Phvul.003G080501.1

Transcript Overview
NamePhvul.003G080501.1
Unique NamePhvul.003G080501.1_Pv_G19833_v2.1
TypemRNA
OrganismPhaseolus vulgaris (Common bean)
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr03supercontigChr03:13253209..13254468 +Phaseolus vulgaris G19833 genome v2.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Phaseolus vulgaris G19833 genome v2.12019-09-17
InterProScan: Phaseolus vulgaris G19833 genome v2.12019-10-18
BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot2019-10-18
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
pvpvR202Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pspvL020Pisum sativum Cameor genome v1aPisum sativum
pspvL348Pisum sativum Cameor genome v1aPisum sativum
pvvuR343Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pvvuR370Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caipvL0033Cicer arietinum ICC 4958 genome v2Cicer arietinum
crpvL032Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
capvL026Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
caipvL0956Cicer arietinum ICC 4958 genome v2Cicer arietinum
crpvL951Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
capvL728Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccpvL0081Cajanus cajan Asha genome v1.0Cajanus cajan
ccpvL0524Cajanus cajan Asha genome v1.0Cajanus cajan
anpvL0060Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0272Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0477Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0658Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0931Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
aspvL204Vigna angularis Jingnong 6 genome v1.1Vigna angularis
pvzwsR287Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvzwsR335Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvvfhR330Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvtifR328Vicia faba cv. Tiffany genome v1.0Vicia faba
pvvrvR280Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvrvR351Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvuaR286Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvuaR324Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvssR358Vicia sativa cv. Studenica genome v1.0Vicia sativa
pvvssR436Vicia sativa cv. Studenica genome v1.0Vicia sativa
canpvL019Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canpvL698Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjpvL125Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjpvL293Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carpvL023Cicer arietinum
carpvL707Cicer arietinum
ccapvL176Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapvL748Cajanus cajan cv. Asha genome v2.0Cajanus cajan
pvvumR373Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvumR451Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvvaR361Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvvaR428Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvasR381Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvstR374Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvvasR450Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvstR442Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvpvfR306Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR337Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvvunR316Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
pvvunR341Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Phvul.006G148400.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Phvul.003G080501Phvul.003G080501_Pv_G19833_v2.1Phaseolus vulgarisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Phvul.003G080501.1Phvul.003G080501.1_Pv_G19833_v2.1-proteinPhaseolus vulgarispolypeptide
Phvul.003G080501.1_Pv_G19833_v2.1Phvul.003G080501.1_Pv_G19833_v2.1Phaseolus vulgarispolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.003G080501.1.v2.1.CDS.1Phvul.003G080501.1.v2.1.CDS.1_Pv_G19833_v2.1Phaseolus vulgarisCDS


Homology
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BLAST of Phvul.003G080501.1 vs. DB:Swiss
Match: FB333_ARATH (Probable F-box protein At4g22030 OS=Arabidopsis thaliana OX=3702 GN=At4g22030 PE=4 SV=1)

HSP 1 Score: 346.28 bits (887), Expect = 1.955e-112
Identity = 206/439 (46.92%), Postives = 290/439 (66.06%), Query Frame = 1 
Query:    1 MASLRTTP-ILSLSSSSVRKVNASIPSPLTYSVPKLPSRTLKIHQLHGSKDTIPLEKNLITTQIY-EDL--------YSPTNKSNNLTVQ---LYAILEEVADRIQMHTNIGEQRNNWNTLLLNSVNMIXXXXXXXXXXXXXXSGDTEXXXXXXXXXXXXXXXXXXGMSLIMNKIQPSQLAEEQRNATRLFKQLHTQIQTII---ALGNPTEKDVKSSMEKVLAIDRAYPLPLLGAMLDKFPAKYEPAVWWPSSQ---SHRRSKTQESKRTNNGWSEDLEKELREVIEVIKKKDCEDYERLGNIALKVSKSFAIAGPLLSGIAAVGSSFVGNGS-LAALVPLMAGSLASAVNAFEHGGQVGMVFEMYRNCGGFFTLLEETIRDTLEEKDIEKRENGEVFEMKVAMKLGRSVSELRRLASKSASCGMEGMVVDEFASKLF 1257
            MASL+ +  +L+ S SS  +  ++I      S+PKLP   + I Q+        +E+ ++    + EDL               ++  +Q   L A+LEEV DR++MH NIGEQRNNWN+LLLNSVNMITLTA  MAG+A+  +   ++       S+ LL SA  G++ +MNKIQPSQL EEQRNATRLFKQL  +I+ ++   +    +E+DVK ++++VL +D+AYPLPL+G ML+KFP +++PA WWP ++   +H R++        NGW+ +LE E+REV+EVIK +D E+YE+LGN+ALK+++  AI+GP+L+GIAAV S F+G+GS LA +V     SLA+ VN  EHGGQVGMV EMYRN  GFF+L+E+TI+        E+RENG+VFE KVA+KLGRS+SELR LA +S+    +G    +  S L 
Sbjct:    1 MASLQASRFMLTTSCSSCTRTRSAI------SIPKLPKFNVSIPQIPIKNRNFRVEEPILRLDGFAEDLDLSLSERQRQKKRGCDDQVLQRSRLMAVLEEVIDRVEMHKNIGEQRNNWNSLLLNSVNMITLTAALMAGIASMNASGIDSVSAVSIASTVLLASAT-GLAALMNKIQPSQLVEEQRNATRLFKQLRNRIEMVLREKSEDGISEEDVKEAIKRVLCLDKAYPLPLVGTMLEKFPQEFKPATWWPETKPEPTHSRTEA-------NGWNSELEMEMREVVEVIKSRDAEEYEKLGNVALKLNRVLAISGPVLTGIAAVSSGFIGHGSGLAGVVATTCASLAAVVNTLEHGGQVGMVVEMYRNSAGFFSLMEDTIK-------TERRENGQVFETKVALKLGRSLSELRDLARRSSLSRFDGSSWSKLPSDLL 418
The following BLAST results are available for this feature:
BLAST of Phvul.003G080501.1 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
FB333_ARATH1.955e-11246.92Probable F-box protein At4g22030 OS=Arabidopsis th... [more]
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InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 257..277
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 236..256
IPR027949Petal formation-expressedPFAMPF14476Chloroplast_dufcoord: 80..395
e-value: 3.3E-159
score: 529.1

