Phvul.002G174200.1

Transcript Overview
NamePhvul.002G174200.1
Unique NamePhvul.002G174200.1_Pv_G19833_v2.1
TypemRNA
OrganismPhaseolus vulgaris (Common bean)
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr02supercontigChr02:33173791..33177832 +Phaseolus vulgaris G19833 genome v2.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Phaseolus vulgaris G19833 genome v2.12019-09-17
InterProScan: Phaseolus vulgaris G19833 genome v2.12019-10-18
BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot2019-10-18
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
pspvL444Pisum sativum Cameor genome v1aPisum sativum
pvvuR203Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pvvuR237Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pspvL764Pisum sativum Cameor genome v1aPisum sativum
caipvL0562Cicer arietinum ICC 4958 genome v2Cicer arietinum
capvL437Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
capvL578Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccpvL0019Cajanus cajan Asha genome v1.0Cajanus cajan
ccpvL0261Cajanus cajan Asha genome v1.0Cajanus cajan
anpvL0035Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0264Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0851Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
aspvL028Vigna angularis Jingnong 6 genome v1.1Vigna angularis
pvzwsR244Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvzwsR254Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvvfhR258Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvtifR253Vicia faba cv. Tiffany genome v1.0Vicia faba
pvvrvR215Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvuaR178Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvuaR222Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvssR287Vicia sativa cv. Studenica genome v1.0Vicia sativa
pvvssR317Vicia sativa cv. Studenica genome v1.0Vicia sativa
canpvL411Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canpvL556Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjpvL248Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjpvL491Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carpvL425Cicer arietinum
carpvL555Cicer arietinum
ccapvL032Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapvL805Cajanus cajan cv. Asha genome v2.0Cajanus cajan
pvvumR243Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvvaR288Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvvaR305Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvasR248Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvstR247Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvvasR320Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvstR316Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvpvfR187Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR196Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvvunR188Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
pvvunR220Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
Cc_v2.0_22030.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Ca_11339Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
rna-TanjilR_33004Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
XM_058875813.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Ca_20473Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Vum_01G01580.1Vigna umbellata FF25 genome v1.0Vigna umbellata
rna-XM_014637739.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Va01G040200.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
rna-KK1_025149Cajanus cajan Asha genome v1.0Cajanus cajan
jg30417.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Psat5g095240.1Pisum sativum Cameor genome v1aPisum sativum
Psat07G0196800-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Vfaba.Tiffany.R1.2g091720.1Vicia faba cv. Tiffany genome v1.0Vicia faba
rna-TanjilR_09118Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vfaba.Hedin2.R1.2g111640.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Cc_v2.0_00093.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
evm.model.Chr01.2315Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
rna-TanjilR_07598Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vigan.01G203100.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Vigun01g246400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Vigan.04G428100.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
XM_058925627.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Vigun03g168400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Vigst.04G289300.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
jg53558.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Psat05G0287900-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Vigun03g168400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vigun01g246400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Ca_13717.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
rna-KK1_019880Cajanus cajan Asha genome v1.0Cajanus cajan
evm.model.Chr03.3732Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Va03G085200.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
rna-XM_004502245.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Vigst.01G143100.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
PvulFLAVERTChr01.1001749Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
PvulFLAVERTChr02.982Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Phvul.002G174200Phvul.002G174200_Pv_G19833_v2.1Phaseolus vulgarisgene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.002G174200.1.v2.1.five_prime_UTR.1Phvul.002G174200.1.v2.1.five_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgarisfive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.002G174200.1.v2.1.CDS.1Phvul.002G174200.1.v2.1.CDS.1_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.002G174200.1.v2.1.CDS.2Phvul.002G174200.1.v2.1.CDS.2_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.002G174200.1.v2.1.CDS.3Phvul.002G174200.1.v2.1.CDS.3_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.002G174200.1.v2.1.CDS.4Phvul.002G174200.1.v2.1.CDS.4_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.002G174200.1.v2.1.CDS.5Phvul.002G174200.1.v2.1.CDS.5_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.002G174200.1.v2.1.CDS.6Phvul.002G174200.1.v2.1.CDS.6_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.002G174200.1.v2.1.CDS.7Phvul.002G174200.1.v2.1.CDS.7_Pv_G19833_v2.1Phaseolus vulgarisCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.002G174200.1.v2.1.three_prime_UTR.1Phvul.002G174200.1.v2.1.three_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgaristhree_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Phvul.002G174200.1Phvul.002G174200.1_Pv_G19833_v2.1-proteinPhaseolus vulgarispolypeptide
Phvul.002G174200.1_Pv_G19833_v2.1Phvul.002G174200.1_Pv_G19833_v2.1Phaseolus vulgarispolypeptide


