCKFLHAAFSDSLDATVGSPSKLEGMEQHREDFVRFKVPQLQRL-----------GSGSSAT---AREKYYEFLMQESQRAAAA---FMMGEEFGSF-GWDRPERNDFLAPISGDKPNSASRQIYLTFPAESTFKDEDVSEYFSKFGPVQDVRIPYQQKRMFGFVTFVYPETVRLILSKGNPHFICDSRVLVKPYKEKGKVPDKRQHPQQQLERGDLSPCLSPSGFGSKEPYDFH-LGSRMLY---NPHDILLRRR---MEEQAEWQQVLELQERGLKNLQLPDFKNNPIHHHQRSLSVGNPLVLPHQLHGHINDAGLSPNSIKGDIAGYGGTFTSTNSLGIASEQQQSQKEVELDDSESGNIKDGGNTKNLDLSSSVEQALPDSLFASPTKAAG 1977
            M + EAT VV S+I+  DP++A+KIMG+LL+ +  + E+IR+A  P+ +LH+++ + +  +GL  ++             +A    ++ +PF      +G         + SSPS+ +    F  NN IS  +   +       +SP   G            +DE Q+ +   FLN+         P  + G   ++   GD  L             HRRS S S++   C   A GLG+KPCLY+ARG+CKNG+ C+F+H    D     +  PS +E  +Q ++  +R K  +L              GS S+AT   +     +    ESQRAAAA    + G+E   F G  R ER DF + +     N  SRQIYLTFPA+STF++EDVS YFS +GPV DVRIPYQQKRMFGFVTFVYPETV+LIL+KGNPHFICD+RVLVKPYKEKGKVPDK +   Q  ER D S C +P+G  +++P+D H LG+RML    + +++LLRR+    ++ AE QQ +EL  R L  LQL DFK+           +GNP           N  G SP    G++ G G  F       +A ++  +  + E    ES       ++ N D   SVE  LPDS FASPTK+AG
Sbjct:    1 MDAYEATKVVFSRIQALDPDHAAKIMGFLLIQDHGEKEMIRLAFGPEALLHTVMAKARKELGLLPASGPGTPTS------VAAAAAAAHSPFMLSRQNSGRCGTAPSPLSVSSPSSWAPPPVFSRNNSISNGAGEEMVGLGDELISPANGGGPPSPFFGGDPLMDELQLQDQLAFLNEGGVPAGHQMPMFDGGE-CRSPGGGDGGLFSYNLGWANGGPGHRRSASVSEL---CLGGADGLGWKPCLYYARGYCKNGSACRFVHGGLPDDAAGKM-DPSAVE--QQCQDFLIRSKSQRLAAAAFPYSPTGSLPGSPSAATKCLSLLLQQQQQQNESQRAAAAAALMLGGDEAHKFMGRPRLERADFASMM-----NPGSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPDKYRKQHQPGERVDFSSCTTPTGLDARDPFDMHQLGARMLQHSNSANEMLLRRKLEEQQQAAELQQAIELHSRRLMGLQLLDFKSRAA---AAPTPIGNPFSASQTA---ANATGESPPD-SGEL-GKGSGFL------LAHKKAVNGADKEESTGES-------SSPNTDSDQSVEHNLPDSPFASPTKSAG 613          
BLAST of Phvul.002G034300.1 vs. DB:Swiss
Match: C3H46_ARATH (Zinc finger CCCH domain-containing protein 46 OS=Arabidopsis thaliana OX=3702 GN=At3g51950 PE=1 SV=1)

HSP 1 Score: 301.212 bits (770), Expect = 1.492e-92
Identity = 232/605 (38.35%), Postives = 305/605 (50.41%), Query Frame = 1
Query:  175 MGSCEATNVVLSKIKNFDPENASKIMGYLLM-NLEDSELIRVACSPDHVLHSLILRVKSHMGXXXXXXXXXXXXXXXXXXIARITGSSTNPFSRAGPTNGFDFARNPSSPSAHSHAWNFPNNN---PISPKSTPLLSYDNIRALSPRVNGECDFVDEQQVNEYFPFLNDSSKNEDLVDPRLELGVGAQNWHSGDSHLHRRSYSA-SDVGFGCEEAAPGLGYKPCLYFARGFCKNGTNCKFLHAAFSDSLDATVGSPSKLEGMEQHREDFVRFKVPQLQR--LGSGSSATAREKYYEFLMQESQRAAAAFMMGEEFGSFGWDRPERNDFLAPISGDKPNSASRQIYLTFPAESTFKDEDVSEYFSKFGPVQDVRIPYQQKRMFGFVTFVYPETVRLILSKGNPHFICDSRVLVKPYKEKGKVPDKRQHPQQQLERGDLSPCLSPSGFGSKEPYDFHLGSRMLY-NPHDILLRRRMEEQAEWQQVLELQERGLKNLQLPDFKNNPIHHHQRSLSVGNPLVLPHQLHGHINDAGLSPNSIKGDIAGYGGTFTSTNSLGIASEQQQSQKEVELDDSESGNIKDGGNTKNLDLSSSVEQALPDSLFASPT 1965
