Phvul.003G081800.3

Transcript Overview
NamePhvul.003G081800.3
Unique NamePhvul.003G081800.3_Pv_G19833_v2.1
TypemRNA
OrganismPhaseolus vulgaris (Common bean)
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr03supercontigChr03:13510857..13515994 -Phaseolus vulgaris G19833 genome v2.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Phaseolus vulgaris G19833 genome v2.12019-09-17
InterProScan: Phaseolus vulgaris G19833 genome v2.12019-10-18
BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot2019-10-18
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
pvpvR202Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pspvL336Pisum sativum Cameor genome v1aPisum sativum
pspvL348Pisum sativum Cameor genome v1aPisum sativum
pvvuR343Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pvvuR370Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caipvL0033Cicer arietinum ICC 4958 genome v2Cicer arietinum
crpvL032Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
capvL026Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
caipvL0961Cicer arietinum ICC 4958 genome v2Cicer arietinum
crpvL951Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
capvL728Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccpvL0081Cajanus cajan Asha genome v1.0Cajanus cajan
ccpvL0524Cajanus cajan Asha genome v1.0Cajanus cajan
anpvL0060Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0272Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0477Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0658Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0931Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
aspvL044Vigna angularis Jingnong 6 genome v1.1Vigna angularis
aspvL192Vigna angularis Jingnong 6 genome v1.1Vigna angularis
pvzwsR287Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvzwsR335Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvvfhR330Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvvfhR397Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvtifR328Vicia faba cv. Tiffany genome v1.0Vicia faba
pvtifR397Vicia faba cv. Tiffany genome v1.0Vicia faba
pvvrvR280Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvrvR351Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvuaR286Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvuaR324Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvssR358Vicia sativa cv. Studenica genome v1.0Vicia sativa
pvvssR436Vicia sativa cv. Studenica genome v1.0Vicia sativa
canpvL019Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canpvL698Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjpvL125Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjpvL293Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carpvL023Cicer arietinum
carpvL707Cicer arietinum
ccapvL176Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapvL748Cajanus cajan cv. Asha genome v2.0Cajanus cajan
pvvumR373Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvumR451Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvvaR361Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvvaR428Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvasR381Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvstR374Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvvasR450Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvstR442Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvpvfR306Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR337Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvvunR316Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
