Transcript Overview
| Name | Phvul.002G038300.1 |
|---|
| Unique Name | Phvul.002G038300.1_Pv_G19833_v2.1 |
|---|
| Type | mRNA |
|---|
| Organism | Phaseolus vulgaris (Common bean) |
|---|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Phvul.002G038300.1.v2.1.five_prime_UTR.1 | Phvul.002G038300.1.v2.1.five_prime_UTR.1_Pv_G19833_v2.1 | Phaseolus vulgaris | five_prime_UTR |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Phvul.002G038300.1.v2.1.CDS.1 | Phvul.002G038300.1.v2.1.CDS.1_Pv_G19833_v2.1 | Phaseolus vulgaris | CDS |
| Phvul.002G038300.1.v2.1.CDS.2 | Phvul.002G038300.1.v2.1.CDS.2_Pv_G19833_v2.1 | Phaseolus vulgaris | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Phvul.002G038300.1.v2.1.three_prime_UTR.1 | Phvul.002G038300.1.v2.1.three_prime_UTR.1_Pv_G19833_v2.1 | Phaseolus vulgaris | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Phvul.002G038300.1 | Phvul.002G038300.1_Pv_G19833_v2.1-protein | Phaseolus vulgaris | polypeptide |
| Phvul.002G038300.1_Pv_G19833_v2.1 | Phvul.002G038300.1_Pv_G19833_v2.1 | Phaseolus vulgaris | polypeptide |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR009291 | Vacuolar protein sorting-associated protein 62 | PFAM | PF06101 | Vps62 | coord: 57..598
e-value: 2.0E-256
score: 851.5 |
Sequences
The
following sequences are available for this feature:
protein sequence of Phvul.002G038300.1_Pv_G19833_v2.1 >Phvul.002G038300.1_Pv_G19833_v2.1 ID=Phvul.002G038300.1_Pv_G19833_v2.1; Name=Phvul.002G038300.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=601bp
MMGFVRSNPNMNTKQQLLRFLFYLMSLFPQLLHLLQMFCFKFNSFRKGIN
NTLITLPQAFSLSSPLPQWPQVTGQDFASGIVNLGEIEVRKVTGFEFVWN
SNIGKPVAFYKPVGIPDGFHVLGHYCQPSDKPLWGFVLVVREVEAVSSER
SNYDKLPALKNPLDYMLVWCSNAGRRELAIGCAYFWVPQPPEGYSALGYL
VTNRPEKPNLDEMICVRADLTDKYQPYRLMLDATSVNPEFPFQVWSLRPC
DRGMLGKGVSVGTFFCTSHWNKGEELPVVCLKNLNPMLPAMPHLHQIHAL
VQHYGPTVFFHPKEVYLPSSVDWFFNNGALLYRKGVSKGEAIDAAGSNLP
GGGTNDGEFWIDLPSDDRRDFVKHGDLNSAKLYVHVKPALGGTFTDIAMW
VFCPFNGPSTLKIGITSRAFTRVGEHVSDWEHFTLRVCNFSGELWSIYFS
QHSGGKWVDAYELEYINGNKAIVYASKSGHASYPHPGTYIQGSSKLGIGI
RNDAGRSDLYVDSSVQYEIVAAEYLGDAVTEPQWLQFMRQWGPKICYDSK
TELDKIINTLPRGLRNPFVNLIKKLPVELYGEEGPTGPKEKNNWIGDERW
* back to topmRNA from alignment at Chr02:3674234..3676833+ Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Phvul.002G038300.1_Pv_G19833_v2.1 ID=Phvul.002G038300.1_Pv_G19833_v2.1; Name=Phvul.002G038300.1; organism=Phaseolus vulgaris; type=mRNA; length=2600bp; location=Sequence derived from: Chr02:3674234..3676833+ (Phaseolus vulgaris
