Phvul.002G312800.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Phvul.002G312800.1 vs. DB:Swiss
Match: PLSP1_ARATH (Chloroplast processing peptidase OS=Arabidopsis thaliana OX=3702 GN=PLSP1 PE=2 SV=2) HSP 1 Score: 343.969 bits (881), Expect = 3.352e-118 Identity = 176/263 (66.92%), Postives = 202/263 (76.81%), Query Frame = 1 Query: 43 NPNFTNPRLSNFINFP----FNSTRSFAPLSRRDFLCRAFRDSSEDTKAVLKXXXXXXXXXXXXXXXXRDAEKKEGPLPEWLNFTTDDAKTVLAAIAISLAFRTFVAEPRYIPSLSMYPTFDVGDRLVAEKVSYYFRKPCASDIVIFKSPPVLQEVGYSDDDVFIKRVVAKEGDIVEVRKGHLVVNGVERNEDYILEPPAYEMKPTRVPENYVFVMGDNRNNSYDSHVWGPLPSKNIIGRSVFRYWPPNRIAGTVSKDSCSIE 819 NPNF + + FP FN+ + L+RR C +DSSE TK+ D GG G G + E+K PEWL+FT+DDA+TV AIA+SLAFR F+AEPRYIPSLSMYPTFDVGDRLVAEKVSYYFRKPCA+DIVIFKSPPVLQEVGY+D DVFIKR+VAKEGD+VEV G L+VNGV RNE +ILEPP YEM P RVPEN VFVMGDNRNNSYDSHVWGPLP KNIIGRSVFRYWPPNR++GTV + C+++ Sbjct: 30 NPNFIQFTPKSQLLFPQRLNFNTGTN---LNRRTLSCYGIKDSSETTKSAPSLDSGDGGGGDGGDDDKGEVEEKNRLFPEWLDFTSDDAQTVFVAIAVSLAFRYFIAEPRYIPSLSMYPTFDVGDRLVAEKVSYYFRKPCANDIVIFKSPPVLQEVGYTDADVFIKRIVAKEGDLVEVHNGKLMVNGVARNEKFILEPPGYEMTPIRVPENSVFVMGDNRNNSYDSHVWGPLPLKNIIGRSVFRYWPPNRVSGTVLEGGCAVD 289
BLAST of Phvul.002G312800.1 vs. DB:Swiss
Match: TPP2_ARATH (Probable thylakoidal processing peptidase 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TPP2 PE=2 SV=1) HSP 1 Score: 238.039 bits (606), Expect = 1.343e-75 Identity = 112/180 (62.22%), Postives = 138/180 (76.67%), Query Frame = 1 Query: 274 LNFTTDDAKTVLAAIAISLAFRTFVAEPRYIPSLSMYPTFDVGDRLVAEKVSYYFRKPCASDIVIFKSPPVLQEVGYSDDDVFIKRVVAKEGDIVEVRKGHLVVNGVERNEDYILEPPAYEMKPTRVPENYVFVMGDNRNNSYDSHVWGPLPSKNIIGRSVFRYWPPNRIAGTVSKDSCS 813 LN ++DAK A+ +SL FR+ +AEP+ IPS SM PT DVGDR++AEKVSY+FRKP SDIVIFK+PP+L E GYS DVFIKR+VA EGD VEV G L+VN + ED++LEP YEM+P VPE YVFV+GDNRN S+DSH WGPLP KNIIGRSVFRYWPP++++ + + S Sbjct: 180 LNICSEDAKAAFTAVTVSLLFRSALAEPKSIPSTSMLPTLDVGDRVIAEKVSYFFRKPEVSDIVIFKAPPILVEHGYSCADVFIKRIVASEGDWVEVCDGKLLVNDTVQAEDFVLEPIDYEMEPMFVPEGYVFVLGDNRNKSFDSHNWGPLPIKNIIGRSVFRYWPPSKVSDIIHHEQVS 359
BLAST of Phvul.002G312800.1 vs. DB:Swiss
Match: TPP1_ARATH (Thylakoidal processing peptidase 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TPP1 PE=2 SV=2) HSP 1 Score: 234.187 bits (596), Expect = 1.903e-74 Identity = 110/188 (58.51%), Postives = 144/188 (76.60%), Query Frame = 1 Query: 256 GPLPEWLNFTTDDAKTVLAAIAISLAFRTFVAEPRYIPSLSMYPTFDVGDRLVAEKVSYYFRKPCASDIVIFKSPPVLQEV---GYSDDDVFIKRVVAKEGDIVEVRKGHLVVNGVERNEDYILEPPAYEMKPTRVPENYVFVMGDNRNNSYDSHVWGPLPSKNIIGRSVFRYWPPNRIAGTVSKDSC 810 G + + L+ ++DAK A+ +S+ FR+ +AEP+ IPS SMYPT D GDR++AEKVSY+FRKP SDIVIFK+PP+L E GYS +DVFIKR+VA EGD VEVR G L VN + + ED++LEP +YEM+P VP+ YVFV+GDNRN S+DSH WGPLP +NI+GRSVFRYWPP++++ T+ D Sbjct: 144 GWVNKLLSVCSEDAKAAFTAVTVSILFRSALAEPKSIPSTSMYPTLDKGDRVMAEKVSYFFRKPEVSDIVIFKAPPILLEYPEYGYSSNDVFIKRIVASEGDWVEVRDGKLFVNDIVQEEDFVLEPMSYEMEPMFVPKGYVFVLGDNRNKSFDSHNWGPLPIENIVGRSVFRYWPPSKVSDTIYHDQA 331