pvvunR341Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Phvul.003G081800Phvul.003G081800_Pv_G19833_v2.1Phaseolus vulgarisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Phvul.003G081800.3Phvul.003G081800.3_Pv_G19833_v2.1-proteinPhaseolus vulgarispolypeptide
Phvul.003G081800.3_Pv_G19833_v2.1Phvul.003G081800.3_Pv_G19833_v2.1Phaseolus vulgarispolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.003G081800.3.v2.1.CDS.4Phvul.003G081800.3.v2.1.CDS.4_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.003G081800.3.v2.1.CDS.3Phvul.003G081800.3.v2.1.CDS.3_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.003G081800.3.v2.1.CDS.2Phvul.003G081800.3.v2.1.CDS.2_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.003G081800.3.v2.1.CDS.1Phvul.003G081800.3.v2.1.CDS.1_Pv_G19833_v2.1Phaseolus vulgarisCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.003G081800.3.v2.1.three_prime_UTR.1Phvul.003G081800.3.v2.1.three_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgaristhree_prime_UTR


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.003G081800.3.v2.1.five_prime_UTR.1Phvul.003G081800.3.v2.1.five_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgarisfive_prime_UTR


Homology
BLAST of Phvul.003G081800.3 vs. DB:Swiss
Match: HSBH1_SOYBN (Homeobox protein SBH1 OS=Glycine max OX=3847 GN=H1 PE=2 SV=1)

HSP 1 Score: 438.728 bits (1127), Expect = 7.811e-153
Identity = 229/260 (88.08%), Postives = 241/260 (92.69%), Query Frame = 1
Query:  352 AVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASAAVTMAGGTAR-----IGEDPALDQFMEAYCEMLIKYEQELTKPFKEAMLFLQRIECQFKSLTISSSDTAGCNEGGDRNGSSE-DIDVHNNIIDPQAEDQELKGQLLRKYRGYLGSLKQEFTKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVVDPSHPHYYMENVVGNPFP-DLSHTML 1110
            AVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASAA TMAGG A      IGEDPALDQFMEAYCEML KYEQEL+KP KEAMLFLQRIECQFK+LTISSSD A  NEGGDRNGSSE D+D+HN +IDPQAED++LKGQLLRKY GYLGSLKQEF KKRKKGKLPKEARQQLL+WW+RHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVV+DPSHPHYYM+NV+GNPFP DLSH ML
Sbjct:  123 AVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASAA-TMAGGDAAAGSSCIGEDPALDQFMEAYCEMLTKYEQELSKPLKEAMLFLQRIECQFKNLTISSSDFAS-NEGGDRNGSSEEDVDLHN-MIDPQAEDRDLKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWNRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDPSHPHYYMDNVLGNPFPMDLSHPML 379          
BLAST of Phvul.003G081800.3 vs. DB:Swiss
Match: LET6_SOLLC (Homeobox protein knotted-1-like LET6 OS=Solanum lycopersicum OX=4081 GN=LET6 PE=2 SV=1)

HSP 1 Score: 377.867 bits (969), Expect = 3.228e-129
Identity = 195/255 (76.47%), Postives = 221/255 (86.67%), Query Frame = 1
Query:  370 MAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASAAV----TMAGGTARIGEDPALDQFMEAYCEMLIKYEQELTKPFKEAMLFLQRIECQFKSLTIS--SSDTAGCNEGGDRNGSS-EDIDVHNNIIDPQAEDQELKGQLLRKYRGYLGSLKQEFTKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVVDPSHPHYYMENVVGNPFP-DLSHTML 1110
