Phvul.003G080501.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of Phvul.003G080501.1 vs. DB:Swiss
Match: FB333_ARATH (Probable F-box protein At4g22030 OS=Arabidopsis thaliana OX=3702 GN=At4g22030 PE=4 SV=1) HSP 1 Score: 346.28 bits (887), Expect = 1.955e-112 Identity = 206/439 (46.92%), Postives = 290/439 (66.06%), Query Frame = 1 Query: 1 MASLRTTP-ILSLSSSSVRKVNASIPSPLTYSVPKLPSRTLKIHQLHGSKDTIPLEKNLITTQIY-EDL--------YSPTNKSNNLTVQ---LYAILEEVADRIQMHTNIGEQRNNWNTLLLNSVNMIXXXXXXXXXXXXXXSGDTEXXXXXXXXXXXXXXXXXXGMSLIMNKIQPSQLAEEQRNATRLFKQLHTQIQTII---ALGNPTEKDVKSSMEKVLAIDRAYPLPLLGAMLDKFPAKYEPAVWWPSSQ---SHRRSKTQESKRTNNGWSEDLEKELREVIEVIKKKDCEDYERLGNIALKVSKSFAIAGPLLSGIAAVGSSFVGNGS-LAALVPLMAGSLASAVNAFEHGGQVGMVFEMYRNCGGFFTLLEETIRDTLEEKDIEKRENGEVFEMKVAMKLGRSVSELRRLASKSASCGMEGMVVDEFASKLF 1257 MASL+ + +L+ S SS + ++I S+PKLP + I Q+ +E+ ++ + EDL ++ +Q L A+LEEV DR++MH NIGEQRNNWN+LLLNSVNMITLTA MAG+A+ + ++ S+ LL SA G++ +MNKIQPSQL EEQRNATRLFKQL +I+ ++ + +E+DVK ++++VL +D+AYPLPL+G ML+KFP +++PA WWP ++ +H R++ NGW+ +LE E+REV+EVIK +D E+YE+LGN+ALK+++ AI+GP+L+GIAAV S F+G+GS LA +V SLA+ VN EHGGQVGMV EMYRN GFF+L+E+TI+ E+RENG+VFE KVA+KLGRS+SELR LA +S+ +G + S L Sbjct: 1 MASLQASRFMLTTSCSSCTRTRSAI------SIPKLPKFNVSIPQIPIKNRNFRVEEPILRLDGFAEDLDLSLSERQRQKKRGCDDQVLQRSRLMAVLEEVIDRVEMHKNIGEQRNNWNSLLLNSVNMITLTAALMAGIASMNASGIDSVSAVSIASTVLLASAT-GLAALMNKIQPSQLVEEQRNATRLFKQLRNRIEMVLREKSEDGISEEDVKEAIKRVLCLDKAYPLPLVGTMLEKFPQEFKPATWWPETKPEPTHSRTEA-------NGWNSELEMEMREVVEVIKSRDAEEYEKLGNVALKLNRVLAISGPVLTGIAAVSSGFIGHGSGLAGVVATTCASLAAVVNTLEHGGQVGMVVEMYRNSAGFFSLMEDTIK-------TERRENGQVFETKVALKLGRSLSELRDLARRSSLSRFDGSSWSKLPSDLL 418 The following BLAST results are available for this feature:
BLAST of Phvul.003G080501.1 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot) Total hits: 1
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
Sequences
The
following sequences are available for this feature:
protein sequence of Phvul.003G080501.1_Pv_G19833_v2.1 >Phvul.003G080501.1_Pv_G19833_v2.1 ID=Phvul.003G080501.1_Pv_G19833_v2.1; Name=Phvul.003G080501.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=420bpback to top mRNA from alignment at Chr03:13253209..13254468+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>Phvul.003G080501.1_Pv_G19833_v2.1 ID=Phvul.003G080501.1_Pv_G19833_v2.1; Name=Phvul.003G080501.1; organism=Phaseolus vulgaris; type=mRNA; length=1260bp; location=Sequence derived from: Chr03:13253209..13254468+ (Phaseolus vulgarisback to top Coding sequence (CDS) from alignment at Chr03:13253209..13254468+ >Phvul.003G080501.1_Pv_G19833_v2.1 ID=Phvul.003G080501.1_Pv_G19833_v2.1; Name=Phvul.003G080501.1; organism=Phaseolus vulgaris; type=CDS; length=1260bp; location=Sequence derived from: Chr03:13253209..13254468+ (Phaseolus vulgarisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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