BLAST of Phvul.002G312800.1 vs. DB:Swiss
Match: LEP1_SYNY3 (Probable signal peptidase I-1 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=lepB1 PE=3 SV=1) HSP 1 Score: 175.252 bits (443), Expect = 3.601e-53 Identity = 90/177 (50.85%), Postives = 116/177 (65.54%), Query Frame = 1 Query: 250 KEGPLPEWLNFTTDDAKTVLAAIAISLAFRTFVAEPRYIPSLSMYPTFDVGDRLVAEKVSYYFRKPCASDIVIFKSPPVLQEVGYSDDDVFIKRVVAKEGDIVEVRKGHLVVNGVERNEDYILEPPAYEMKPTRVPENYVFVMGDNRNNSYDSHVWGPLPSKNIIGRSVFRYWPPNR 780 + P+P F ++ ++ A+ ++L R FVAEPRYIPS SM PT + GDRLV EKVSY+F P DI++F P +LQ GY FIKRV+A G VEV G + +G E+YILEPP Y + RVP+ VFVMGDNRNNS DSHVWG LP +NIIG ++FR++P +R Sbjct: 2 QNSPIPSPWQFIKENIPLLMVALVLALLLRFFVAEPRYIPSDSMLPTLEQGDRLVVEKVSYHFHPPQVGDIIVFHPPELLQVQGYDLGQAFIKRVIALPGQTVEVNNGIVYRDGQPLQEEYILEPPQYNLPAVRVPDGQVFVMGDNRNNSNDSHVWGFLPQQNIIGHALFRFFPASR 178
BLAST of Phvul.002G312800.1 vs. DB:Swiss
Match: LEP_PHOLA (Signal peptidase I OS=Phormidium laminosum OX=32059 GN=lepB PE=3 SV=1) HSP 1 Score: 172.17 bits (435), Expect = 5.924e-52 Identity = 79/166 (47.59%), Postives = 111/166 (66.87%), Query Frame = 1 Query: 289 DDAKTVLAAIAISLAFRTFVAEPRYIPSLSMYPTFDVGDRLVAEKVSYYFRKPCASDIVIFKSPPVLQEVGYSDDDVFIKRVVAKEGDIVEVRKGHLVVNGVERNEDYILEPPAYEMKPTRVPENYVFVMGDNRNNSYDSHVWGPLPSKNIIGRSVFRYWPPNRIA 786 + KT+ ++ ++L RTFVAE RYIPS SM PT +V DRL+ EK+SY+F P DI++F L++ S ++ FIKRV+ G+ V+V G +++NG E+YI PP Y+ P +VP + V+GDNRNNSYDSH WG +P +NIIGR+V R+WP NR+ Sbjct: 30 EGIKTIGLSVVLALGIRTFVAEARYIPSESMLPTLEVNDRLIVEKISYHFNPPRRGDIIVFHPTEALKQQNPSLNEAFIKRVIGLPGETVQVTGGRVLINGQPLEENYIQSPPDYQWGPEKVPADSFLVLGDNRNNSYDSHFWGYVPRQNIIGRAVVRFWPVNRLG 195
BLAST of Phvul.002G312800.1 vs. DB:Swiss
Match: LEP2_SYNY3 (Probable signal peptidase I-2 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=lepB2 PE=3 SV=1) HSP 1 Score: 168.703 bits (426), Expect = 2.256e-50 Identity = 89/205 (43.41%), Postives = 130/205 (63.41%), Query Frame = 1 Query: 241 AEKKEGPLPE--WLNFTTDDAKTVLAAIAISLAFRTFVAEPRYIPSLSMYPTFDVGDRLVAEKVSYYFRKPCASDIVIFKSPPVLQEVGYSDDDVFIKRVVAKEGDIVEVRKGHLVVNGVERNEDYILEPPAYEMKPTRVPENYVFVMGDNRNNSYDSHVWGPLPSKNIIGRSVFRYWPPNRIAGTVSKDS--CSIETTPENTET 843 ++KKE P PE WL KT++ A+ +++ RTFVAE RYIPS SM PT + DRL+ EK+SY R P +IV+F L+ + D FIKR++ GD V V +G++ VNG +E+YI PPAYE P +VP++ V+GDNRNNSYDSH WG +P + ++GR+ R+WP R+ G ++ D+ ++E +P+ E+ Sbjct: 10 SKKKESP-PENTWLEL----GKTMVTAVILAIGIRTFVAEARYIPSSSMEPTLQINDRLIIEKISYRLRDPERGEIVVFNPTDALKAKNFHD--AFIKRIIGLPGDEVRVSQGNVYVNGKMLDENYIAAPPAYEYGPVKVPDDQYLVLGDNRNNSYDSHYWGFVPREKLLGRAFVRFWPVPRV-GLLTDDAEREAVEISPQAWES 206