            MAHPHYHRLL AY+NCQK+GAPPEVVARLEE CA++A     + + G   IGEDPALDQFMEAYCEML KYEQEL+KPFKEAM+FL RIECQFK+LT++  SS  +   E  DRNGSS E++DV+N+ IDPQAED+ELKGQLLRKY GYLGSLKQEF KKRKKGKLPKEARQQL+DWW RH KWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVV+D +HPHYYM+NV+ N FP D++ ++L
Sbjct:  101 MAHPHYHRLLTAYLNCQKIGAPPEVVARLEEICATSATMGRSSSSSGGGIIGEDPALDQFMEAYCEMLTKYEQELSKPFKEAMVFLSRIECQFKALTLAPNSSHESALGEAMDRNGSSDEEVDVNNSFIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLVDWWLRHIKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYMDNVLANHFPMDMTPSLL 355          
BLAST of Phvul.003G081800.3 vs. DB:Swiss
Match: STM_BRAOL (Homeobox protein SHOOT MERISTEMLESS OS=Brassica oleracea OX=3712 GN=STM PE=2 SV=1)

HSP 1 Score: 378.637 bits (971), Expect = 3.551e-129
Identity = 211/285 (74.04%), Postives = 234/285 (82.11%), Query Frame = 1
Query:  283 FMEIHXXXXXXXXXXXXXXXXXXAVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASAAVTMA--GGTARIGEDPALDQFMEAYCEMLIKYEQELTKPFKEAMLFLQRIECQFKSLTISSSDTAGCNEGG---DRNGSSED-IDVHNNIIDPQAEDQELKGQLLRKYRGYLGSLKQEFTKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVVDPSHP-HYYMENVVGNPFP--DLSHTML 1110
            FMEI+ +N        S   SS  VKAKIMAHPHYHRLL AYVNCQKVGAPPEV ARLEE C+SAA   A  G T  +GEDP LDQFMEAYCEML+KYEQEL+KPFKEAM+FLQ +ECQFKSL++SS  + G  E     + NGSSE+ +D++N  +DPQAED+ELKGQLLRKY GYLGSLKQEF KKRKKGKLPKEARQQLLDWWSRHYKWPYPSE QKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVV+D +HP HY+M NV+GNPFP   +S TML
Sbjct:   99 FMEINHQNELLAGGLQSPVLSSLLVKAKIMAHPHYHRLLLAYVNCQKVGAPPEVQARLEETCSSAAAAAASMGPTGSLGEDPGLDQFMEAYCEMLVKYEQELSKPFKEAMVFLQHVECQFKSLSLSSPSSLGYGEAAIERNNNGSSEEEVDMNNEFVDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSEQQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDATHPLHYFMGNVLGNPFPIDHISGTML 383          
BLAST of Phvul.003G081800.3 vs. DB:Swiss
Match: STM_ARATH (Homeobox protein SHOOT MERISTEMLESS OS=Arabidopsis thaliana OX=3702 GN=STM PE=1 SV=2)

HSP 1 Score: 374.4 bits (960), Expect = 1.558e-127
Identity = 207/262 (79.01%), Postives = 228/262 (87.02%), Query Frame = 1
Query:  355 VKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASAAVTMA--GGTARIGEDPALDQFMEAYCEMLIKYEQELTKPFKEAMLFLQRIECQFKSLTISSSDTA-GCNEGG-DRN---GSSEDIDVHNNIIDPQAEDQELKGQLLRKYRGYLGSLKQEFTKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVVDPSHP-HYYMENVVGNPFP--DLSHTML 1110
            VKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEAC+SAA   A  G T  +GEDP LDQFMEAYCEML+KYEQEL+KPFKEAM+FLQR+ECQFKSL++SS  +  G  E   DRN    S E++D++N  +DPQAED+ELKGQLLRKY GYLGSLKQEF KKRKKGKLPKEARQQLLDWWSRHYKWPYPSE QKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVV+D +HP HY+M+NV+GNPFP   +S TML
Sbjct:  121 VKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACSSAAAAAASMGPTGCLGEDPGLDQFMEAYCEMLVKYEQELSKPFKEAMVFLQRVECQFKSLSLSSPSSFSGYGETAIDRNNNGSSEEEVDMNNEFVDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSEQQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDATHPHHYFMDNVLGNPFPMDHISSTML 382          
BLAST of Phvul.003G081800.3 vs. DB:Swiss
Match: KNAT1_ARATH (Homeobox protein knotted-1-like 1 OS=Arabidopsis thaliana OX=3702 GN=KNAT1 PE=1 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 3.127e-89
Identity = 148/247 (59.92%), Postives = 176/247 (71.26%), Query Frame = 1
Query:  352 AVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASAAVTMAGGTARIG---EDPALDQFMEAYCEMLIKYEQELTKPFKEAMLFLQRIECQFKSLTISSSDTAGCNEGGDRNGSSEDIDVHNNI--------IDPQAEDQELKGQLLRKYRGYLGSLKQEFTKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVVDP-SHPHY 1056
