Phvul.003G081800.3
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Phvul.003G081800.3 vs. DB:Swiss
Match: HSBH1_SOYBN (Homeobox protein SBH1 OS=Glycine max OX=3847 GN=H1 PE=2 SV=1) HSP 1 Score: 438.728 bits (1127), Expect = 7.811e-153 Identity = 229/260 (88.08%), Postives = 241/260 (92.69%), Query Frame = 1 Query: 352 AVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASAAVTMAGGTAR-----IGEDPALDQFMEAYCEMLIKYEQELTKPFKEAMLFLQRIECQFKSLTISSSDTAGCNEGGDRNGSSE-DIDVHNNIIDPQAEDQELKGQLLRKYRGYLGSLKQEFTKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVVDPSHPHYYMENVVGNPFP-DLSHTML 1110 AVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASAA TMAGG A IGEDPALDQFMEAYCEML KYEQEL+KP KEAMLFLQRIECQFK+LTISSSD A NEGGDRNGSSE D+D+HN +IDPQAED++LKGQLLRKY GYLGSLKQEF KKRKKGKLPKEARQQLL+WW+RHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVV+DPSHPHYYM+NV+GNPFP DLSH ML Sbjct: 123 AVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASAA-TMAGGDAAAGSSCIGEDPALDQFMEAYCEMLTKYEQELSKPLKEAMLFLQRIECQFKNLTISSSDFAS-NEGGDRNGSSEEDVDLHN-MIDPQAEDRDLKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWNRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDPSHPHYYMDNVLGNPFPMDLSHPML 379
BLAST of Phvul.003G081800.3 vs. DB:Swiss
Match: LET6_SOLLC (Homeobox protein knotted-1-like LET6 OS=Solanum lycopersicum OX=4081 GN=LET6 PE=2 SV=1) HSP 1 Score: 377.867 bits (969), Expect = 3.228e-129 Identity = 195/255 (76.47%), Postives = 221/255 (86.67%), Query Frame = 1 Query: 370 MAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASAAV----TMAGGTARIGEDPALDQFMEAYCEMLIKYEQELTKPFKEAMLFLQRIECQFKSLTIS--SSDTAGCNEGGDRNGSS-EDIDVHNNIIDPQAEDQELKGQLLRKYRGYLGSLKQEFTKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVVDPSHPHYYMENVVGNPFP-DLSHTML 1110 MAHPHYHRLL AY+NCQK+GAPPEVVARLEE CA++A + + G IGEDPALDQFMEAYCEML KYEQEL+KPFKEAM+FL RIECQFK+LT++ SS + E DRNGSS E++DV+N+ IDPQAED+ELKGQLLRKY GYLGSLKQEF KKRKKGKLPKEARQQL+DWW RH KWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVV+D +HPHYYM+NV+ N FP D++ ++L Sbjct: 101 MAHPHYHRLLTAYLNCQKIGAPPEVVARLEEICATSATMGRSSSSSGGGIIGEDPALDQFMEAYCEMLTKYEQELSKPFKEAMVFLSRIECQFKALTLAPNSSHESALGEAMDRNGSSDEEVDVNNSFIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLVDWWLRHIKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYMDNVLANHFPMDMTPSLL 355
BLAST of Phvul.003G081800.3 vs. DB:Swiss
Match: STM_BRAOL (Homeobox protein SHOOT MERISTEMLESS OS=Brassica oleracea OX=3712 GN=STM PE=2 SV=1) HSP 1 Score: 378.637 bits (971), Expect = 3.551e-129 Identity = 211/285 (74.04%), Postives = 234/285 (82.11%), Query Frame = 1 Query: 283 FMEIHXXXXXXXXXXXXXXXXXXAVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASAAVTMA--GGTARIGEDPALDQFMEAYCEMLIKYEQELTKPFKEAMLFLQRIECQFKSLTISSSDTAGCNEGG---DRNGSSED-IDVHNNIIDPQAEDQELKGQLLRKYRGYLGSLKQEFTKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVVDPSHP-HYYMENVVGNPFP--DLSHTML 1110 FMEI+ +N S SS VKAKIMAHPHYHRLL AYVNCQKVGAPPEV ARLEE C+SAA A G T +GEDP LDQFMEAYCEML+KYEQEL+KPFKEAM+FLQ +ECQFKSL++SS + G E + NGSSE+ +D++N +DPQAED+ELKGQLLRKY GYLGSLKQEF KKRKKGKLPKEARQQLLDWWSRHYKWPYPSE QKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVV+D +HP HY+M NV+GNPFP +S TML Sbjct: 99 FMEINHQNELLAGGLQSPVLSSLLVKAKIMAHPHYHRLLLAYVNCQKVGAPPEVQARLEETCSSAAAAAASMGPTGSLGEDPGLDQFMEAYCEMLVKYEQELSKPFKEAMVFLQHVECQFKSLSLSSPSSLGYGEAAIERNNNGSSEEEVDMNNEFVDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSEQQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDATHPLHYFMGNVLGNPFPIDHISGTML 383