BLAST of Phvul.002G312800.1 vs. DB:Swiss
Match: LEP_MYCLE (Probable signal peptidase I OS=Mycobacterium leprae (strain TN) OX=272631 GN=lepB PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 1.091e-21 Identity = 75/228 (32.89%), Postives = 101/228 (44.30%), Query Frame = 1 Query: 304 VLAAIAISLAF--RTFVAEPRYIPSLSMYPTFD-----VGDRLVAEKVSYYFRKPCASDIVIFKSPP---------------------VLQEVGY--SDDDVFIKRVVAKEGDIVEVRK-GHLVVNG----------VERNEDYILEPP-AYEMKPTRVPENYVFVMGDNRNNSYDSHVW------------------GPLPSKNIIGRSVFRYWPPNRIAGTVSKDS 807 +LA IAI L + TFVA P IPS SM PT VGDR++ +K++Y F P D+++FK PP L VG+ D++ +KRV+A G V+ R L VNG V N D P E P VP+ ++VMGDNR +S DS G +P N+IG++ WPP+R G S +S Sbjct: 58 ILAVIAIGLYYVMLTFVARPYLIPSESMEPTLHGCSGCVGDRIMVDKITYRFSSPQPGDVIVFKGPPSWNTMYKSIRSNNIVLRSVQNALSFVGFVPPDENDLVKRVIAVGGQTVQCRSDTGLTVNGKPLKEPYLRPVTMNADLSFSPCLGSEFGPVTVPQGRLWVMGDNRIHSADSRYHCNSTDVVNGLSCTGDPNSGTVPVSNVIGKARVVVWPPSRWGGVGSVNS 285
BLAST of Phvul.002G312800.1 vs. DB:Swiss
Match: LEP_MYCTU (Signal peptidase I OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=lepB PE=1 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 1.136e-21 Identity = 74/213 (34.74%), Postives = 97/213 (45.54%), Query Frame = 1 Query: 304 VLAAIAISLAF--RTFVAEPRYIPSLSMYPTFD-----VGDRLVAEKVSYYFRKPCASDIVIFKSPPVLQEVGYS------------------------DDDVFIKRVVAKEGDIVEVRKG-HLVVNGVERNEDYI------LEPPAY-----EMKPTRVPENYVFVMGDNRNNSYDSHVWGPL-----------PSKNIIGRSVFRYWPPNR 780 VLA IA+ L + TFVA P IPS SM PT VGDR++ +K+SY F P D+++F+ PP VGY D++ +KRV+A G V+ R L VNG E Y+ +P Y E P VP V+VMGDNR +S DS PL P N+IG++ WPP+R Sbjct: 70 VLAVIAVVLYYVMLTFVARPYLIPSESMEPTLHGCSTCVGDRIMVDKLSYRFGSPQPGDVIVFRGPPSWN-VGYKSIRSHNVAVRWVQNALSFIGFVPPDENDLVKRVIAVGGQTVQCRSDTGLTVNGRPLKEPYLDPATMMADPSIYPCLGSEFGPVTVPPGRVWVMGDNRTHSADSRAHCPLLCTDDPLPGTVPVANVIGKARLIVWPPSR 281
BLAST of Phvul.002G312800.1 vs. DB:Swiss