            A+KAKI+AHPHY  LL AY++CQK+GAPP+VV R+  A           T  +     DP LDQFMEAYC+ML+KY +ELT+P +EAM F++RIE Q   L  S        +G   N  S D +  NN         IDP+AED+ELK  LL+KY GYL SLKQE +KK+KKGKLPKEARQ+LL WW  HYKWPYPSES+K+ALAESTGLDQKQINNWFINQRKRHWKPSEDMQF+V+D   HPH+
Sbjct:  133 AMKAKIIAHPHYSTLLQAYLDCQKIGAPPDVVDRITAARQDFEARQQRSTPSVSASSRDPELDQFMEAYCDMLVKYREELTRPIQEAMEFIRRIESQLSMLCQSPIHILNNPDGKSDNMGSSDEEQENNSGGETELPEIDPRAEDRELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKEARQKLLTWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLQHPHH 379          
BLAST of Phvul.003G081800.3 vs. DB:Swiss
Match: KNOS6_ORYSJ (Homeobox protein knotted-1-like 6 OS=Oryza sativa subsp. japonica OX=39947 GN=OSH1 PE=1 SV=2)

HSP 1 Score: 271.937 bits (694), Expect = 1.307e-87
Identity = 146/248 (58.87%), Postives = 177/248 (71.37%), Query Frame = 1
Query:  352 AVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASAAVT--MAGGTARIGEDPALDQFMEAYCEMLIKYEQELTKPFKEAMLFLQRIECQFKSLTISSSDTAGCNEGG----DRNGSSEDIDVHNNIIDPQAEDQELKGQLLRKYRGYLGSLKQEFTKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVVDPSHP----HYYME 1065
            A+KAKI++HPHY  LLAAY++CQKVGAPPEV ARL        +    A G      +P LDQFMEAY EML+KY +ELT+P +EAM FL+R+E Q  +L+IS          G    D+ GS  + ++    ID    DQELK  LL+KY GYL SLKQE +KK+KKGKLPK+ARQQLL+WW  HYKWPYPSESQK+ALAESTGLD KQINNWFINQRKRHWKPS++MQFV++D  HP     +YM+
Sbjct:  103 AIKAKIISHPHYSSLLAAYLDCQKVGAPPEVAARLTAVAQDLELRQRTALGVLGAATEPELDQFMEAYHEMLVKYREELTRPLQEAMEFLRRVETQLNTLSISGRSLRNILSSGSSEEDQEGSGGETELPE--IDAHGVDQELKHHLLKKYSGYLSSLKQELSKKKKKGKLPKDARQQLLNWWELHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSDEMQFVMMDGYHPTNAAAFYMD 348          
BLAST of Phvul.003G081800.3 vs. DB:Swiss
Match: KNOX3_HORVU (Homeobox protein KNOX3 OS=Hordeum vulgare OX=4513 GN=KNOX3 PE=1 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 2.865e-87
Identity = 149/248 (60.08%), Postives = 177/248 (71.37%), Query Frame = 1
Query:  352 AVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASAAV---TMAGGTARIGEDPALDQFMEAYCEMLIKYEQELTKPFKEAMLFLQRIECQFKSLTISSSDTAGCNEGG----DRNGSSEDIDVHNNIIDPQAEDQELKGQLLRKYRGYLGSLKQEFTKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVVDPSHP---HYYME 1065
            A+KAKI++HPHY  LLAAY++CQKVGAPPEV ARL        +   T  GG     E P LDQFMEAY EML+KY +ELT+P +EAM FL+R+E Q  SL+IS          G    D+ GS  + ++    ID    DQELK  LL+KY GYL SLKQE +KK+KKGKLPKEARQQLL WW  HYKWPYPSESQK+ALAESTGLD KQINNWFINQRKRHWKP+++MQFV++D  HP    +YM+
Sbjct:  107 AIKAKIISHPHYSSLLAAYLDCQKVGAPPEVSARLTAVAQDLELRQRTALGGLGTATE-PELDQFMEAYHEMLVKYREELTRPLQEAMEFLRRVETQLNSLSISGRSLRNILSTGSSEEDQEGSGGETELPE--IDAHGVDQELKHHLLKKYSGYLSSLKQELSKKKKKGKLPKEARQQLLSWWEMHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPTDEMQFVMMDAYHPPNAAFYMD 351          
BLAST of Phvul.003G081800.3 vs. DB:Swiss
Match: KNAP2_MALDO (Homeobox protein knotted-1-like 2 OS=Malus domestica OX=3750 PE=2 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 1.232e-85
Identity = 147/246 (59.76%), Postives = 175/246 (71.14%), Query Frame = 1
Query:  352 AVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACAS-AAVTMAGGTAR-IGEDPALDQFMEAYCEMLIKYEQELTKPFKEAMLFLQRIECQFK---------SLTISSSDTAGCNEGGDRNGSSEDIDVHNNI--IDPQAEDQELKGQLLRKYRGYLGSLKQEFTKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVVDPSHP 1050