Sequences
The following sequences are available for this feature:

protein sequence of Phvul.003G080501.1_Pv_G19833_v2.1

>Phvul.003G080501.1_Pv_G19833_v2.1 ID=Phvul.003G080501.1_Pv_G19833_v2.1; Name=Phvul.003G080501.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=420bp
MASLRTTPILSLSSSSVRKVNASIPSPLTYSVPKLPSRTLKIHQLHGSKD
TIPLEKNLITTQIYEDLYSPTNKSNNLTVQLYAILEEVADRIQMHTNIGE
QRNNWNTLLLNSVNMITLTATAMAGVAAATSGDTETPLLALKLSSTLLFS
AATGMSLIMNKIQPSQLAEEQRNATRLFKQLHTQIQTIIALGNPTEKDVK
SSMEKVLAIDRAYPLPLLGAMLDKFPAKYEPAVWWPSSQSHRRSKTQESK
RTNNGWSEDLEKELREVIEVIKKKDCEDYERLGNIALKVSKSFAIAGPLL
SGIAAVGSSFVGNGSLAALVPLMAGSLASAVNAFEHGGQVGMVFEMYRNC
GGFFTLLEETIRDTLEEKDIEKRENGEVFEMKVAMKLGRSVSELRRLASK
SASCGMEGMVVDEFASKLF*
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mRNA from alignment at Chr03:13253209..13254468+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Phvul.003G080501.1_Pv_G19833_v2.1 ID=Phvul.003G080501.1_Pv_G19833_v2.1; Name=Phvul.003G080501.1; organism=Phaseolus vulgaris; type=mRNA; length=1260bp; location=Sequence derived from: Chr03:13253209..13254468+ (Phaseolus vulgaris
ATGGCTTCTTTACGAACCACACCTATACTCTCTTTATCCTCTTCTTCGGT
AAGAAAAGTCAACGCTTCTATCCCTTCACCACTCACTTATTCCGTTCCAA
AACTGCCATCAAGAACACTCAAGATTCATCAACTTCATGGATCCAAAGAC
ACTATTCCATTGGAGAAGAATCTGATTACCACACAGATATATGAAGATTT
ATACAGTCCCACCAACAAATCTAATAACCTCACAGTTCAACTCTACGCAA
TTCTAGAGGAAGTCGCTGACAGAATTCAAATGCACACAAACATTGGCGAA
CAAAGAAACAACTGGAACACTCTTCTTCTTAACTCCGTCAACATGATCAC
TCTCACTGCCACAGCCATGGCTGGTGTTGCTGCAGCCACCAGTGGTGACA
CTGAGACACCTCTTTTGGCCTTGAAACTATCATCCACTCTCTTGTTTTCT
GCGGCCACTGGAATGTCACTCATCATGAACAAAATTCAGCCCTCACAACT
CGCCGAGGAGCAACGCAATGCTACAAGGCTTTTCAAACAGCTTCATACCC
AAATCCAAACCATAATCGCTCTTGGAAATCCCACAGAGAAAGATGTGAAG
AGTTCAATGGAGAAGGTGCTGGCAATCGACAGAGCTTACCCACTTCCCTT
GTTGGGAGCCATGCTTGACAAGTTTCCCGCAAAATATGAACCTGCAGTCT
GGTGGCCTTCGTCTCAGTCCCATAGAAGAAGCAAAACACAAGAGAGCAAA
AGGACTAACAATGGATGGAGTGAAGACCTTGAAAAGGAATTGAGAGAAGT
GATTGAAGTGATAAAGAAGAAAGACTGTGAGGACTACGAGAGGCTTGGAA
ACATAGCGTTGAAGGTGAGCAAGAGTTTTGCAATTGCGGGGCCTTTACTG
AGTGGGATTGCAGCAGTGGGGTCTTCGTTTGTGGGGAATGGATCATTGGC
GGCATTAGTGCCTCTCATGGCTGGCTCATTGGCTTCAGCAGTTAATGCAT
TTGAGCATGGTGGCCAAGTAGGCATGGTGTTTGAAATGTACAGAAACTGT
GGTGGATTCTTCACGCTGTTGGAAGAGACGATTAGGGACACGCTTGAAGA
AAAAGACATTGAGAAAAGAGAAAACGGTGAGGTATTTGAAATGAAGGTGG
CAATGAAGTTGGGAAGAAGCGTTTCGGAGCTGAGACGCCTTGCCTCAAAA
TCTGCTTCCTGTGGTATGGAAGGAATGGTCGTAGATGAATTCGCCAGCAA
GCTCTTTTAA
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Coding sequence (CDS) from alignment at Chr03:13253209..13254468+

