|
|
Transcript Overview
| Name | Phvul.002G051300.1 |
|---|
| Unique Name | Phvul.002G051300.1_Pv_G19833_v2.1 |
|---|
| Type | mRNA |
|---|
| Organism | Phaseolus vulgaris (Common bean) |
|---|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Phvul.002G051300.1.v2.1.CDS.4 | Phvul.002G051300.1.v2.1.CDS.4_Pv_G19833_v2.1 | Phaseolus vulgaris | CDS |
| Phvul.002G051300.1.v2.1.CDS.3 | Phvul.002G051300.1.v2.1.CDS.3_Pv_G19833_v2.1 | Phaseolus vulgaris | CDS |
| Phvul.002G051300.1.v2.1.CDS.2 | Phvul.002G051300.1.v2.1.CDS.2_Pv_G19833_v2.1 | Phaseolus vulgaris | CDS |
| Phvul.002G051300.1.v2.1.CDS.1 | Phvul.002G051300.1.v2.1.CDS.1_Pv_G19833_v2.1 | Phaseolus vulgaris | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Phvul.002G051300.1.v2.1.three_prime_UTR.1 | Phvul.002G051300.1.v2.1.three_prime_UTR.1_Pv_G19833_v2.1 | Phaseolus vulgaris | three_prime_UTR |
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Phvul.002G051300.1.v2.1.five_prime_UTR.1 | Phvul.002G051300.1.v2.1.five_prime_UTR.1_Pv_G19833_v2.1 | Phaseolus vulgaris | five_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Phvul.002G051300.1 | Phvul.002G051300.1_Pv_G19833_v2.1-protein | Phaseolus vulgaris | polypeptide |
| Phvul.002G051300.1_Pv_G19833_v2.1 | Phvul.002G051300.1_Pv_G19833_v2.1 | Phaseolus vulgaris | polypeptide |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 43..57 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 43..80 |
Sequences
The
following sequences are available for this feature:
protein sequence of Phvul.002G051300.1_Pv_G19833_v2.1 >Phvul.002G051300.1_Pv_G19833_v2.1 ID=Phvul.002G051300.1_Pv_G19833_v2.1; Name=Phvul.002G051300.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=187bp
MNALASQCSSGCESGWTLYLDHSFQLKNHNTFSHASSQLIGEDYKDKKAK
KEEADEEDLSMVSDASSGPPHLPEAQDDASFYSASNSAKLGKRTRKRQKV
KQYQHLPSFLDDTASSLVFDFSMNNVTVTNHQTSTESMLNCSQGFSATYF
EERSSLQDHFGFLEPSLSENGVENNKWYGGKEMGMI* back to topmRNA from alignment at Chr02:4721384..4722822- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Phvul.002G051300.1_Pv_G19833_v2.1 ID=Phvul.002G051300.1_Pv_G19833_v2.1; Name=Phvul.002G051300.1; organism=Phaseolus vulgaris; type=mRNA; length=1439bp; location=Sequence derived from: Chr02:4721384..4722822- (Phaseolus vulgaris
TATGGGAGGAGAATCAGGACAAAACTAGTCTAGGATTTGAGTCCGATTCT