            A+KAKI+AHP Y  LL AY++CQ+VGAP +VVARL  A     A   + GT+R   +DP LDQFMEAY +ML+KY +ELT+P +EAM F++RIE Q            L I S     C   G      E+      +  IDP+AED+ELK  LLRKY GYL SLKQE +KK+KKGKLPK+ARQ+LL WW  HYKWPYPSES+K+ALAESTGLDQKQINNWFINQRKRHWKPSEDMQF+V+D  HP
Sbjct:  131 AIKAKIIAHPQYSNLLEAYMDCQRVGAPSDVVARLSVARQEFEARQRSSGTSRETSKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMLGNNNNAPPLRIFSPSEDKCEGIGSSEEEQENSGGETEVPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLSWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHP 376          
BLAST of Phvul.003G081800.3 vs. DB:Swiss
Match: KNOSC_ORYSJ (Homeobox protein knotted-1-like 12 OS=Oryza sativa subsp. japonica OX=39947 GN=OSH15 PE=2 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 7.824e-85
Identity = 150/259 (57.92%), Postives = 180/259 (69.50%), Query Frame = 1
Query:  352 AVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASAAVTMAGGTAR-IGEDPALDQFMEAYCEMLIKYEQELTKPFKEAMLFLQRIECQFKSLTISSSDTAG-------CNEGGDRNGSSED-IDVHNNI-----IDPQAEDQELKGQLLRKYRGYLGSLKQEFTKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVVDPSHPHYYMENVVGNPF 1086
            ++KAKIMAHP Y  LLAAY++CQKVGAPPEV+ RL    A+AA   A    R    DP LDQFMEAYC ML KY +ELT+P  EAM FL+R+E Q  ++   +             +   +  GSSED +D          IDP+AED+ELK QLL+KY GYL SL+QEF+KK+KKGKLPKEARQ+LL WW  HYKWPYPSE++K+ALAESTGLDQKQINNWFINQRKRHWKPSEDM FV+++  HP       +  PF
Sbjct:   90 SIKAKIMAHPQYSALLAAYLDCQKVGAPPEVLERL---TATAAKLDARPPGRHDARDPELDQFMEAYCNMLAKYREELTRPIDEAMEFLKRVESQLDTIAGGAHGGGAGSARLLLADGKSECVGSSEDDMDPSGRENEPPEIDPRAEDKELKFQLLKKYSGYLSSLRQEFSKKKKKGKLPKEARQKLLHWWELHYKWPYPSETEKIALAESTGLDQKQINNWFINQRKRHWKPSEDMPFVMMEGFHPQNAAALYMDGPF 345          
BLAST of Phvul.003G081800.3 vs. DB:Swiss
Match: KNOSC_ORYSI (Homeobox protein knotted-1-like 12 OS=Oryza sativa subsp. indica OX=39946 GN=OSH15 PE=2 SV=2)

HSP 1 Score: 264.618 bits (675), Expect = 7.824e-85
Identity = 150/259 (57.92%), Postives = 180/259 (69.50%), Query Frame = 1
Query:  352 AVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASAAVTMAGGTAR-IGEDPALDQFMEAYCEMLIKYEQELTKPFKEAMLFLQRIECQFKSLTISSSDTAG-------CNEGGDRNGSSED-IDVHNNI-----IDPQAEDQELKGQLLRKYRGYLGSLKQEFTKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVVDPSHPHYYMENVVGNPF 1086
            ++KAKIMAHP Y  LLAAY++CQKVGAPPEV+ RL    A+AA   A    R    DP LDQFMEAYC ML KY +ELT+P  EAM FL+R+E Q  ++   +             +   +  GSSED +D          IDP+AED+ELK QLL+KY GYL SL+QEF+KK+KKGKLPKEARQ+LL WW  HYKWPYPSE++K+ALAESTGLDQKQINNWFINQRKRHWKPSEDM FV+++  HP       +  PF
Sbjct:   90 SIKAKIMAHPQYSALLAAYLDCQKVGAPPEVLERL---TATAAKLDARPPGRHDARDPELDQFMEAYCNMLAKYREELTRPIDEAMEFLKRVESQLDTIAGGAHGGGAGSARLLLADGKSECVGSSEDDMDPSGRENEPPEIDPRAEDKELKFQLLKKYSGYLSSLRQEFSKKKKKGKLPKEARQKLLHWWELHYKWPYPSETEKIALAESTGLDQKQINNWFINQRKRHWKPSEDMPFVMMEGFHPQNAAALYMDGPF 345          
The following BLAST results are available for this feature:
BLAST of Phvul.003G081800.3 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
HSBH1_SOYBN7.811e-15388.08Homeobox protein SBH1 OS=Glycine max OX=3847 GN=H1... [more]
LET6_SOLLC3.228e-12976.47Homeobox protein knotted-1-like LET6 OS=Solanum ly... [more]
STM_BRAOL3.551e-12974.04Homeobox protein SHOOT MERISTEMLESS OS=Brassica ol... [more]
STM_ARATH1.558e-12779.01Homeobox protein SHOOT MERISTEMLESS OS=Arabidopsis... [more]