>Phvul.003G080501.1_Pv_G19833_v2.1 ID=Phvul.003G080501.1_Pv_G19833_v2.1; Name=Phvul.003G080501.1; organism=Phaseolus vulgaris; type=CDS; length=1260bp; location=Sequence derived from: Chr03:13253209..13254468+ (Phaseolus vulgaris
ATGGCTTCTTTACGAACCACACCTATACTCTCTTTATCCTCTTCTTCGGT
AAGAAAAGTCAACGCTTCTATCCCTTCACCACTCACTTATTCCGTTCCAA
AACTGCCATCAAGAACACTCAAGATTCATCAACTTCATGGATCCAAAGAC
ACTATTCCATTGGAGAAGAATCTGATTACCACACAGATATATGAAGATTT
ATACAGTCCCACCAACAAATCTAATAACCTCACAGTTCAACTCTACGCAA
TTCTAGAGGAAGTCGCTGACAGAATTCAAATGCACACAAACATTGGCGAA
CAAAGAAACAACTGGAACACTCTTCTTCTTAACTCCGTCAACATGATCAC
TCTCACTGCCACAGCCATGGCTGGTGTTGCTGCAGCCACCAGTGGTGACA
CTGAGACACCTCTTTTGGCCTTGAAACTATCATCCACTCTCTTGTTTTCT
GCGGCCACTGGAATGTCACTCATCATGAACAAAATTCAGCCCTCACAACT
CGCCGAGGAGCAACGCAATGCTACAAGGCTTTTCAAACAGCTTCATACCC
AAATCCAAACCATAATCGCTCTTGGAAATCCCACAGAGAAAGATGTGAAG
AGTTCAATGGAGAAGGTGCTGGCAATCGACAGAGCTTACCCACTTCCCTT
GTTGGGAGCCATGCTTGACAAGTTTCCCGCAAAATATGAACCTGCAGTCT
GGTGGCCTTCGTCTCAGTCCCATAGAAGAAGCAAAACACAAGAGAGCAAA
AGGACTAACAATGGATGGAGTGAAGACCTTGAAAAGGAATTGAGAGAAGT
GATTGAAGTGATAAAGAAGAAAGACTGTGAGGACTACGAGAGGCTTGGAA
ACATAGCGTTGAAGGTGAGCAAGAGTTTTGCAATTGCGGGGCCTTTACTG
AGTGGGATTGCAGCAGTGGGGTCTTCGTTTGTGGGGAATGGATCATTGGC
GGCATTAGTGCCTCTCATGGCTGGCTCATTGGCTTCAGCAGTTAATGCAT
TTGAGCATGGTGGCCAAGTAGGCATGGTGTTTGAAATGTACAGAAACTGT
GGTGGATTCTTCACGCTGTTGGAAGAGACGATTAGGGACACGCTTGAAGA
AAAAGACATTGAGAAAAGAGAAAACGGTGAGGTATTTGAAATGAAGGTGG
CAATGAAGTTGGGAAGAAGCGTTTCGGAGCTGAGACGCCTTGCCTCAAAA
TCTGCTTCCTGTGGTATGGAAGGAATGGTCGTAGATGAATTCGCCAGCAA
GCTCTTTTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR027949Chloroplast_duf