            M   EAT +VLS+I++ DPENASKIMG LL+ +  + E+IR+A  P+ ++HS+I++ K  +G                     +   S +P+S                   H      P NN    ++P S P   Y N    S  +  + + +D+            +S++ D +        G+ +  SG   L    Y   SD+GFG           PC YFARGFCKNG +C+F+H   SD     VGSPS++E +   R + V    P+L    +   S  +   K       + QRAAAA M+G+E    G  RPER D  A         ASRQIYLTFPA+S F++EDVS YFS FGPVQDVRIPYQQKRMFGFVTFVYPETV+ IL+KGNPHF+CDSRVLVKPYKEKGKVPDK +   Q  ER      LSP+G  S  P D  LG R  Y N  D+L R + EE     ++LELQ R L NLQL D K     H Q        L  P  +H        SPN        +  +  S   L +       ++E +  +   G+ K+G +   ++L   +E +LPDS FASP 
Sbjct:    1 MDGYEATRIVLSRIQSLDPENASKIMGLLLLQDHGEKEMIRLAFGPETLVHSVIVKAKKELG---------------------LMNCSRSPWS-------------------HQDELISPKNNRGSSLNPASLPF--YANGGRSSRDLTNDFELMDDM-----------NSRSTDFL--------GSVHARSGSCVLDGLGYGGDSDLGFGG---------VPCSYFARGFCKNGASCRFVH---SDGGADLVGSPSRIELL---RSNSV---PPRLAHHFMTRSSLPSFSTKGVNLQQNDVQRAAAALMIGDELQKLGRWRPERIDLSAMAC-----PASRQIYLTFPADSRFREEDVSNYFSTFGPVQDVRIPYQQKRMFGFVTFVYPETVKSILAKGNPHFVCDSRVLVKPYKEKGKVPDKYRT-NQTTERE-----LSPTGLDS-SPRDV-LGGRGFYNNTQDVLWRSKFEE-----EILELQSRRLMNLQLLDVKK----HFQ--------LNSPTNIH--------SPNP-------FSQSLISPRPLSVI------KREYDGGEKGKGSSKEGSDDDTMNLPERLEDSLPDSPFASPA 475          
BLAST of Phvul.002G034300.1 vs. DB:Swiss
Match: C3H23_ORYSJ (Zinc finger CCCH domain-containing protein 23 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0329200 PE=2 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 2.759e-87
Identity = 242/673 (35.96%), Postives = 347/673 (51.56%), Query Frame = 1
Query:  175 MGSCEATNVVLSKIKNFDPENASKIMGYLLM-NLEDSELIRVACSPDHVLHSLILRVKSHMGXXXXXXXXXXXXXXXXXXIARITGSSTNPFSRAGPTNGFDFARNPS-SPSAHSHAWNFPNNNPISPKS-------------TPLLSYDNIRALSPRV--NGECDFVDEQQVNEYFPFLNDSSKNEDLVDP--RLELGVGAQ-----------------NWHSGDSHLHRRSYSASDVGFGCEEAAPGLGYKPCLYFARGFCKNGTNCKFLHAAFSD--SLDATVGSPSKLEGMEQHREDFVRFKVPQLQRLGSGS-------------SATAR----EKYYEFLMQESQRAAAAFMM---GEEFGSF-GWDRPERNDFLAPISGDKPNSASRQIYLTFPAESTFKDEDVSEYFSKFGPVQDVRIPYQQKRMFGFVTFVYPETVRLILSKGNPHFICDSRVLVKPYKEKGKVPDKRQHPQQQLERGDLSPCLSPSGFGSKEPYDFH-LGSRMLY---NPHDILLRRR---MEEQAEWQQVLELQERGLKNLQLPDFKNNPIHHHQRSLSVGNPLVLPHQLHGHINDAGLSPNSIKGDIAGYGGTFTSTNSLGIASEQQQSQKEVELDDSESGNIKDGGN--------TKNLDLSSSVEQALPDSLFASPTKA 1971
            M + EAT VV S+I+  DP++A+KIMG LL+ +  D E+IR+A  P+ +LHS++ + +  + L     ++ S         +    ++ +PF  +   +G    R P+ SPS+ + A  F  +N +                 +PL       A +P     G    +D+ ++ E   FL+D +     V+P   L+   GA+                  W +G    HRRS S +++  G +    G G+KPCLY+ARGFCKNG+ C+F+H   SD  ++DAT          +Q  +DF+     + QRLG  +             SAT++        +    ++QRAAAA +M   G+E   F G  R +R DF + +     N  SRQIYLTFPA+STF++EDVS YFS +GPV DVRIPYQQKRMFGFVTFVYPETV+LIL+KGNPHFICD+RVLVKPYKEKGKVPDK +  QQ    GD   C+SP+G  +++P+DFH LG+RML    + ++++LRR+    ++ AE QQ ++L  R L  LQL D K++   H   + ++  P  + +                    +G  G  T   S          Q          G + +GGN        T+N D   S E  LPDS FAS TK+