KNAT1_ARATH3.127e-8959.92Homeobox protein knotted-1-like 1 OS=Arabidopsis t... [more]
KNOS6_ORYSJ1.307e-8758.87Homeobox protein knotted-1-like 6 OS=Oryza sativa ... [more]
KNOX3_HORVU2.865e-8760.08Homeobox protein KNOX3 OS=Hordeum vulgare OX=4513 ... [more]
KNAP2_MALDO1.232e-8559.76Homeobox protein knotted-1-like 2 OS=Malus domesti... [more]
KNOSC_ORYSJ7.824e-8557.92Homeobox protein knotted-1-like 12 OS=Oryza sativa... [more]
KNOSC_ORYSI7.824e-8557.92Homeobox protein knotted-1-like 12 OS=Oryza sativa... [more]
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InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005541KNOX2SMARTSM01256KNOX2_2coord: 166..217
e-value: 1.9E-25
score: 100.6
IPR005541KNOX2PFAMPF03791KNOX2coord: 170..216
e-value: 1.1E-21
score: 76.1
IPR005539ELK domainSMARTSM01188ELK_2coord: 253..274
e-value: 5.9E-7
score: 39.1
IPR005539ELK domainPFAMPF03789ELKcoord: 253..273
e-value: 2.8E-9
score: 36.8
IPR005539ELK domainPROSITEPS51213ELKcoord: 253..273
score: 11.139
IPR005540KNOX1SMARTSM01255KNOX1_2coord: 117..161
e-value: 8.0E-20
score: 81.9
IPR005540KNOX1PFAMPF03790KNOX1coord: 118..157
e-value: 1.6E-22
score: 79.0
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 275..340
e-value: 7.4E-13
score: 58.7
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 273..336
score: 13.07
IPR001356Homeobox domainCDDcd00086homeodomaincoord: 285..337
e-value: 8.15911E-13
score: 60.72
IPR008422Homeobox KN domainPFAMPF05920Homeobox_KNcoord: 293..332
e-value: 6.8E-17
score: 61.1
NoneNo IPR availableGENE3D1.10.10.60coord: 271..342
e-value: 2.6E-21
score: 76.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
IPR017970Homeobox, conserved sitePROSITEPS00027HOMEOBOX_1coord: 311..334
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 275..351

Sequences
The following sequences are available for this feature:

protein sequence of Phvul.003G081800.3_Pv_G19833_v2.1

>Phvul.003G081800.3_Pv_G19833_v2.1 ID=Phvul.003G081800.3_Pv_G19833_v2.1; Name=Phvul.003G081800.3_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=371bp
MEGGSNEASSVMGFGENTSSSGVCPMMMMPLVTSHHGGHHPLNPNLNNPN
RNPNVNTNTNTLFLPMPTTTNNHHPNRNSIHDNNHNTNTSELGYFMEIHS
RNTNNNNDGSSSSSSSSAVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVA
RLEEACASAAVTMAGGTARIGEDPALDQFMEAYCEMLIKYEQELTKPFKE
AMLFLQRIECQFKSLTISSSDTAGCNEGGDRNGSSEDIDVHNNIIDPQAE
DQELKGQLLRKYRGYLGSLKQEFTKKRKKGKLPKEARQQLLDWWSRHYKW
PYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVVDPSHP
HYYMENVVGNPFPDLSHTML*
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mRNA from alignment at Chr03:13510857..13515994-

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Phvul.003G081800.3_Pv_G19833_v2.1 ID=Phvul.003G081800.3_Pv_G19833_v2.1; Name=Phvul.003G081800.3; organism=Phaseolus vulgaris; type=mRNA; length=5138bp; location=Sequence derived from: Chr03:13510857..13515994- (Phaseolus vulgaris