Homology
[Close]
BLAST of Phvul.002G174200.1 vs. DB:Swiss
Match: RL172_ARATH (60S ribosomal protein L17-2 OS=Arabidopsis thaliana OX=3702 GN=RPL17B PE=2 SV=2)

HSP 1 Score: 325.479 bits (833), Expect = 1.803e-114
Identity = 155/175 (88.57%), Postives = 166/175 (94.86%), Query Frame = 1 
Query:    1 MVKYSREPNNPTKSCKARGADLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKSRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVRKEPETNLAT-SKKSQA 522
            MVKYS+EP+N TKSCKARG+DLRVHFKNTRETA AIRKLPL+KAKRYLEDV+AHKQAIPF RFCRGVGRTAQAK+RHSNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVDAL+ISHIQVNQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPV+KEPET LA  SKKS A
Sbjct:    1 MVKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLAAKSKKSAA 175
[Close]
BLAST of Phvul.002G174200.1 vs. DB:Swiss
Match: RL171_ARATH (60S ribosomal protein L17-1 OS=Arabidopsis thaliana OX=3702 GN=RPL17A PE=2 SV=1)

HSP 1 Score: 322.783 bits (826), Expect = 2.131e-113
Identity = 156/181 (86.19%), Postives = 165/181 (91.16%), Query Frame = 1 
Query:    1 MVKYSREPNNPTKSCKARGADLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKSRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVRKEPETNLATSKKSQALRSGASS 543
            MVKYS+EP+N TKSCKARGADLRVHFKNTRETA AIRKLPL KAKRYLEDV+AHKQAIPF RFCRGVGRTAQAK+RHSNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVDAL+ISHIQVNQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPV+KEPET LA   K      GASS
Sbjct:    1 MVKYSQEPDNITKSCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLAAKSK-----KGASS 176
[Close]
BLAST of Phvul.002G174200.1 vs. DB:Swiss
Match: RL17_MAIZE (60S ribosomal protein L17 OS=Zea mays OX=4577 GN=RPL17 PE=2 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 6.997e-110
Identity = 148/171 (86.55%), Postives = 159/171 (92.98%), Query Frame = 1 
Query:    1 MVKYSREPNNPTKSCKARGADLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKSRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVRKEPETNLATSKK 513
            MVKYS+EP NPTKS KA G DLRVHFKNTRETAFA+RKLPL KAKRYLEDV+AHKQAIPFRR+C GVGRTAQAKSRHSNGQGRWPVKSA+FILDLLKNAESNA+VKGLDVD LY+SHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPV+KE +  +A  K+
Sbjct:    1 MVKYSQEPGNPTKSAKAMGRDLRVHFKNTRETAFALRKLPLTKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQAKSRHSNGQGRWPVKSARFILDLLKNAESNADVKGLDVDNLYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEADNIVAARKQ 171
[Close]
BLAST of Phvul.002G174200.1 vs. DB:Swiss
Match: RL171_HORVU (60S ribosomal protein L17-1 OS=Hordeum vulgare OX=4513 PE=2 SV=1)