GTTGGAGAATCAAACGCCAGGAAAGAGAAGAACCAATGATTAAGAAACAA
ATAACACGCAAGAAGGTATGAGAACAAGTTCTTCTCTTTCCGCGTGTTCT
GTGGAAGAGAGAGAGTGTGGCAAAAAGGGGGTCCCCCAAATTGATCAACC
TTTGAAAAGAAAATGATTGTTCAACCCTGATTTCAAGCAATTGATAATGA
TGGGTTTTGTGAGATCTAATCCGAACATGAATACAAAGCAGCAATTGTTG
AGGTTTTTGTTCTATTTGATGTCTCTGTTTCCACAACTATTGCATCTCCT
CCAAATGTTTTGCTTCAAATTCAACAGCTTTCGGAAAGGGATAAACAACA
CTCTCATCACTCTACCACAAGCCTTTTCACTTTCCTCTCCGCTTCCCCAA
TGGCCTCAAGGTTATTATTCCCCAAAACACTCTTCATAAATCTTCTAAAC
TTGCTATTTCATATATTTTCATTATTATATATTTTTCTCAATACCATGAT
TTTACTGTTGTTTTTCTTTAAATCAGTATTTTTTAGGAAGTTGAGTGCCT
GTAGTATATTTTGGAGTCAAAACTTGGATGCAGGTTGTTAAGTGATGTTA
GTGTTGTGCTTTGATCAGAATTGAATGTACTATGAACATTTTTCATGGAC
TATGTGATAAAACTTCTATTTTAGTTAGAGAATAGTACAAAAAAAAGTAA
GGCACTGTATAATATGTGTACTGTCTGTAAAAACTATACAAAGGTAATAT
TGGGCATGTTTCAGTTACTTGTATCTACATTAATGATTAATCCATGCCGT
GATTTTGTGTATGTAGTCACAGGACAAGATTTTGCTTCTGGAATTGTAAA
CCTTGGTGAAATAGAAGTGCGCAAGGTCACTGGGTTTGAGTTTGTTTGGA
ACAGCAACATTGGAAAGCCTGTTGCATTCTATAAACCTGTGGGAATACCA
GATGGGTTCCATGTCCTTGGTCACTATTGTCAGCCAAGCGACAAGCCGTT
ATGGGGTTTTGTGCTTGTTGTTAGGGAAGTGGAAGCTGTCTCATCTGAAA
GAAGTAACTATGACAAGTTACCAGCTTTGAAGAACCCTCTTGATTATATG
TTGGTATGGTGTTCCAATGCAGGAAGAAGGGAATTGGCAATTGGTTGTGC
ATACTTTTGGGTGCCTCAGCCTCCTGAAGGTTACAGTGCCCTTGGCTACT
TGGTTACTAACAGGCCTGAGAAGCCCAATTTGGATGAAATGATTTGTGTT
CGTGCCGACCTCACTGATAAGTATCAACCTTACCGGCTGATGCTTGATGC
TACTTCAGTAAATCCTGAGTTTCCATTTCAGGTGTGGAGTTTGAGACCTT
GTGACCGTGGCATGCTGGGAAAAGGAGTTTCAGTAGGGACTTTTTTCTGC
ACTAGTCATTGGAACAAGGGAGAAGAGCTACCTGTTGTGTGCTTAAAGAA
CTTGAATCCTATGCTACCTGCAATGCCACACCTCCACCAAATACACGCAC
TTGTACAGCACTATGGTCCTACTGTTTTCTTTCATCCTAAGGAAGTTTAC
TTGCCCTCTTCTGTTGATTGGTTTTTCAATAACGGAGCCTTGTTGTACAG
AAAGGGCGTGAGTAAAGGAGAGGCCATTGATGCTGCTGGCTCAAATTTGC
CAGGTGGGGGAACTAATGATGGGGAGTTTTGGATAGATTTGCCAAGTGAT
GATAGAAGGGATTTTGTCAAACATGGGGACTTGAATAGTGCTAAGCTTTA
TGTTCATGTGAAGCCTGCTCTTGGTGGAACTTTTACTGATATTGCTATGT
GGGTGTTTTGCCCTTTCAATGGACCGTCTACTCTGAAAATTGGAATTACA
AGTAGGGCTTTTACCAGGGTCGGAGAGCATGTTTCTGACTGGGAGCATTT
TACACTTCGTGTATGCAACTTCTCTGGAGAGTTGTGGAGTATATATTTCT
CACAGCACAGTGGTGGTAAATGGGTGGATGCCTATGAACTGGAGTATATT
AATGGCAATAAAGCTATCGTCTACGCATCAAAAAGTGGACATGCAAGTTA
CCCCCACCCTGGAACATATATCCAAGGGTCTTCAAAACTTGGGATTGGTA
TTAGGAATGATGCTGGTCGTAGTGATTTGTACGTGGATTCCAGTGTTCAA
TACGAGATTGTTGCAGCTGAGTATCTGGGAGATGCTGTCACAGAGCCTCA
GTGGTTGCAGTTTATGAGACAGTGGGGTCCTAAAATTTGTTATGATTCGA
AAACTGAGTTAGATAAGATAATTAACACTCTACCTCGGGGGCTTCGAAAT
CCATTTGTTAACCTGATTAAAAAACTTCCAGTGGAGCTGTATGGTGAGGA