Sbjct:    1 MDAYEATKVVFSRIQALDPDHAAKIMGLLLIQDHGDKEMIRLAFGPEALLHSVMAQARKELALLPPPQAASS---------SPTVPAAHSPFLLSRQNSG----RCPAPSPSSWAQAQPFSRSNSMGNGGAADEMVGAGEELMSPLNGGGGAAANAPPFFPRGGDALLDDFELQEQLAFLHDGAGG---VNPGHALQAFDGAECRSPGPGESGGMLPYGLAWANGGPG-HRRSASVNELCLGGD----GFGWKPCLYYARGFCKNGSTCRFVHGGLSDDAAMDATTAE-------QQQCQDFLLRS--KSQRLGPAAFPFTPTGSLPASPSATSKCLSLLLQQQQQHNDNQRAAAAALMLAGGDEAHKFMGRPRLDRVDFASMM-----NPGSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPDKYRKQQQ----GDFC-CMSPTGLDARDPFDFHQLGARMLQHSNSANELMLRRKLEEQQQAAELQQAIDLHSRRLIGLQLLDLKSSAAVHAAETTTMSLPTPITNAF-----------------TSGQPGATTIVES----PPSSTGQLMASCGSPSEGKVVNGGNKADSAGEVTRNADSDQSGEHNLPDSPFASSTKS 612          
BLAST of Phvul.002G034300.1 vs. DB:Swiss
Match: C3H22_ORYSJ (Zinc finger CCCH domain-containing protein 22 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0328900 PE=2 SV=2)

HSP 1 Score: 268.47 bits (685), Expect = 9.994e-79
Identity = 209/533 (39.21%), Postives = 285/533 (53.47%), Query Frame = 1
Query:  544 ISPKSTPLLSYDNIRALSPRVNGECDFVDEQQVNEYFPFLNDSSKNE-------DLVDPR----------LELGVGAQNWHSGDSHLHRRSYSASDVGFGCEEAAPGLGYKPCLYFARGFCKNGTNCKFLHAAFSDSLDATVGSPSKLEGMEQHREDFV-RFKVPQLQRLG--------SGS---SATAREKYYEFLMQE----SQRAAAA--FMMG---EEFGSFGWDRPERNDFLAPISGDKPNSASRQIYLTFPAESTFKDEDVSEYFSKFGPVQDVRIPYQQKRMFGFVTFVYPETVRLILSKGNPHFICDSRVLVKPYKEKGKVPDK-RQHPQQQLERGDLSPCLSPSGFGSKEPYDFH-LGSRMLY---NPHDILLRRR---MEEQAEWQQVLELQERGLKNLQLPDFKNNPIHHHQRSLSVGNPLVLPHQLHGHINDAGLSPNSIKGDIAGYGGTFTSTNSL-GIASEQQQSQKEVELDDSESGNIKDGGNTKNLDLSSSVEQALPDSLFASPTKAAGDYHADFST 2001
            ISP ++   +  N     PR  G    +D+ Q+ E   FLN+   N        D  + R             G+G  N   G    HRRS S +++  G   ++ G G+KPCLY+ARGFCKNG++C+F+H   + +L       +  E  +Q  +DF+ R K    QRLG        +GS   S +A  K    L+Q+    +QRAAAA   M+G   E     G  R +R DF + +     N  SRQIYLTFPA+STF++EDVS YFS +GPV DVRIPYQQKRMFGFVTFVYPETV+LIL+KGNPHFICD+RVLVKPYKEKGKVPDK R+H      +GD S C +P+G   ++P+D H LG+RML    + ++++LRR+    ++ AE QQ +EL  R L +LQL D KN        ++++  P          +    +      G+     G FT    +     ++++S  E  L               N D   S+E  LPDS FASPTK++   H  F+T
Sbjct:  134 ISPANSGGGAAANAPPFFPR--GGDVLLDDFQLQEQLAFLNEGGVNPSHPLQGFDGAECRSPGPGEGGGMFPYGLGWANGGPG----HRRSASVNELCLG-GGSSDGFGWKPCLYYARGFCKNGSSCRFVHGDDAAALTGAAMDAATAE--QQQCQDFLLRSKS---QRLGPAAFPYSPTGSLPGSPSAATKCLSLLLQQQHNDNQRAAAAAALMLGGSDEAHKFMGRPRLDRVDFASMM-----NPGSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPDKYRKH------QGDFSGCTTPTGLDGRDPFDLHQLGARMLQHSNSTNEMMLRRKLEEQQQAAELQQAIELHSRRLMDLQLLDLKNRAAAAVTTAMAMTIPTANAFGSSQPLATTMVESPPDSGEQLKGTGYFTEERKMVNGGGDKEESAGEASL---------------NADSDQSLEHNLPDSPFASPTKSSVSAHQSFTT 628          
BLAST of Phvul.002G034300.1 vs. DB:Swiss
Match: C3H18_ARATH (Zinc finger CCCH domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=At2g05160 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.535e-37
Identity = 96/254 (37.80%), Postives = 129/254 (50.79%), Query Frame = 1
Query:  802 AAPGLGYKPCLYFARGFCKNGTNCKFLHA-------AFSDSLDAT--------VGSPSKLEGMEQHREDFVRFKVPQLQRLGSGSSATAREKYYEFL---------MQESQRAAAA--------------------------FMMGEEFGSFGWDRPERNDFLAPISGDKPNSASRQIYLTFPAESTFKDEDVSEYFSKFGPVQDVRIPYQQKRMFGFVTFVYPETVRLILSKGNPHFICDSRVLVKPYKEKGK 1413