HSP 1 Score: 307.76 bits (787), Expect = 1.558e-107
Identity = 145/167 (86.83%), Postives = 156/167 (93.41%), Query Frame = 1 
Query:    1 MVKYSREPNNPTKSCKARGADLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKSRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVRKEPETNLA 501
            MVKYS +P NPTKS KA G DLRVHFKNTRETAFA+RK+PL KAKRYLEDVLAHKQAIPFRR+CRGVGRTAQ K+R  NGQGRWP KSAKF+LDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMS+PCHIELILSEKEEPV+KE E+++A
Sbjct:    1 MVKYSTDPANPTKSAKAMGRDLRVHFKNTRETAFALRKMPLNKAKRYLEDVLAHKQAIPFRRYCRGVGRTAQVKNRQPNGQGRWPAKSAKFVLDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEAESHIA 167
[Close]
BLAST of Phvul.002G174200.1 vs. DB:Swiss
Match: RL172_HORVU (60S ribosomal protein L17-2 OS=Hordeum vulgare OX=4513 PE=2 SV=1)

HSP 1 Score: 302.368 bits (773), Expect = 2.427e-105
Identity = 143/170 (84.12%), Postives = 156/170 (91.76%), Query Frame = 1 
Query:    1 MVKYSREPNNPTKSCKARGADLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKSRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVRKEPETNLATSK 510
            MVKYSR+P+NPTKS KA G DLRVHFKNTRETAFA+R++PL KAKRYLEDVLAHKQAIPFRR+CRGVGRTAQ K+R  NGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD LYISHIQVNQAQKQRRRTYRAHGRINPYMS+PCHIELILSEKEEPV+KE +  +A  K
Sbjct:    1 MVKYSRDPSNPTKSAKACGKDLRVHFKNTRETAFALRRMPLGKAKRYLEDVLAHKQAIPFRRYCRGVGRTAQVKNRQPNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDNLYISHIQVNQAQKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEADNVVAPRK 170
[Close]
BLAST of Phvul.002G174200.1 vs. DB:Swiss
Match: RL17_PODCA (60S ribosomal protein L17 OS=Podocoryna carnea OX=6096 GN=RPL17 PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 3.066e-80
Identity = 117/158 (74.05%), Postives = 134/158 (84.81%), Query Frame = 1 
Query:    1 MVKYSREPNNPTKSCKARGADLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKSRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPV 474
            M KYS +P NP KSCKARG+ LRVHFKNTRETA AI+K+ + KA RYL+DV+A KQ IPFRRFC GVGR AQAK+   + QGRWPVKSA+F+L LLKNAESNA+VKGLDVD+L I HIQVN+A   RRRTYRAHGRINPYMSSPCHIE+I+SEKE+ V
Sbjct:    1 MGKYSIDPENPIKSCKARGSYLRVHFKNTRETAQAIKKMHIRKAYRYLKDVIAKKQIIPFRRFCGGVGRKAQAKA-FKHTQGRWPVKSAEFLLGLLKNAESNADVKGLDVDSLVIDHIQVNRAPYMRRRTYRAHGRINPYMSSPCHIEMIVSEKEQVV 157
[Close]
BLAST of Phvul.002G174200.1 vs. DB:Swiss
Match: RL17_HUMAN (60S ribosomal protein L17 OS=Homo sapiens OX=9606 GN=RPL17 PE=1 SV=3)

HSP 1 Score: 231.106 bits (588), Expect = 5.018e-77
Identity = 114/167 (68.26%), Postives = 137/167 (82.04%), Query Frame = 1 
Query:    1 MVKYSREPNNPTKSCKARGADLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKSRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVRKEPETNLA 501
            MV+YS +P NPTKSCK+RG++LRVHFKNTRETA AI+ + + KA +YL+DV   KQ +PFRR+  GVGR AQAK +    QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+IL+EKE+ V K PE  +A
Sbjct:    1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAK-QWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPK-PEEEVA 165
[Close]
BLAST of Phvul.002G174200.1 vs. DB:Swiss
Match: RL17_FELCA (60S ribosomal protein L17 OS=Felis catus OX=9685 GN=RPL17 PE=2 SV=3)