Match: LEP_MYCTO (Signal peptidase I OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=lepB PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 1.136e-21 Identity = 74/213 (34.74%), Postives = 97/213 (45.54%), Query Frame = 1 Query: 304 VLAAIAISLAF--RTFVAEPRYIPSLSMYPTFD-----VGDRLVAEKVSYYFRKPCASDIVIFKSPPVLQEVGYS------------------------DDDVFIKRVVAKEGDIVEVRKG-HLVVNGVERNEDYI------LEPPAY-----EMKPTRVPENYVFVMGDNRNNSYDSHVWGPL-----------PSKNIIGRSVFRYWPPNR 780 VLA IA+ L + TFVA P IPS SM PT VGDR++ +K+SY F P D+++F+ PP VGY D++ +KRV+A G V+ R L VNG E Y+ +P Y E P VP V+VMGDNR +S DS PL P N+IG++ WPP+R Sbjct: 70 VLAVIAVVLYYVMLTFVARPYLIPSESMEPTLHGCSTCVGDRIMVDKLSYRFGSPQPGDVIVFRGPPSWN-VGYKSIRSHNVAVRWVQNALSFIGFVPPDENDLVKRVIAVGGQTVQCRSDTGLTVNGRPLKEPYLDPATMMADPSIYPCLGSEFGPVTVPPGRVWVMGDNRTHSADSRAHCPLLCTDDPLPGTVPVANVIGKARLIVWPPSR 281
BLAST of Phvul.002G312800.1 vs. DB:Swiss
Match: LEPT_BACSU (Signal peptidase I T OS=Bacillus subtilis (strain 168) OX=224308 GN=sipT PE=1 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 6.694e-19 Identity = 60/197 (30.46%), Postives = 92/197 (46.70%), Query Frame = 1 Query: 235 RDAEKKEGPLPEWLNFTTDDAKTVLAAIAISLAFRTFVAEPRYIPSLSMYPTFDVGDRLVAEKVSYYFRKPCASDIVIFKSPPVLQEVGYSDDDVFIKRVVAKEGDIVEVRKGHLVVNGVERNEDYILEPPAYEMK----------PTRVPENYVFVMGDNRNNSYDS-HVWGPLPSKNIIGRSVFRYWPPNRIAGT 792 + A+KK EW K ++ A+ ++L R F+ EP + SMYPT G+RL K Y + DIVI G + ++KR++ K G+ V+++ L +NG + E Y+ + K P +VP+ FVMGDNR NS DS + G + I+G S F ++P N + T Sbjct: 11 KTAKKKTNTYLEW-------GKAIVIAVLLALLIRHFLFEPYLVEGSSMYPTLHDGERLFVNKTVNYIGELKRGDIVIIN--------GETSKIHYVKRLIGKPGETVQMKDDTLYINGKKVAEPYLSKNKKEAEKLGVSLTGDFGPVKVPKGKYFVMGDNRLNSMDSRNGLGLIAEDRIVGTSKFVFFPFNEMRQT 192 The following BLAST results are available for this feature:
BLAST of Phvul.002G312800.1 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
Sequences
The
following sequences are available for this feature:
protein sequence of Phvul.002G312800.1_Pv_G19833_v2.1 >Phvul.002G312800.1_Pv_G19833_v2.1 ID=Phvul.002G312800.1_Pv_G19833_v2.1; Name=Phvul.002G312800.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=287bpback to top mRNA from alignment at Chr02:47975733..47978517- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Phvul.002G312800.1_Pv_G19833_v2.1 ID=Phvul.002G312800.1_Pv_G19833_v2.1; Name=Phvul.002G312800.1; organism=Phaseolus vulgaris; type=mRNA; length=2785bp; location=Sequence derived from: Chr02:47975733..47978517- (Phaseolus vulgarisback to top Coding sequence (CDS) from alignment at Chr02:47975733..47978517- >Phvul.002G312800.1_Pv_G19833_v2.1 ID=Phvul.002G312800.1_Pv_G19833_v2.1; Name=Phvul.002G312800.1; organism=Phaseolus vulgaris; type=CDS; length=861bp; location=Sequence derived from: Chr02:47975733..47978517- (Phaseolus vulgarisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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