CGTCATCCATCATCGTCAGTATTTACTTGTTGGCTCTCCCTCGATTTGAT CGTTCCTCTCTCTCTCTCTCTTCTGTAGAAGTGAGATTTGAGAAAGAATT GCGCTGTTTCTTTCTCTCTCCTGCTTTTCTTTGCCAGTGGCGCAGTGCAG GAAACGAGGGGGAGAGTTTCATTGGGAAGGTAAAATCCACCCTTTCTTTG CACCATTCCCTCGGCCATTTACATCACCATCCACCACTCTCTCCTTTTCT TCTACTACAACAAACCCCAGTCAGTTTATGCGTGCATCTTTCTCTTTTTT TTTCTCTCTCTCTCTCTACTCATGCTCCAGTGAATGCTTCAATGGGTGGT GGTAAGGTTTATAAGAAAGACCCAACACCCGTTTTTCCAAGCAAAATTGT GTAGACTTTGTCAGGAAAGCCACAGTAGAGAAAAAAAACACAACCCTCTT CCACTTCGTGTATCAGACAACAACTACAGCACCAAGATCACTGTTTTGGA TTTTTCTGTAAAAGGCCTGAAACTTGTAGCATAAAATCCGGGGGAGCCCT GAAGACAACTCATCTTGGGAGCAAAAAGTAGAGGGAGAGGGAAAAAGGAG AGGTGGGCTTAGTTTTTTTTTCCCTCTTCATGTGATAAGTTGAGGTAGTA AATTTTGAATATAATATAGGTAGGGGAAACGGATAAGAGTGTGGATGGGT GTGTCTGTGAATTGGTGAGGAGGCAATGGAGGGTGGTTCTAACGAGGCCT CCAGTGTGATGGGTTTTGGAGAGAATACAAGTAGTAGTGGGGTTTGTCCA ATGATGATGATGCCTTTAGTGACTTCTCATCATGGTGGTCATCATCCATT AAATCCTAATCTTAATAATCCTAATCGTAATCCTAATGTAAACACAAACA CAAATACTCTCTTCCTTCCCATGCCTACTACTACTAATAATCACCACCCA AACCGCAATAGCATCCACGACAATAACCACAACACCAACACCTCTGAGTT AGGGTATTTCATGGAGATCCACAGCCGCAACACGAACAACAACAACGATG GAAGTTCCTCTTCTTCTTCTTCTTCTGCTGTGAAGGCCAAGATCATGGCC CATCCTCATTATCACCGTCTCTTGGCAGCCTACGTCAATTGTCAAAAGGT GAGGGAAAGGAAAAACATAAAAGGTTAACCTTAACTCATGATATCCATTG ACCCAACGTTCCCCACTTAGGTGAAAAGTAGATAAATATAGACAGCTAGA GTGATTGAAAACGATGCTTAATTAATTTATTCAACTCGTTAACACTCTTT CCTTAGTAAGTTCGGATCTGAGTTGTGACATGTGAAGTAATTTCTTTATT AAAGTAAGTCATCCTTTCATACTAGTGACGAACTACGTATTATTATTATA TTTTAAAGAAAAAGAAGTTGTAGTAGAAGTATAAACCCTTTAAAGATGGC TAGCTTAACTATTAATGACAAGCATGCTATTTGGTCGTAAGGGTTTACTC ATACAGTTGATGCACGTACTTAGCAGGTTGGGGCGCCACCTGAAGTGGTG GCAAGGCTAGAAGAAGCATGTGCATCTGCTGCAGTGACTATGGCAGGTGG AACGGCTAGAATCGGTGAGGATCCGGCGCTAGACCAGTTCATGGAGGCTT ACTGTGAGATGCTGATCAAGTACGAGCAAGAGCTCACCAAACCCTTCAAG GAAGCCATGCTCTTCCTTCAAAGGATCGAGTGCCAGTTCAAATCTCTTAC CATTTCTTCTTCCGACACTGGTGATTCATAACCCCTTCTCCGACTCCAGC TTTGATTTCTATGTTTCTTATCCTTTTAATGTTTCTTTTGTTGGGTGTTT GCCTGTTTGATGTTAATTTATTTAATTGAATATCCTTGCATGACTGTGTT TTCGAGGTTGTAGGTTCTGGGAAAGTTGTTAAAGAACTTCTTGTTCTTGA ATTTAACCGAGTGCTTGCTTCATCTACTTTTTATGATAAAAGTTGAAATA ATTTTCCTACCGTTAAGTATTTGTTTTCATTATGAATGATGTTTAATTGA TAAAGAGTGTTTGTCTTTTCTTTGTTTAAGAAGACTTGAAATTCTGGCAT GGGCTGTCAAAATGTGAATGGGTGGTACCTATCTGTATAACATCTTATCG GTGTTAGTGCATTGAATAAACTTTTGTTGGCTAAATTCTGCCCTTCCTGC GTGCCCTGATGATATTGACACAATTTCAGCTTTTTTATTTTTGGAAATAC AAGTCTTTTCCTAAATTCTTCTGTGTGTTTCCCTATTTGATTTTACTGCT CTCTCTACTTGGCTGTTGTTTGATTTTGCATCTGAGTGTGGATAAAACTC ATGCTTAAAGTAAATCCAACGACAGAGGGAGTGGCAGCTGGAATGTGAAT TTGGTTTTAGTGGAGAGAGTCTAGGGTTTCATTGAACTGGTGCTCAAGAG TCAAGAGTGTTAATTGCGAGGTTGTTGGTGACTAGGTCGTTTCGGAATGT CATGCTCAGTGCAGTCAAACAAATGGCTTTAAAGAGGCTCTTAGGGGCAG TTGCAGGAGATATTTACCAAACAATGTTCAATAATATATAATATTACATT AAAGAAGGCCTTTTACACTACATTTTATCAAACAAAAATAAGTAGTTTTA GCTATTCACCATCATTTTGCTCTACAACAAATCATGATTTTGCTAAACTA ACTTTTAATAGTTTATATGCTCATAAATTCATGCGTTTTAGTTAGGTGGC CTTTGTTATTCTCATAATTGTTGTATCTATGCGTATTGTCATTATTTATC ATGTGTTTGTGTCCGACCGTGCAGTGCATATTGCCGTGGTTACTATAACT GTGTCTTTGATATGATAAAACTACACATTGGTGTGTCTATAACTGGAAAT GGATGGTCACTTGCCATATGTACGTCTACATGGTGCTAACATTGCTGATT GAAATTAGCATTTGAATGTGACAACCATCGTTATTTTTCAAACTTTGCTG CTTGTGCGTTGATGACCACAGTGAAAAACAGCAGGAAACTTTTGTGTACT GCCTTAGATATAATTACAGCCGAGATTTCTTTAATATCAATCCATTTATG TATGAGCCCAAAGTAGTGCATGGTCTTCTGTTGATGTAAAGGAACAAATT TAACGTTCTTGGTCACAAATTTTTACGTTCTTGGTCCCCCGATTGTTAGT AGTTCATGGGTTTTTTCTGGGTAGAGGGTCCCTGTGCAATTTCATTTTTT GTAGGTGTTGAACAATTGAACTTTTTCAGTGGATTCAATTATTATTGTTA CTACTACTTCTGTTATTGCTATTAATTTCTTGATGGTTTTATTTCTTCCA TGACTAATCGCAATGTCTTTTTGCTACTATAGTTTGGCCCCTCCATGAAC GTGGCTGTATGAATATTGTTGCATGTGATTTTAGATAAATATGACCACAA TTACTGTGGTGTTTTGCTTTAATTATGAAGTTTTTGAAGTAATTCATTAT GCACCCCCTTTTCTTCCATGTCTTATATTTAATCTTTTATTCTTTGCTGA TGAAAAGAAACAGTGGCCTCATGCTGCAAAGAGTGAAATTCCATTTTTGC