HSP 1 Score: 231.106 bits (588), Expect = 5.018e-77
Identity = 114/167 (68.26%), Postives = 137/167 (82.04%), Query Frame = 1 
Query:    1 MVKYSREPNNPTKSCKARGADLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKSRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVRKEPETNLA 501
            MV+YS +P NPTKSCK+RG++LRVHFKNTRETA AI+ + + KA +YL+DV   KQ +PFRR+  GVGR AQAK +    QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+IL+EKE+ V K PE  +A
Sbjct:    1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAK-QWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPK-PEEEVA 165
[Close]
BLAST of Phvul.002G174200.1 vs. DB:Swiss
Match: RL17_RAT (60S ribosomal protein L17 OS=Rattus norvegicus OX=10116 GN=Rpl17 PE=2 SV=3)

HSP 1 Score: 230.72 bits (587), Expect = 9.161e-77
Identity = 114/167 (68.26%), Postives = 137/167 (82.04%), Query Frame = 1 
Query:    1 MVKYSREPNNPTKSCKARGADLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKSRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVRKEPETNLA 501
            MV+YS +P NPTKSCK+RG++LRVHFKNTRETA AI+ + + KA +YL+DV   KQ +PFRR+  GVGR AQAK +    QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+IL+EKE+ V K PE  +A
Sbjct:    1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAK-QWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPK-PEEEVA 165
[Close]
BLAST of Phvul.002G174200.1 vs. DB:Swiss
Match: RL17_BOVIN (60S ribosomal protein L17 OS=Bos taurus OX=9913 GN=RPL17 PE=2 SV=3)

HSP 1 Score: 230.72 bits (587), Expect = 9.161e-77
Identity = 114/167 (68.26%), Postives = 137/167 (82.04%), Query Frame = 1 
Query:    1 MVKYSREPNNPTKSCKARGADLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKSRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVRKEPETNLA 501
            MV+YS +P NPTKSCK+RG++LRVHFKNTRETA AI+ + + KA +YL+DV   KQ +PFRR+  GVGR AQAK +    QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+IL+EKE+ V K PE  +A
Sbjct:    1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAK-QWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPK-PEEEVA 165
The following BLAST results are available for this feature:
BLAST of Phvul.002G174200.1 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
RL172_ARATH1.803e-11488.5760S ribosomal protein L17-2 OS=Arabidopsis thalian... [more]
RL171_ARATH2.131e-11386.1960S ribosomal protein L17-1 OS=Arabidopsis thalian... [more]
RL17_MAIZE6.997e-11086.5560S ribosomal protein L17 OS=Zea mays OX=4577 GN=R... [more]
RL171_HORVU1.558e-10786.8360S ribosomal protein L17-1 OS=Hordeum vulgare OX=... [more]
RL172_HORVU2.427e-10584.1260S ribosomal protein L17-2 OS=Hordeum vulgare OX=... [more]
RL17_PODCA3.066e-8074.0560S ribosomal protein L17 OS=Podocoryna carnea OX=... [more]
RL17_HUMAN5.018e-7768.2660S ribosomal protein L17 OS=Homo sapiens OX=9606 ... [more]
RL17_FELCA5.018e-7768.2660S ribosomal protein L17 OS=Felis catus OX=9685 G... [more]
RL17_RAT9.161e-7768.2660S ribosomal protein L17 OS=Rattus norvegicus OX=... [more]
RL17_BOVIN9.161e-7768.2660S ribosomal protein L17 OS=Bos taurus OX=9913 GN... [more]
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InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001063Ribosomal protein L22/L17PFAMPF00237Ribosomal_L22coord: 17..152
e-value: 5.4E-42
score: 142.2
IPR001063Ribosomal protein L22/L17CDDcd00336Ribosomal_L22coord: 15..151
e-value: 1.41247E-36
score: 120.673
IPR036394Ribosomal protein L22/L17 superfamilyGENE3D3.90.470.10coord: 1..180
e-value: 1.5E-78
score: 264.7
IPR036394Ribosomal protein L22/L17 superfamilySUPERFAMILY54843Ribosomal protein L22coord: 1..154
IPR005721Ribosomal protein L22/L17, eukaryotic/archaealTIGRFAMTIGR01038TIGR01038coord: 4..154
e-value: 9.8E-61
score: 202.0
IPR005721Ribosomal protein L22/L17, eukaryotic/archaealHAMAPMF_01331_ARibosomal_L22_Acoord: 2..154
score: 24.514
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 167..181
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 153..181
IPR018260Ribosomal protein L22/L17, conserved sitePROSITEPS00464RIBOSOMAL_L22coord: 127..151