CTTGGTTTTCTCCAACACTTTATCCAACTTGTTGCTGACCCCAAACCAAA
ACTATAGAGCCACGTTGCCACGCAGTTAATAATAGGCTACACCATGTAGT
GCCATGTTTCATCAATGTTTGTTTAACCCTCTCTCTCTCTTTTTATCCTT
TTTACCACTTCTCTCTTCATCATAAATTGGACTCTCCTTCATAGTAGTGA
GTAACCAACCCACCCCTCTTGGATTTCATTACTTTGGGAACCTGCAGCAG
CACCCAAAGAAAGGAAGATGAATGCATTGGCATCACAATGCAGCAGTGGG
TGTGAGTCTGGTTGGACTCTATACCTGGACCACTCTTTCCAGCTGAAGAA
CCACAATACCTTCTCACATGCAAGTTCTCAGTTGATTGGTGAAGATTACA
AAGACAAGAAAGCCAAAAAGGAGGAGGCTGACGAAGAGGATCTGTCCATG
GTCTCTGATGCTTCTTCTGGGCCTCCACACTTGCCAGAAGCACAGGATGA
TGCCAGTTTTTACTCTGCATCTAATTCAGCAAAACTTGGCAAGAGAACTA
GAAAGAGGCAGAAGGTTAAGCAATACCAACACCTACCTTCTTTTCTTGAT
GACACTGCTAGCTCTCTTGTCTTTGATTTCTCCATGGTGAGTCTTTAATT
GCATTCATCTCATTTTTCTAGTACTAAAAATAATCATGTGTTGTAGTTGT
AGTTGTAGTTGTATACTATATAGATGATATTTTCTTTGCTCTTGATAATT
TTTCAGAACAATGTCACAGTGACCAACCACCAAACTTCCACAGAGAGCAT
GCTAAATTGCTCACAAGGTTTCTCTGCTACTTATTTTGAGGTACTTCACT
GGCCTGATTCTTTCTTTCAAGGTTACATTTTATCCCAACTCATAAAATAT
TCGTGTTCTTATAGGAGAGATCCTCGTTGCAAGACCACTTCGGCTTTTTA
GAACCATCCCTATCAGAAAATGGAGTTGAAAACAACAAGTAAGCAAATGC
TTGTTCTGCACACTGGCCAATCTTTTTGACTGTATCCCCCAGAAGTATTT
TAATTTATCATGTGGCCATTCCACTGCATTGTGTTCTTAACAGATGGTAT
GGAGGGAAAGAGATGGGAATGATATAAAGATCAGTTCTGTTTCTACTAAT
AGCTATCTCTGCTATTCAACAAAGATACTGAAGATCCATGAAGGGCATAG
AATCATTGATGATGTAGAAGGAAGCTGACCACAAAAGGGATTCTGTTCCT
TTGTTTTCCTTTATCCTATATTTTAGCTGTCAATGCAGTGATAAACAACC
TGAAACGGAAATTTAGAAATAAACCTGTTTTTTTTTTTCATTTTCTTTGA
TAATTTAGTTTTCTTGTCAAAGAATAGTTCACACAAGAC back to topCoding sequence (CDS) from alignment at Chr02:4721384..4722822- >Phvul.002G051300.1_Pv_G19833_v2.1 ID=Phvul.002G051300.1_Pv_G19833_v2.1; Name=Phvul.002G051300.1; organism=Phaseolus vulgaris; type=CDS; length=561bp; location=Sequence derived from: Chr02:4721384..4722822- (Phaseolus vulgaris
ATGAATGCATTGGCATCACAATGCAGCAGTGGGTGTGAGTCTGGTTGGAC
TCTATACCTGGACCACTCTTTCCAGCTGAAGAACCACAATACCTTCTCAC
ATGCAAGTTCTCAGTTGATTGGTGAAGATTACAAAGACAAGAAAGCCAAA
AAGGAGGAGGCTGACGAAGAGGATCTGTCCATGGTCTCTGATGCTTCTTC
TGGGCCTCCACACTTGCCAGAAGCACAGGATGATGCCAGTTTTTACTCTG
CATCTAATTCAGCAAAACTTGGCAAGAGAACTAGAAAGAGGCAGAAGGTT
AAGCAATACCAACACCTACCTTCTTTTCTTGATGACACTGCTAGCTCTCT
TGTCTTTGATTTCTCCATGAACAATGTCACAGTGACCAACCACCAAACTT
CCACAGAGAGCATGCTAAATTGCTCACAAGGTTTCTCTGCTACTTATTTT
GAGGAGAGATCCTCGTTGCAAGACCACTTCGGCTTTTTAGAACCATCCCT
ATCAGAAAATGGAGTTGAAAACAACAAATGGTATGGAGGGAAAGAGATGG
GAATGATATAA back to top
|