            + P    K C YF +GFCK+G NC++ H        +F+   +          V SP  LE +E    + ++     L+R    S A+    YYE           + ESQR   A                           ++ E+   F     ERN+  A ++G      SRQIYLTFPAES+F + DVS YF+ +G V+DVRIP QQKRM+GFVTF   ETV+ IL+KGNPHFIC++RVLVKPY+EK +
Sbjct:  153 SLPEFPVKICHYFNKGFCKHGNNCRYFHGQIIPERESFAQMFNPNNNLSDEEHVVSPVSLEKLEGEIIELLK-----LRRGAPISIASLPMMYYEKYGRTLQAEGYLTESQRHGKAGYSLTKLLARLKNTIRLVDRPHGQHSVILAEDASKFVEYTGERNEHGAILAG------SRQIYLTFPAESSFTEHDVSIYFTSYGHVEDVRIPCQQKRMYGFVTFASSETVKHILAKGNPHFICNARVLVKPYREKSR 395          
BLAST of Phvul.002G034300.1 vs. DB:Swiss
Match: C3H54_ORYSJ (Zinc finger CCCH domain-containing protein 54 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0126700 PE=2 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 3.950e-34
Identity = 93/243 (38.27%), Postives = 125/243 (51.44%), Query Frame = 1
Query:  823 KPCLYFARGFCKNGTNCKFLH-AAFSDSLDATV------------GSPSKLEGMEQHREDFVRFKVPQLQRLGSGSSATAREKYYEFL-----MQESQR-AAAAFMM-----------------GEEFGSFGWDRPERNDFLAPI------SGDKPNSASRQIYLTFPAESTFKDEDVSEYFSKFGPVQDVRIPYQQKRMFGFVTFVYPETVRLILSKGNPHFICDSRVLVKPYKEKGKVPDK 1425
            +PC YF++G CKNG NC + H   + D+L                 +P  LE +E    + +  +  Q   + S  +    EKY + L     + ESQR   A + +                 G+       D  +  DF          +G  P S S QIYLTFPAESTF ++DV+ YF ++GPV+DVRIP Q++RMFGFV+F  PETV  IL + NPHFIC SRVLVKPY+EK K  D+
Sbjct:  264 RPCHYFSKGICKNGQNCHYSHHQVYQDALAGAAINGDVYNHQPGGVTPGSLETLEMEITELLNSRRGQPVSIASLPTLYG-EKYGKGLQADGYLTESQRHGKAGYSLTRLLSRLNKIRVIERPHGQHSVVLAEDAAKYMDFRGGGGGGGGDTGSVPAS-SHQIYLTFPAESTFAEDDVANYFGQYGPVRDVRIPCQERRMFGFVSFQSPETVSTILMRRNPHFICGSRVLVKPYREKSKCVDR 504          
BLAST of Phvul.002G034300.1 vs. DB:Swiss
Match: C3H51_ORYSJ (Putative zinc finger CCCH domain-containing protein 51 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0583300 PE=4 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 3.719e-29
Identity = 90/227 (39.65%), Postives = 118/227 (51.98%), Query Frame = 1
Query:  832 LYFARGFCKNGTNCKFLHAAFSDSLDATVGSP----SKLEGMEQHREDFVRFKVP-QLQRLGSGSSATAREKYYEFL-----MQESQR------AAAAFMMG--------EEFGSFGWDRPE--RNDFLAPISGDK------PNSASRQIYLTFPAESTFKDEDVSEYFSKFGPVQDVRIPYQQKRMFGFVTFVYPETVRLILSKGNPHFICDSRVLVKPYKEKGKV 1416
             +F RG+CK G NC+F H +  +  +     P    SKL+ ME  RE  +    P  + RL S       EKY + L     + ESQ+      +  + +MG         E G +     E  R  ++  +            + S QIY+TFP  S F D+DV  YF +FGPV  VRIPYQ+KRMFGFV+F+Y ETVRLILSKG  HFIC  RVLVK Y EK ++
Sbjct:  184 FHFFRGYCKKGVNCQFFHGSVPELHNPRQVHPFASLSKLD-MEI-RELLIGIPPPVAVDRLPS----MYFEKYGKPLRPDGWLTESQQHGRTGCSLTSLLMGLNTIRVVEREHGQYHVVLVEDARKKYMDCLGLAHSCNLMDTGTGSNQIYMTFPVHSKFTDDDVENYFKQFGPVSGVRIPYQEKRMFGFVSFLYTETVRLILSKGTAHFICGLRVLVKRYMEKSEL 404          
The following BLAST results are available for this feature:
BLAST of Phvul.002G034300.1 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot)
Total hits: 8
Match NameE-valueIdentityDescription
C3H55_ARATH7.701e-12541.71Zinc finger CCCH domain-containing protein 55 OS=A... [more]