Sequences
The following sequences are available for this feature:

protein sequence of Phvul.002G174200.1_Pv_G19833_v2.1

>Phvul.002G174200.1_Pv_G19833_v2.1 ID=Phvul.002G174200.1_Pv_G19833_v2.1; Name=Phvul.002G174200.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=182bp
MVKYSREPNNPTKSCKARGADLRVHFKNTRETAFAIRKLPLVKAKRYLED
VLAHKQAIPFRRFCRGVGRTAQAKSRHSNGQGRWPVKSAKFILDLLKNAE
SNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELI
LSEKEEPVRKEPETNLATSKKSQALRSGASS*
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mRNA from alignment at Chr02:33173791..33177832+

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Phvul.002G174200.1_Pv_G19833_v2.1 ID=Phvul.002G174200.1_Pv_G19833_v2.1; Name=Phvul.002G174200.1; organism=Phaseolus vulgaris; type=mRNA; length=4042bp; location=Sequence derived from: Chr02:33173791..33177832+ (Phaseolus vulgaris
GAAATACATGTTGGACCTCATCGCTCCCACCTTACATGATATGGCGACGG
AACTAGGGTTTTAAACCCTACTATATAAACTCCCTGGTACCTCATTCTTC
TCTTGCCGTGAGCCAATTCTTTGTTTGAATTGTGAAGGTGTCGAATTAAG
CAGCAATGGTATGAACTATTCACTTCTTCTACTCACTTCACCTGCTTAGT
AGAATTCGCTTGGTGTCAGATCTGTGATCTCTTTTCATTTCCAATTCACA
GTGTAACTAATACTACTATCCTTTTATTGTTTTTATTCACAGGTGAAGTA
TTCAAGGGAGCCAAACAATCCTACTAAGTGTAAGTCCCATTATTGTAGAA
TTCGTGAGTATTTCATTAGCTTCTAAAACGATGGCATTTAAGTTCTAAAT
TTGGGCATTTTTATCGTTTTTGACATGTAGCGTGCAAGGCTAGAGGCGCC
GACCTTAGGGTTCATTTCAAGGTACCTGATCCTGCTACTTTGGTTACCAT
TCTGTGTTATTTTTGTCGATTTCAGGAATCATTTTTTTTCAGTTAATGTT
ATAATATTTGAACCTTTTTTTTGGCATACTATTGATTTGCATACACTGAT
ATGTTTTAATTGATTAATGAAAATATGGAAGTACAGTAATAAATCCTGAT
GATAAAAGCATGGACATGTTTGACCTTTGTTATCATGTCCTTCGTAGTGC
CCCCTTTGTTGTTGGGTGAAGCTGTCTTGTTCATGATTCAAGGTTCAGTA
AATGTTGAAAATTTTTACACTTTTAATGCACAATATTATTGCAATTCGTG
TTAAGAGAGTCGTGTTAGTTCCTTTGTTATTAATTACTATTTGTTTATTA
TATTGGTTTTAAAGGGCTATGCAACTGGAAGTGCTTTTTTATTTATTTAT
AAGTACCGGATGAAAAATTGTATGAGTGTTGCCTGTGTGAGTACGCCTAT
TGTAACCTTTCAGTGGTATAATAACCATTGTTATTAAGTGAACATCTTTT
CTCTGTTTGTGGCTAACTCTTCAGTAGAAGATAGAACACTTCGGAAAAAA
AATCTGTTGAAAACGTTTATAACATGTTGAACTAACCTGATGAAAAAAGC
AGGGGCATGTTGCCTCTGTGATCATGCCTCTCGTAACCTTCAGGGATATA
ATAATCATTGTTATTGGGTGAATCTATGTTCTCTTTTTTGTGACTGATGG
TTCAGTAAATGATGGAACACTTCCGAGAAAACCAGTTGAAGATATTTATG
ACAAAACATGTTGAATTAACCTGATGAAAAAAGCAGGGGCATGTTGCCTC
TGTGAGCATGCCTCTCGTAACCTTCAGGGATATAATAACCATTGTTATTG
GGTGAATCTATGTTCTCTTTTTGTGACTGATGGTTCAGTAAATGATGGAA
CACTTTGAGAAAACCTGTTTAAGATATTTATGTCAAAACATGTTGTATTA
ACCTGATGAAAAAAGCAGGGGCATGTTGCCTCTGTGAGCATGCCTCTCGT
AACCTTCAGGGATATAATAATCATTGTTATTGGGTGAATCTATGTTTTCT
TTTTGTGACTGATGGTTCAGTAAATGATGGAACACTTTGAGAAAACCTGT
TTAAGATATTTATGTCAAAACATGTTGTATTAACCTGATGAAAAAAGCAG