AGGTCCTACAGGGCCAAAAGAGAAAAATAACTGGATAGGAGATGAAAGAT
GGTGAGAACTTGTATGAAACAAATTGGTCACATCGACAAGTTCTTTTTTT
CTGGGCCAGAATGTTGTAACTATATGTTGTTGTTCGTAATATATATATAT
ATATACATAGAGAGAGAGAAGTTATATATATACTTCTACATATTGACACT
CTGCTCCACTACACAATCTCTAATTGATTATATAAAAAAATAGTATTTTT
back to topCoding sequence (CDS) from alignment at Chr02:3674234..3676833+ >Phvul.002G038300.1_Pv_G19833_v2.1 ID=Phvul.002G038300.1_Pv_G19833_v2.1; Name=Phvul.002G038300.1; organism=Phaseolus vulgaris; type=CDS; length=1803bp; location=Sequence derived from: Chr02:3674234..3676833+ (Phaseolus vulgaris
ATGATGGGTTTTGTGAGATCTAATCCGAACATGAATACAAAGCAGCAATT
GTTGAGGTTTTTGTTCTATTTGATGTCTCTGTTTCCACAACTATTGCATC
TCCTCCAAATGTTTTGCTTCAAATTCAACAGCTTTCGGAAAGGGATAAAC
AACACTCTCATCACTCTACCACAAGCCTTTTCACTTTCCTCTCCGCTTCC
CCAATGGCCTCAAGTCACAGGACAAGATTTTGCTTCTGGAATTGTAAACC
TTGGTGAAATAGAAGTGCGCAAGGTCACTGGGTTTGAGTTTGTTTGGAAC
AGCAACATTGGAAAGCCTGTTGCATTCTATAAACCTGTGGGAATACCAGA
TGGGTTCCATGTCCTTGGTCACTATTGTCAGCCAAGCGACAAGCCGTTAT
GGGGTTTTGTGCTTGTTGTTAGGGAAGTGGAAGCTGTCTCATCTGAAAGA
AGTAACTATGACAAGTTACCAGCTTTGAAGAACCCTCTTGATTATATGTT
GGTATGGTGTTCCAATGCAGGAAGAAGGGAATTGGCAATTGGTTGTGCAT
ACTTTTGGGTGCCTCAGCCTCCTGAAGGTTACAGTGCCCTTGGCTACTTG
GTTACTAACAGGCCTGAGAAGCCCAATTTGGATGAAATGATTTGTGTTCG
TGCCGACCTCACTGATAAGTATCAACCTTACCGGCTGATGCTTGATGCTA
CTTCAGTAAATCCTGAGTTTCCATTTCAGGTGTGGAGTTTGAGACCTTGT
GACCGTGGCATGCTGGGAAAAGGAGTTTCAGTAGGGACTTTTTTCTGCAC
TAGTCATTGGAACAAGGGAGAAGAGCTACCTGTTGTGTGCTTAAAGAACT
TGAATCCTATGCTACCTGCAATGCCACACCTCCACCAAATACACGCACTT
GTACAGCACTATGGTCCTACTGTTTTCTTTCATCCTAAGGAAGTTTACTT
GCCCTCTTCTGTTGATTGGTTTTTCAATAACGGAGCCTTGTTGTACAGAA
AGGGCGTGAGTAAAGGAGAGGCCATTGATGCTGCTGGCTCAAATTTGCCA
GGTGGGGGAACTAATGATGGGGAGTTTTGGATAGATTTGCCAAGTGATGA
TAGAAGGGATTTTGTCAAACATGGGGACTTGAATAGTGCTAAGCTTTATG
TTCATGTGAAGCCTGCTCTTGGTGGAACTTTTACTGATATTGCTATGTGG
GTGTTTTGCCCTTTCAATGGACCGTCTACTCTGAAAATTGGAATTACAAG
TAGGGCTTTTACCAGGGTCGGAGAGCATGTTTCTGACTGGGAGCATTTTA
CACTTCGTGTATGCAACTTCTCTGGAGAGTTGTGGAGTATATATTTCTCA
CAGCACAGTGGTGGTAAATGGGTGGATGCCTATGAACTGGAGTATATTAA
TGGCAATAAAGCTATCGTCTACGCATCAAAAAGTGGACATGCAAGTTACC
CCCACCCTGGAACATATATCCAAGGGTCTTCAAAACTTGGGATTGGTATT
AGGAATGATGCTGGTCGTAGTGATTTGTACGTGGATTCCAGTGTTCAATA
CGAGATTGTTGCAGCTGAGTATCTGGGAGATGCTGTCACAGAGCCTCAGT
GGTTGCAGTTTATGAGACAGTGGGGTCCTAAAATTTGTTATGATTCGAAA
ACTGAGTTAGATAAGATAATTAACACTCTACCTCGGGGGCTTCGAAATCC
ATTTGTTAACCTGATTAAAAAACTTCCAGTGGAGCTGTATGGTGAGGAAG
GTCCTACAGGGCCAAAAGAGAAAAATAACTGGATAGGAGATGAAAGATGG
TGA back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR009291 | Vps62 |
|