C3H53_ORYSJ5.062e-9638.34Zinc finger CCCH domain-containing protein 53 OS=O... [more]
C3H46_ARATH1.492e-9238.35Zinc finger CCCH domain-containing protein 46 OS=A... [more]
C3H23_ORYSJ2.759e-8735.96Zinc finger CCCH domain-containing protein 23 OS=O... [more]
C3H22_ORYSJ9.994e-7939.21Zinc finger CCCH domain-containing protein 22 OS=O... [more]
C3H18_ARATH3.535e-3737.80Zinc finger CCCH domain-containing protein 18 OS=A... [more]
C3H54_ORYSJ3.950e-3438.27Zinc finger CCCH domain-containing protein 54 OS=O... [more]
C3H51_ORYSJ3.719e-2939.65Putative zinc finger CCCH domain-containing protei... [more]
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InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 273..297
e-value: 5.8E-4
score: 29.2
IPR000571Zinc finger, CCCH-typePFAMPF00642zf-CCCHcoord: 273..295
e-value: 2.9E-5
score: 23.9
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 271..298
score: 13.094
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 394..464
e-value: 4.8E-9
score: 46.0
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 406..451
e-value: 7.9E-7
score: 28.8
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 393..469
score: 10.292
NoneNo IPR availableGENE3D4.10.1000.10coord: 273..345
e-value: 4.2E-5
score: 25.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 608..637
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 468..482
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 677..699
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 468..488
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 389..489
e-value: 1.8E-11
score: 46.3
IPR034365AtC3H46-like, RNA recognition motifCDDcd12458RRM_AtC3H46_likecoord: 395..464
e-value: 6.89756E-40
score: 138.739
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 405..488
IPR036855Zinc finger, CCCH-type superfamilySUPERFAMILY90229CCCH zinc fingercoord: 274..296

Sequences
The following sequences are available for this feature:

protein sequence of Phvul.002G034300.1_Pv_G19833_v2.1

>Phvul.002G034300.1_Pv_G19833_v2.1 ID=Phvul.002G034300.1_Pv_G19833_v2.1; Name=Phvul.002G034300.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=700bp
MLRLQNLLLLLRYVVTDNKNIIFFLFFFLFLFLSSFIHHPLAFFFISCSH
PFSKLSFLMGSCEATNVVLSKIKNFDPENASKIMGYLLMNLEDSELIRVA
CSPDHVLHSLILRVKSHMGLSLSTPSSPSLPPSPLNPIARITGSSTNPFS
RAGPTNGFDFARNPSSPSAHSHAWNFPNNNPISPKSTPLLSYDNIRALSP
RVNGECDFVDEQQVNEYFPFLNDSSKNEDLVDPRLELGVGAQNWHSGDSH
LHRRSYSASDVGFGCEEAAPGLGYKPCLYFARGFCKNGTNCKFLHAAFSD
SLDATVGSPSKLEGMEQHREDFVRFKVPQLQRLGSGSSATAREKYYEFLM
QESQRAAAAFMMGEEFGSFGWDRPERNDFLAPISGDKPNSASRQIYLTFP
AESTFKDEDVSEYFSKFGPVQDVRIPYQQKRMFGFVTFVYPETVRLILSK
GNPHFICDSRVLVKPYKEKGKVPDKRQHPQQQLERGDLSPCLSPSGFGSK
EPYDFHLGSRMLYNPHDILLRRRMEEQAEWQQVLELQERGLKNLQLPDFK
NNPIHHHQRSLSVGNPLVLPHQLHGHINDAGLSPNSIKGDIAGYGGTFTS
TNSLGIASEQQQSQKEVELDDSESGNIKDGGNTKNLDLSSSVEQALPDSL
FASPTKAAGDYHADFSTLAEVNNSAVFSSSSSFQQKLEPTTSSSDSASR*
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mRNA from alignment at Chr02:3422964..3428622-

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Phvul.002G034300.1_Pv_G19833_v2.1 ID=Phvul.002G034300.1_Pv_G19833_v2.1; Name=Phvul.002G034300.1; organism=Phaseolus vulgaris; type=mRNA; length=5659bp; location=Sequence derived from: Chr02:3422964..3428622- (Phaseolus vulgaris
AAAAAAAATTGAAAAAGTTGTTTTGTTTTTTGTTTTTTAAAGAAAACCCT GAGGCATTTTGTAACTCATGTTGTTGACGATTATCCATCCATTCCTGTTG TGGATCTGAGAAATCTATAGGAGAGAGATTACAGTGTGAGAGTGAGTGTG TGAGTGAGTGAGTCTGTTGTTTGTTCAACGTATGCTTAGGCTCCAAAACC TACTGCTACTGCTAAGGTATGTTGTAACAGACAACAAAAACATCATCTTT TTCTTGTTCTTCTTCTTGTTCTTGTTCCTCAGCAGCTTCATTCACCACCC TCTGGCATTTTTTTTCATTTCTTGTTCACACCCTTTTTCCAAGCTTTCGT TTCTGATGGGTTCATGCGAAGCCACGAATGTGGTTCTTTCAAAGATTAAA AATTTTGATCCTGAGAATGCTTCGAAAATCATGGGGTACCTTCTCATGAA CCTTGAAGACTCTGAACTCATTCGTGTGGCTTGTAGCCCTGACCATGTGC TTCACTCTCTCATTCTGAGGGTGAAGTCGCACATGGGTCTTTCACTCTCC ACTCCTTCTTCTCCATCGCTTCCTCCTTCGCCTCTTAACCCCATAGCAAG AATCACTGGTTCCTCCACCAACCCTTTTTCCAGAGCAGGACCCACCAACG GTTTTGACTTTGCTAGAAACCCTTCTTCGCCTTCTGCTCACTCTCACGCT TGGAACTTCCCGAACAACAACCCCATTAGTCCAAAGTCCACTCCTTTACT CTCGTACGATAACATCCGAGCACTCTCACCGCGTGTCAACGGGGAGTGTG ACTTTGTTGATGAGCAGCAGGTGAATGAGTACTTTCCCTTCCTCAATGAC TCCTCCAAGAACGAGGATTTGGTCGATCCACGCCTTGAATTGGGTGTTGG GGCTCAGAATTGGCACTCTGGGGACTCGCATTTGCACAGGAGGAGTTACT CGGCGAGTGATGTTGGTTTTGGGTGTGAAGAAGCTGCCCCTGGACTTGGA TACAAGCCGTGCCTTTACTTTGCTAGAGGTTTTTGTAAAAATGGCACCAA TTGTAAGTTTCTTCATGCTGCTTTCTCGGATTCACTGGATGCCACTGTTG GCTCTCCGAGTAAGCTTGAGGGGATGGAACAACACCGTGAAGATTTTGTT AGGTTCAAGGTCCCACAGCTTCAAAGATTGGGGTCTGGAAGTTCTGCAAC CGCACGTGAGAAGTACTATGAGTTTTTGATGCAGGAATCCCAAAGGTCTA GCACAATTTAGAAGGAATCCTCTATAGTTATGTTTAATTTTGTTTTGCCT TTCTAGCTGTAAAGTGATGTTTAACTGTTGTACATTCTTGTGCTGCTTTT CAGGGCAGCAGCAGCATTCATGATGGGGGAAGAATTCGGCAGTTTTGGCT GGGACAGGCCTGAAAGGAATGACTTTTTAGCCCCAATTTCTGGGGATAAG CCCAACTCGGCCTCCCGACAGATTTACTTGACGTTTCCTGCTGAAAGTAC CTTCAAAGATGAAGATGTCTCGGAGTACTTCAGGTAGAATATGCTATAAC ATATGCACAAATGTGGTGCCATTGAAAAATGTGAAGTTGTGAAATGTTAT ACTGCATACGTGTAATGTGGCAGGATTCTGCTGTTGCTATTAACTAATCC AGGTTTTCCACTGTTTTCGTTGGATGCACATCTTAAATATTTTTGGTTGA GCTCCTTAGTGTGTGTTTTTTGTTGGAAGCTCCAAAAGAGATGGATTTTG GTTGCCTCTGATGCTGATACCTATACCCGAGTGGTGGAATTTGTGATCCT TGATTGATTTGTGTGTGCCATGGGATTAAGAGTCTTTTGCTGGCCTGGCT CTTCAGTAATGTTGAGTTCCCAATTTAAACTCAGTAATCATTGGTCATGA TGTTACTGAATCTAGAATTTCAGTTTCGAGTTATGTTGTATGTGTAACAT TTAGAGTTTGTCTTTTATAGGCGATAAACTTTCCAGGGCATGATGTATGT CTCCCATGAGGAGACTGGGTTAATCCCATATTTTCAGGTATCACTTCAAT GTGTTTTCCCTTAAAGATAAAATGGCTCAGTTTCTCTTGTTAAGAAGCTT TGGCAAATAAGGAAGTTCATAGCTTGATAGTTATCACTTATCAAAAGTCA TGATCAGTACCGCAAGGATGTGTATGCATGTCTCGATCAACACAGTTGTG CAGTTTTTCAGCTTACCAATGACTATCTATCGGTTTGTCAGAGGATATAA TCTACATCATTGGTCAATCCATATCTAAATAAAACAATCTCGAACGTGAT AATTACTAAATAGTATGTATTGTTCAAACTATAAATTTACATCTTTGGTT GGTGTAGTCTGTGTTATGATGCTATACATGAAGTGAGGTGTTTTTATGAT TGAATTTAAATTTTATTTTCATTGTATGAAATATCTGTCATAATTTATTA GGTTGTAATGTATCATACTGGGTTTGAAAGAAAAGCCCAAGAAGTGGGTT TTTTGAGCATGACATTGATTTAAAGGTTTGATGTGTGATGTAAAGTTATA CAGTTGCTTTCTTATAATTTTGTGCATACTGATATCCACCTGATGGTGCA CACCATCCTAAGGTATACATGGCAACTTTTGTTTTTGAAACTTAGGATTT AATCTAGATATTGTATGTGAAAGGTATAGTAATTGCTAAATGATGGAATA GGATAGATGCAGGCATGTGTATAGTATAGGGTTTGAAACTGGCTGGAGAA GATTTCAGTTTAAAAAGTGATATTTTGTTCTATTATTATTTTAGATTAAG TGTCTTTGTAATGGTGTGGCTAACTTCTTCGTAATGGTTGGAATTGTAAT CTCTAATTGACATTACTTTGCGTTATAAGTTAATATTTTCAATTGCATAT AACACAGTAGTGGCTGTGCATGTGGAAGTTCTTATTGTTTCTGTACATAT TGCTGCACACATGCTATTGGATCCAAATTGAGGGAGCTCATTGAATAGCT ACTTTTGTTCTTTTGTAGCAAATTTGGACCTGTTCAAGACGTGAGAATTC CTTATCAGCAAAAGCGGATGTTTGGGTTTGTTACCTTTGTCTATCCCGAG ACAGTGAGACTCATATTATCCAAAGGGAATCCTCATTTCATCTGTGATTC ACGCGTACTTGTCAAGCCTTACAAGGAGAAGGGAAAAGTCCCTGACAAGT AAGTGGGCATCATGTTTTTACTCTGTTTGTATCTTACTATTCCTAAATTT ATACTGTTTTGATTATTTTATGCAGGAGACAACATCCACAACAGCAATTA GAGAGAGGAGATCTTTCTCCATGTTTGAGCCCTTCTGGATTTGGCTCTAA AGAACCATATGATTTCCATCTTGGTAATCAAATTTCTCCTATTGACATTG TTGAAACCCTACATCAACTAGACATGGATCATTGGGCCAATGTAGCACTT GCAAGGCTTAGACCATTTTCACCTTCTAAGTTAGTTTTGTAGGGTTGAGT TGGGTCCTACAGTCTAAAATCTAAGATTATACAAGGGTCTATCATAAATC CATTATCGGGTCGTCCTATTTGTCTATGTCTGGATGTTCAGTCTTAGTTA TTGGGATGTGTAAAACCCCCACATCAACTATAGAACTGATATGAGGCCAA TGTAATCCTTACAAGGCTTCGGCAGTCATTACCTTACAAGTCAGTTTGTC GGATTGAGTTGTCTCTAGGCCCAAATTTAAAGATGTTCTAAGAGTTTTTG TAGAACTTTCATTGGGTTACCTGTATTTTATGCTCTAGATGTCTATTCTT AGATGGGAGCTGGTGTTGTTATTGGACCGCTTGCATCTGTCTCTGTTTTA GATGTTTAGACTAGAGGTGAGAGGGTGTTTTGAGATTCTACATCAACTCG GTATATATAGTTCTTATATATGGCTTGGACAATTCTTGCCTTACATGTCA GTTTTGTAAGTTAGATCCTAAGTCCAATATCAAGAGACATTTTTATTCTA CTTAATTTTTTGAGAGTGTACTTAAAAGAGTTGCTATATATGTTCCCTTT CCATTGAATTCCCCAAACTTTCCAGAAAAGTTTTTGCACATAGGAGTCTA TCATGCTCATTTCATTTTATTATTACCAACTTTGTTTTATGCAGGGTCAA GGATGTTGTATAATCCACATGATATCTTATTGAGAAGAAGAATGGAAGAG CAGGCTGAATGGCAGCAAGTCCTTGAGCTTCAAGAAAGGGGGCTGAAGAA CCTACAGCTTCCCGACTTCAAGAATAATCCTATTCACCATCACCAACGCA GTCTTTCTGTTGGTAATCCTTTGGTCTTGCCTCATCAACTTCATGGTCAC ATTAATGATGCAGGTCTTTCTCCTAATAGCATTAAAGGCGATATTGCGGG TTAGTCAATTGATGGTAGCTTATGACAGTTTAATGAACAAGATTATAGAC AGTTTACATCTTTGTTGTTTCAATGACAGGCTATGGTGGCACCTTCACTT CTACCAATTCTTTAGGCATTGCATCTGAGCAGCAGCAGTCGCAGAAAGAA GTTGAGCTAGATGATTCTGAGAGCGGGAATATAAAGGATGGTGGAAATAC CAAAAACTTGGATCTTAGTAGTAGGTATGAGCATCATTACTTTGTCTTAG CTCTTATTTCTATTGCATTGTGGTGCATCATTTTTGGCAGCATTCCTCAT TTTTCATTTCAAATTTTCTGATATTGTGTTCTTTCATGATCCTCTCTTGG CCTTTGAGAAGTGTGGAGCAGGCACTCCCTGACAGTCTCTTTGCTTCACC AACAAAAGCAGCTGGAGATTATCATGCTGACTTCTCTACATTGGCAGAGG TCAACAACAGTGCTGTTTTTTCATCTAGTTCATCTTTTCAACAAAAGCTA GAACCAACAACCTCCTCTAGCGACTCGGCTTCCCGTTAGTTTTCCTTACA ATTCAAGGTACTGCTAATTGCTCTCTCAATGTCAGTTCCCTGCATGATAA TGTGGACAGAATTCTTCTGACAAGTTGTCATTTTTCTTGCTCCTTTCCGT TACTCAAGATTTGGAATTGTAGGTAATAAGATTAGAAATGGCCAGCTGGA GATAATTTTTATTAGGGTATGTTTTTGGTTTCCTTCTCACTCTTGGAAAA ATGGTTTGTTCTTTACAAGTAAACATCATCTCATGATTCTTCTCTGGTTG CTGGTTTGTTTCTTTGCAGATTTATAGAAGCTTATAGAAGAATCTTCTAG ATGTATAGCGAAATACACCTAGATCAGAAGATTAGATCCTCTAGAGAAGA ACCAAATGAGATCAGCACTATGATCAATACATACTACTAACAGCAGGCAT ACATGTTGCATACTTGGACAGACATATTAGCTTATAAGACTAGTTTTTCT TTTCTTCCTTTCCTTTTCTGTTGTACTCCTATTCCTCTCCACATAAATTA CTATAGATGTGTATGTTTCACCAGACTGAGGCAGAAGAAAGTACTGTTGT TTTACTTTAGCTTCATGTATAAAACTTGGTCTACCATTTAGTTCCTATTT TCTACTATTTTTTCCCTGTTTGGGAGAAGTGCTCCCTCTGCCCCTGACCA CAAATTAGTCTTCATTATTGGCTATCATTTACCATTAATGGTCTCAAGCT AATTCATGC