GGGCATGTTGCCTCTGTGAGCATGCCTCTCGTAACCTTCAGGGATATAAT
AATCATTGTTATTGGGTGAATCTATGTTTTCTTTTTGTGACTGATGGTTC
AGTAAATGATGGAACACTTCGAGAAAACCTGTTTAAGATATTTATGACAA
AACATGTTGAATTAACCTGATGAAAAAAGCAGGGGCATGTTGCCTCTGTG
AGCATGCCTCTCGTAACCTTCAGGGATATAATAATCATTGTTATTGGGTG
AATCTATGTTTTCTTTTTGTGACTGATGGTTCAGTAAATGATGGAACACT
TTGAGAAAACCTGTTTAAGATATTTATGTCAAAACATGTTGTATTAACCT
GATGAAAAAAGCAGGGGCATGTTGCCTCTGTGAGCATGCCTCTCGTAACC
TTCAGGGATATAATAATCATTGTTATTGGGTGAATCTATGTTTTCTTTTT
GTGACTGATGGTTCAGTAAATGATGGAACACTTCGAGAAAACCTGTTTAA
GATATTTATGACAAAACATGTTGAATTAACCTGATGAAAAAAGCAGGGGC
ATGTTGCCTCTGTGAGCATGCCTCTCGTAACCTTCAGGGATATAATAATC
ATTGTTATTGGGTGAATCTATGTTCTCTTTTTGTGACTGATGGTTCAGTA
AATGATGGAACACTTTGAGAAAACCTGTTTAAGATATTTATGTCAAAACA
TGTTGTATTAATCTGATGAAAAAAGCAGGGGCATGTTGCCTCTGTGAGCA
TGCCTCTCGTAACCTTCAGGGATATAATAATCATTGTTATTGGGTGAATC
TATGTTTTCTTTTTGTGACTGATGGTTCAGTAAATGATGGAACACAGTGC
TTTTGTTGCACCATGAATTTGATTTAAGATTTGTCTGTTCTGATGTAAAG
ATGTCTTAACTGTTTTCGTGTTAAAAATGGTTTTCGGTTGTTTTAAGGGA
AGTGCTTAGTGAATATCTTCCTCTGTGACATATCTGTGGTTGATTTCATG
TTTTATGTTGTAAAATTTATTTTTGGTTTTTCTATGTGAACTTATTTTCT
TTAATATATAGTTAGGACACATTTATATTAAGTGAGCAGTTGGGTGAAAA
AAGTAGTGGTCTGCTGCCTTTGTAGGCAGTTCTCTTTTTGTGACTTCAGG
TTCTGTAAAGGATGGAACATGATTTTTCATTAATAGTTACCAATTTTGTT
TAATTGCCACAGTACATTTTGGTAGAGGATGTTGCAATCGACATCTAATA
ATATGGCTGTATTTAAAATTTGTGTCTTGTTAACAGATAAAAAACTGTAT
TTCTACGTTGTTGCAATTTTTATCATATTATTCTCCTTTTAATAACCATT
ATTGTTGGTTAACTTCTGTTACATGTTTGTAACTTTGCCTTTTATATTGT
ACTTGCAGAACACTAGGGAAACTGCGTTTGCAATTAGGAAGTTGCCCTTG
GTTAAGGCTAAAAGGTACTTGGAAGATGTTCTTGCCCACAAACAGGCCAT
TCCATTCAGACGTTTCTGTCGTGGTGTTGGAAGGACAGCCCAAGCAAAGA
GTAGACACTCTAATGGCCAAGGAAGGTGGCCTGTCAAATCAGCAAAATTC
ATCCTTGATTTGCTTAAAAATGCCGAGAGCAATGCTGAAGTATGTATATA
CTCTATTTTGCTTTTTCATGAGCATTTTATGTGACTGTCTCCGAAATTGT
TTTACTGAAAATTGCTTAATTTCAGGTGAAAGGTTTGGATGTTGATGCGC
TTTACATTTCCCATATCCAAGTCAATCAAGCGCAAAAGCAAAGACGCCGA
ACATACCGAGCCCATGGAAGAATCAATCGTACGTTCAAATATTTAACATT
TTGTTTTAATTGTTTGATATGTTTTACACAATTTTATTTATGGGGACTGT
TTTTGCAGCTTATATGTCATCCCCGTGCCACATAGAATTGATATTGTCGG
AAAAGGAAGAACCCGTAAGGAAGGAGGTATTGGATTCATCTGTTTGCTAA
GTATTCATCTTTTGCTGTTTTTGTTTTCTTTTTTCGATGATTTATTATCT
GATTATTAATTCTTTTGTTCGTCCGTAGCCCGAGACAAATTTGGCAACAA
GCAAGAAGTCCCAAGCTCTACGAAGTGGTGCCTCTTCTTAGGTTTCATTG
GTTTTATTTTTCTGCTATTGCTTGATGAAGTTTCATACACTCTGTTTCAA
ATTAATTGTTTAATTGGAAAACTTCGTTTAGTATAGACTGCGTTTTTTCA
CTCGAATGGCTACTTGTTGTTTCTAAAGAAATACTAAATATTGAAAAACA
ATGTGGTATTATATTTTTTCTTCTTACTATTATACTTTGCGATTAATGAA
ACGATGAATCTTCAAAACATCTAAAGTAATTTAATTATTGTG
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Coding sequence (CDS) from alignment at Chr02:33173791..33177832+