TTGATAAGGTTTAATATGATTGTTAAATTAGTCTTACTCAAGTTAAATCG GTGAAGTAGGCAGTGACATTTAAAGACTGTAGTCCTCTTTTCTGACGTTG TTGGGTTTAGGTATTTACTGTCTCAAGGTTGGATATGGAGACACTGTCTT TATTAAAAATACGGTTGGATTCATTTCTTATTGGATCATTTTAAAATCTG ACTTGTGTTCATCATTCATTGTTTTCTAATTTATCTAAGATGTACTGTTA GTCATCCTTTATGTAATCGTACCCCGTAGTCAAAACCTGCACCAAACACA AGTTAGTGGTTTGATAGTTAAATATATCCTGTATTTGCTACATTAAGCTT TTCATTGTTGTATAAATTTGCTTGTCATGGAGAGTTACGCTTTAATAATA ACTTAATAAATGCTAGCAAATTTGACTGAACTTTACTATAAACAAGCCAT TTTGTTGGTTCCATAGCACCATATATTTTAGTCTCGTTAGAAATTTTCGT TATAAAGTTTGTTAGTTGATAAATTACTAGATGGTTTGGGATCACTTGCT TGGTGTCAGCTAATGTTTACTGACAAGGTAATCAAATGTTGTTAATTATT TCATCTTAAATTTAAAGAATTCAATTGAGTGAGATTGGTGGACACCATAA GACAGATGGTGGTATAAGAGCATTATAATTTCTGGGGTTCATGTTATAAA CGCTTTACATTAGTAACTTTGGTAAGAAATTGAATGGAGAATTCACGTAC CTTTTTCTTTCTAAGAAAGATGGTGTTCTTTGTTTTCTAATTGGGTTGAA CAGCAGGTTGTAATGAAGGTGGTGATAGGAATGGATCATCTGAAGATATT GATGTGCACAACAACATAATAGATCCACAGGCAGAGGACCAAGAACTGAA AGGTCAACTCTTGCGTAAGTACCGTGGATACCTAGGTAGTTTGAAGCAGG AATTCACGAAGAAGAGAAAAAAGGGCAAGTTGCCCAAAGAAGCAAGGCAA CAATTACTTGATTGGTGGAGCAGACACTACAAATGGCCTTACCCATCTGT ATGTTGCATCTATCACTTTATTTTTAGTTATATGTGAAACATGTTATTGT GGAAATAACTTAGCAGGTGTTTTTGTACCTGCTTAATTTTGATGCATGAA CAGGAATCTCAGAAGCTGGCACTTGCAGAGTCAACAGGGCTGGATCAGAA GCAAATTAACAACTGGTTTATTAATCAAAGGAAACGACACTGGAAGCCTT CGGAGGACATGCAATTTGTGGTGGTTGATCCAAGCCATCCACACTACTAC ATGGAAAATGTTGTGGGCAATCCCTTTCCCGATCTCTCTCACACAATGCT CTAAGAAACGTTTTGGTGCCTGTGTGCTCTAAACCTATATGTGTTCTGTC AAAAGGCAAGGCGTTATTCATATATAATAAGTATGTTACTTTAGTCACTA AGTAACCATATTTACACACTAAAATATGTCTCAAATGTTAATCTAAAAGG ATTAACCTTTTGCACTTGTAATATTAAGTGGGAATGAA
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Coding sequence (CDS) from alignment at Chr03:13510857..13515994-

>Phvul.003G081800.3_Pv_G19833_v2.1 ID=Phvul.003G081800.3_Pv_G19833_v2.1; Name=Phvul.003G081800.3; organism=Phaseolus vulgaris; type=CDS; length=1113bp; location=Sequence derived from: Chr03:13510857..13515994- (Phaseolus vulgaris
ATGGAGGGTGGTTCTAACGAGGCCTCCAGTGTGATGGGTTTTGGAGAGAA
TACAAGTAGTAGTGGGGTTTGTCCAATGATGATGATGCCTTTAGTGACTT
CTCATCATGGTGGTCATCATCCATTAAATCCTAATCTTAATAATCCTAAT
CGTAATCCTAATGTAAACACAAACACAAATACTCTCTTCCTTCCCATGCC
TACTACTACTAATAATCACCACCCAAACCGCAATAGCATCCACGACAATA
ACCACAACACCAACACCTCTGAGTTAGGGTATTTCATGGAGATCCACAGC
CGCAACACGAACAACAACAACGATGGAAGTTCCTCTTCTTCTTCTTCTTC
TGCTGTGAAGGCCAAGATCATGGCCCATCCTCATTATCACCGTCTCTTGG
CAGCCTACGTCAATTGTCAAAAGGTTGGGGCGCCACCTGAAGTGGTGGCA
AGGCTAGAAGAAGCATGTGCATCTGCTGCAGTGACTATGGCAGGTGGAAC
GGCTAGAATCGGTGAGGATCCGGCGCTAGACCAGTTCATGGAGGCTTACT
GTGAGATGCTGATCAAGTACGAGCAAGAGCTCACCAAACCCTTCAAGGAA
GCCATGCTCTTCCTTCAAAGGATCGAGTGCCAGTTCAAATCTCTTACCAT
TTCTTCTTCCGACACTGCAGGTTGTAATGAAGGTGGTGATAGGAATGGAT
CATCTGAAGATATTGATGTGCACAACAACATAATAGATCCACAGGCAGAG
GACCAAGAACTGAAAGGTCAACTCTTGCGTAAGTACCGTGGATACCTAGG
TAGTTTGAAGCAGGAATTCACGAAGAAGAGAAAAAAGGGCAAGTTGCCCA
AAGAAGCAAGGCAACAATTACTTGATTGGTGGAGCAGACACTACAAATGG
CCTTACCCATCTGAATCTCAGAAGCTGGCACTTGCAGAGTCAACAGGGCT
GGATCAGAAGCAAATTAACAACTGGTTTATTAATCAAAGGAAACGACACT
GGAAGCCTTCGGAGGACATGCAATTTGTGGTGGTTGATCCAAGCCATCCA
CACTACTACATGGAAAATGTTGTGGGCAATCCCTTTCCCGATCTCTCTCA
CACAATGCTCTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR005541KNOX2
IPR005539ELK_dom
IPR005540KNOX1
IPR001356HD
IPR008422KN_HD
IPR017970Homeobox_CS
IPR009057Homeodomain-like_sf
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of DNA-templated transcription