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Coding sequence (CDS) from alignment at Chr02:3422964..3428622-

>Phvul.002G034300.1_Pv_G19833_v2.1 ID=Phvul.002G034300.1_Pv_G19833_v2.1; Name=Phvul.002G034300.1; organism=Phaseolus vulgaris; type=CDS; length=2100bp; location=Sequence derived from: Chr02:3422964..3428622- (Phaseolus vulgaris
ATGCTTAGGCTCCAAAACCTACTGCTACTGCTAAGGTATGTTGTAACAGA
CAACAAAAACATCATCTTTTTCTTGTTCTTCTTCTTGTTCTTGTTCCTCA
GCAGCTTCATTCACCACCCTCTGGCATTTTTTTTCATTTCTTGTTCACAC
CCTTTTTCCAAGCTTTCGTTTCTGATGGGTTCATGCGAAGCCACGAATGT
GGTTCTTTCAAAGATTAAAAATTTTGATCCTGAGAATGCTTCGAAAATCA
TGGGGTACCTTCTCATGAACCTTGAAGACTCTGAACTCATTCGTGTGGCT
TGTAGCCCTGACCATGTGCTTCACTCTCTCATTCTGAGGGTGAAGTCGCA
CATGGGTCTTTCACTCTCCACTCCTTCTTCTCCATCGCTTCCTCCTTCGC
CTCTTAACCCCATAGCAAGAATCACTGGTTCCTCCACCAACCCTTTTTCC
AGAGCAGGACCCACCAACGGTTTTGACTTTGCTAGAAACCCTTCTTCGCC
TTCTGCTCACTCTCACGCTTGGAACTTCCCGAACAACAACCCCATTAGTC
CAAAGTCCACTCCTTTACTCTCGTACGATAACATCCGAGCACTCTCACCG
CGTGTCAACGGGGAGTGTGACTTTGTTGATGAGCAGCAGGTGAATGAGTA
CTTTCCCTTCCTCAATGACTCCTCCAAGAACGAGGATTTGGTCGATCCAC
GCCTTGAATTGGGTGTTGGGGCTCAGAATTGGCACTCTGGGGACTCGCAT
TTGCACAGGAGGAGTTACTCGGCGAGTGATGTTGGTTTTGGGTGTGAAGA
AGCTGCCCCTGGACTTGGATACAAGCCGTGCCTTTACTTTGCTAGAGGTT
TTTGTAAAAATGGCACCAATTGTAAGTTTCTTCATGCTGCTTTCTCGGAT
TCACTGGATGCCACTGTTGGCTCTCCGAGTAAGCTTGAGGGGATGGAACA
ACACCGTGAAGATTTTGTTAGGTTCAAGGTCCCACAGCTTCAAAGATTGG
GGTCTGGAAGTTCTGCAACCGCACGTGAGAAGTACTATGAGTTTTTGATG
CAGGAATCCCAAAGGGCAGCAGCAGCATTCATGATGGGGGAAGAATTCGG
CAGTTTTGGCTGGGACAGGCCTGAAAGGAATGACTTTTTAGCCCCAATTT
CTGGGGATAAGCCCAACTCGGCCTCCCGACAGATTTACTTGACGTTTCCT
GCTGAAAGTACCTTCAAAGATGAAGATGTCTCGGAGTACTTCAGCAAATT
TGGACCTGTTCAAGACGTGAGAATTCCTTATCAGCAAAAGCGGATGTTTG
GGTTTGTTACCTTTGTCTATCCCGAGACAGTGAGACTCATATTATCCAAA
GGGAATCCTCATTTCATCTGTGATTCACGCGTACTTGTCAAGCCTTACAA
GGAGAAGGGAAAAGTCCCTGACAAGAGACAACATCCACAACAGCAATTAG
AGAGAGGAGATCTTTCTCCATGTTTGAGCCCTTCTGGATTTGGCTCTAAA
GAACCATATGATTTCCATCTTGGGTCAAGGATGTTGTATAATCCACATGA
TATCTTATTGAGAAGAAGAATGGAAGAGCAGGCTGAATGGCAGCAAGTCC
TTGAGCTTCAAGAAAGGGGGCTGAAGAACCTACAGCTTCCCGACTTCAAG
AATAATCCTATTCACCATCACCAACGCAGTCTTTCTGTTGGTAATCCTTT
GGTCTTGCCTCATCAACTTCATGGTCACATTAATGATGCAGGTCTTTCTC
CTAATAGCATTAAAGGCGATATTGCGGGCTATGGTGGCACCTTCACTTCT
ACCAATTCTTTAGGCATTGCATCTGAGCAGCAGCAGTCGCAGAAAGAAGT
TGAGCTAGATGATTCTGAGAGCGGGAATATAAAGGATGGTGGAAATACCA
AAAACTTGGATCTTAGTAGTAGTGTGGAGCAGGCACTCCCTGACAGTCTC
TTTGCTTCACCAACAAAAGCAGCTGGAGATTATCATGCTGACTTCTCTAC
ATTGGCAGAGGTCAACAACAGTGCTGTTTTTTCATCTAGTTCATCTTTTC
AACAAAAGCTAGAACCAACAACCTCCTCTAGCGACTCGGCTTCCCGTTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR034365AtC3H46-like_RRM
IPR035979RBD_domain_sf
IPR036855Znf_CCCH_sf
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0003676nucleic acid binding