>Phvul.002G174200.1_Pv_G19833_v2.1 ID=Phvul.002G174200.1_Pv_G19833_v2.1; Name=Phvul.002G174200.1; organism=Phaseolus vulgaris; type=CDS; length=546bp; location=Sequence derived from: Chr02:33173791..33177832+ (Phaseolus vulgaris
ATGGTGAAGTATTCAAGGGAGCCAAACAATCCTACTAAGTCGTGCAAGGC
TAGAGGCGCCGACCTTAGGGTTCATTTCAAGAACACTAGGGAAACTGCGT
TTGCAATTAGGAAGTTGCCCTTGGTTAAGGCTAAAAGGTACTTGGAAGAT
GTTCTTGCCCACAAACAGGCCATTCCATTCAGACGTTTCTGTCGTGGTGT
TGGAAGGACAGCCCAAGCAAAGAGTAGACACTCTAATGGCCAAGGAAGGT
GGCCTGTCAAATCAGCAAAATTCATCCTTGATTTGCTTAAAAATGCCGAG
AGCAATGCTGAAGTGAAAGGTTTGGATGTTGATGCGCTTTACATTTCCCA
TATCCAAGTCAATCAAGCGCAAAAGCAAAGACGCCGAACATACCGAGCCC
ATGGAAGAATCAATCCTTATATGTCATCCCCGTGCCACATAGAATTGATA
TTGTCGGAAAAGGAAGAACCCGTAAGGAAGGAGCCCGAGACAAATTTGGC
AACAAGCAAGAAGTCCCAAGCTCTACGAAGTGGTGCCTCTTCTTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR001063Ribosomal_uL22
IPR036394Ribosomal_uL22_sf
IPR005721Ribosomal_uL22_euk/arc
IPR018260Ribosomal_L22/L17_CS
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0015934large ribosomal subunit
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome