Phvul.002G175100.1

Transcript Overview
NamePhvul.002G175100.1
Unique NamePhvul.002G175100.1_Pv_G19833_v2.1
TypemRNA
OrganismPhaseolus vulgaris (Common bean)
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr02supercontigChr02:33300092..33301257 -Phaseolus vulgaris G19833 genome v2.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Phaseolus vulgaris G19833 genome v2.12019-09-17
InterProScan: Phaseolus vulgaris G19833 genome v2.12019-10-18
BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot2019-10-18
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
pvpvL004Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pspvL444Pisum sativum Cameor genome v1aPisum sativum
pvvuR203Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pvvuR237Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pspvL764Pisum sativum Cameor genome v1aPisum sativum
caipvL0562Cicer arietinum ICC 4958 genome v2Cicer arietinum
caipvL0755Cicer arietinum ICC 4958 genome v2Cicer arietinum
crpvL504Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
capvL437Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
crpvL927Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
capvL578Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccpvL0019Cajanus cajan Asha genome v1.0Cajanus cajan
ccpvL0261Cajanus cajan Asha genome v1.0Cajanus cajan
anpvL0035Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0264Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0851Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
aspvL028Vigna angularis Jingnong 6 genome v1.1Vigna angularis
pvzwsR244Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvzwsR254Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvvfhR258Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvvfhR299Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvtifR253Vicia faba cv. Tiffany genome v1.0Vicia faba
pvtifR295Vicia faba cv. Tiffany genome v1.0Vicia faba
pvvrvR215Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvrvR237Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvuaR178Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvuaR222Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvssR287Vicia sativa cv. Studenica genome v1.0Vicia sativa
pvvssR317Vicia sativa cv. Studenica genome v1.0Vicia sativa
canpvL411Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canpvL556Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjpvL248Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjpvL491Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carpvL425Cicer arietinum
carpvL555Cicer arietinum
ccapvL032Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapvL805Cajanus cajan cv. Asha genome v2.0Cajanus cajan
pvvvaR288Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvvaR305Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvasR248Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvstR247Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvvasR320Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvstR316Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvpvfR187Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR196Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvvunR188Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
pvvunR220Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
Va01G038900.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
rna-XM_014650913.1Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Psat07G0198300-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Vigun03g169400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
LR48_mrnaVigan01g094900Vigna angularis Jingnong 6 genome v1.1Vigna angularis
jg30396.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Cc_v2.0_22023.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Vigun03g169400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Psat7g078480.1Pisum sativum Cameor genome v1aPisum sativum
XM_058875824.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
evm.model.Chr03.3722Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vigan.01G199500.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Cr_21881.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
rna-KK1_025164Cajanus cajan Asha genome v1.0Cajanus cajan
Ca_20481Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Vigst.01G142400.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Vfaba.Tiffany.R1.6g045840.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Vfaba.Hedin2.R1.6g055080.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
rna-TanjilR_09113Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Ca_16305.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
rna-XM_004504407.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
PvulFLAVERTChr02.1001025Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Phvul.002G175100Phvul.002G175100_Pv_G19833_v2.1Phaseolus vulgarisgene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.002G175100.1.v2.1.CDS.2Phvul.002G175100.1.v2.1.CDS.2_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.002G175100.1.v2.1.CDS.1Phvul.002G175100.1.v2.1.CDS.1_Pv_G19833_v2.1Phaseolus vulgarisCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Phvul.002G175100.1Phvul.002G175100.1_Pv_G19833_v2.1-proteinPhaseolus vulgarispolypeptide
Phvul.002G175100.1_Pv_G19833_v2.1Phvul.002G175100.1_Pv_G19833_v2.1Phaseolus vulgarispolypeptide


Homology
The following BLAST results are available for this feature:
BLAST of Phvul.002G175100.1 vs.
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 218..263

Sequences
The following sequences are available for this feature:

protein sequence of Phvul.002G175100.1_Pv_G19833_v2.1

>Phvul.002G175100.1_Pv_G19833_v2.1 ID=Phvul.002G175100.1_Pv_G19833_v2.1; Name=Phvul.002G175100.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=290bp
MDMPPLNFLCHPKAKETARMNSSRHRPLHTCGVSFLAIVDIVMGKTQHIN
GHLGSTLKRVTKLAKFAVLLIYAMQIQWLTILSFIDDAILAIEKVTEKLF
PPSTRVFDKVDEVVVMMVSLPEKFEGAMNKFPTIIHEVPFLNWALTPVIS
RLNSLVSTLNHWGHKNSRSNEKTIGDRSYNEGYMDSLNDIENLEIFPPII
SECEYKGAHDTALRSHEKGSYKDVLERGKKENPEEKMEKGCEAEKVNGGD
DCECKEGREKNDGKYQVGESVKDALFELFESAWLMKAGS*
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mRNA from alignment at Chr02:33300092..33301257-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Phvul.002G175100.1_Pv_G19833_v2.1 ID=Phvul.002G175100.1_Pv_G19833_v2.1; Name=Phvul.002G175100.1; organism=Phaseolus vulgaris; type=mRNA; length=1166bp; location=Sequence derived from: Chr02:33300092..33301257- (Phaseolus vulgaris
ATGGATATGCCACCCCTCAATTTCCTTTGCCATGTGAGTTTCCAAGTTTC
TTTCATCATTTTCTTTCATTTGTGTAAATTACTTTTCTTTTTATCGCCAA
ATCAATGAGGTTAAATTATCTGCATCATCAATATCATTATTAGTTTGTCA
TTAATTGTTCTTTAACATGCCAAAATCCTCATTCTTGTTTACAATTCTAT
AAATAATGTATATGTCTGATTGCATTGAAATCTGCTACATGGATATGTAA
TGAAATTTAAACTTCGAATTCTACGCATGATATGATGACTCTATAATGTA
TTATTTTTTATGTTGTCTTTTTCATGAAGCCTAAAGCTAAGGAAACAGCA
AGAATGAATAGTTCAAGGCATCGTCCATTACACACTTGTGGAGTTTCCTT
CTTAGCCATTGTTGACATTGTCATGGGAAAAACCCAACATATCAATGGAC
ATTTAGGTTCAACGTTGAAAAGGGTAACGAAGTTAGCCAAATTCGCCGTG
CTCCTTATCTACGCCATGCAAATCCAATGGCTAACAATTCTCTCCTTCAT
CGATGATGCCATTCTAGCAATTGAAAAAGTTACAGAGAAACTGTTTCCCC
CTTCAACACGGGTGTTCGACAAAGTTGATGAAGTTGTGGTAATGATGGTG
TCCCTTCCTGAGAAATTTGAAGGAGCAATGAACAAGTTTCCCACAATAAT
CCATGAGGTCCCGTTTCTGAATTGGGCACTGACCCCTGTGATCTCAAGGT
TGAACAGTTTGGTCTCAACGTTGAACCATTGGGGACATAAAAATTCAAGG
TCGAACGAGAAAACAATAGGTGATAGGAGTTACAATGAAGGGTACATGGA
TTCCTTGAATGATATTGAGAATTTGGAAATATTTCCTCCTATAATATCAG
AGTGTGAATATAAAGGGGCTCATGACACTGCATTGCGGAGTCACGAAAAA
GGGTCATACAAGGATGTGTTGGAGAGAGGAAAAAAAGAGAACCCAGAGGA
GAAAATGGAAAAAGGGTGTGAGGCTGAGAAGGTGAATGGAGGTGATGATT
GTGAGTGCAAAGAAGGAAGAGAGAAGAATGATGGGAAATATCAAGTTGGA
GAAAGTGTGAAGGATGCCCTTTTCGAACTGTTTGAGTCTGCATGGCTCAT
GAAAGCTGGTAGTTAG
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Coding sequence (CDS) from alignment at Chr02:33300092..33301257-

>Phvul.002G175100.1_Pv_G19833_v2.1 ID=Phvul.002G175100.1_Pv_G19833_v2.1; Name=Phvul.002G175100.1; organism=Phaseolus vulgaris; type=CDS; length=870bp; location=Sequence derived from: Chr02:33300092..33301257- (Phaseolus vulgaris
ATGGATATGCCACCCCTCAATTTCCTTTGCCATCCTAAAGCTAAGGAAAC
AGCAAGAATGAATAGTTCAAGGCATCGTCCATTACACACTTGTGGAGTTT
CCTTCTTAGCCATTGTTGACATTGTCATGGGAAAAACCCAACATATCAAT
GGACATTTAGGTTCAACGTTGAAAAGGGTAACGAAGTTAGCCAAATTCGC
CGTGCTCCTTATCTACGCCATGCAAATCCAATGGCTAACAATTCTCTCCT
TCATCGATGATGCCATTCTAGCAATTGAAAAAGTTACAGAGAAACTGTTT
CCCCCTTCAACACGGGTGTTCGACAAAGTTGATGAAGTTGTGGTAATGAT
GGTGTCCCTTCCTGAGAAATTTGAAGGAGCAATGAACAAGTTTCCCACAA
TAATCCATGAGGTCCCGTTTCTGAATTGGGCACTGACCCCTGTGATCTCA
AGGTTGAACAGTTTGGTCTCAACGTTGAACCATTGGGGACATAAAAATTC
AAGGTCGAACGAGAAAACAATAGGTGATAGGAGTTACAATGAAGGGTACA
TGGATTCCTTGAATGATATTGAGAATTTGGAAATATTTCCTCCTATAATA
TCAGAGTGTGAATATAAAGGGGCTCATGACACTGCATTGCGGAGTCACGA
AAAAGGGTCATACAAGGATGTGTTGGAGAGAGGAAAAAAAGAGAACCCAG
AGGAGAAAATGGAAAAAGGGTGTGAGGCTGAGAAGGTGAATGGAGGTGAT
GATTGTGAGTGCAAAGAAGGAAGAGAGAAGAATGATGGGAAATATCAAGT
TGGAGAAAGTGTGAAGGATGCCCTTTTCGAACTGTTTGAGTCTGCATGGC
TCATGAAAGCTGGTAGTTAG
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