BLAST of Phvul.003G081800.3 vs. DB:Swiss
Match: STM_ARATH (Homeobox protein SHOOT MERISTEMLESS OS=Arabidopsis thaliana OX=3702 GN=STM PE=1 SV=2) HSP 1 Score: 374.4 bits (960), Expect = 1.558e-127 Identity = 207/262 (79.01%), Postives = 228/262 (87.02%), Query Frame = 1 Query: 355 VKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASAAVTMA--GGTARIGEDPALDQFMEAYCEMLIKYEQELTKPFKEAMLFLQRIECQFKSLTISSSDTA-GCNEGG-DRN---GSSEDIDVHNNIIDPQAEDQELKGQLLRKYRGYLGSLKQEFTKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVVDPSHP-HYYMENVVGNPFP--DLSHTML 1110 VKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEAC+SAA A G T +GEDP LDQFMEAYCEML+KYEQEL+KPFKEAM+FLQR+ECQFKSL++SS + G E DRN S E++D++N +DPQAED+ELKGQLLRKY GYLGSLKQEF KKRKKGKLPKEARQQLLDWWSRHYKWPYPSE QKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVV+D +HP HY+M+NV+GNPFP +S TML Sbjct: 121 VKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACSSAAAAAASMGPTGCLGEDPGLDQFMEAYCEMLVKYEQELSKPFKEAMVFLQRVECQFKSLSLSSPSSFSGYGETAIDRNNNGSSEEEVDMNNEFVDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSEQQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDATHPHHYFMDNVLGNPFPMDHISSTML 382
BLAST of Phvul.003G081800.3 vs. DB:Swiss
Match: KNAT1_ARATH (Homeobox protein knotted-1-like 1 OS=Arabidopsis thaliana OX=3702 GN=KNAT1 PE=1 SV=1) HSP 1 Score: 277.33 bits (708), Expect = 3.127e-89 Identity = 148/247 (59.92%), Postives = 176/247 (71.26%), Query Frame = 1 Query: 352 AVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASAAVTMAGGTARIG---EDPALDQFMEAYCEMLIKYEQELTKPFKEAMLFLQRIECQFKSLTISSSDTAGCNEGGDRNGSSEDIDVHNNI--------IDPQAEDQELKGQLLRKYRGYLGSLKQEFTKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVVDP-SHPHY 1056 A+KAKI+AHPHY LL AY++CQK+GAPP+VV R+ A T + DP LDQFMEAYC+ML+KY +ELT+P +EAM F++RIE Q L S +G N S D + NN IDP+AED+ELK LL+KY GYL SLKQE +KK+KKGKLPKEARQ+LL WW HYKWPYPSES+K+ALAESTGLDQKQINNWFINQRKRHWKPSEDMQF+V+D HPH+ Sbjct: 133 AMKAKIIAHPHYSTLLQAYLDCQKIGAPPDVVDRITAARQDFEARQQRSTPSVSASSRDPELDQFMEAYCDMLVKYREELTRPIQEAMEFIRRIESQLSMLCQSPIHILNNPDGKSDNMGSSDEEQENNSGGETELPEIDPRAEDRELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKEARQKLLTWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLQHPHH 379
BLAST of Phvul.003G081800.3 vs. DB:Swiss
Match: KNOS6_ORYSJ (Homeobox protein knotted-1-like 6 OS=Oryza sativa subsp. japonica OX=39947 GN=OSH1 PE=1 SV=2) HSP 1 Score: 271.937 bits (694), Expect = 1.307e-87 Identity = 146/248 (58.87%), Postives = 177/248 (71.37%), Query Frame = 1 Query: 352 AVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASAAVT--MAGGTARIGEDPALDQFMEAYCEMLIKYEQELTKPFKEAMLFLQRIECQFKSLTISSSDTAGCNEGG----DRNGSSEDIDVHNNIIDPQAEDQELKGQLLRKYRGYLGSLKQEFTKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVVDPSHP----HYYME 1065 A+KAKI++HPHY LLAAY++CQKVGAPPEV ARL + A G +P LDQFMEAY EML+KY +ELT+P +EAM FL+R+E Q +L+IS G D+ GS + ++ ID DQELK LL+KY GYL SLKQE +KK+KKGKLPK+ARQQLL+WW HYKWPYPSESQK+ALAESTGLD KQINNWFINQRKRHWKPS++MQFV++D HP +YM+ Sbjct: 103 AIKAKIISHPHYSSLLAAYLDCQKVGAPPEVAARLTAVAQDLELRQRTALGVLGAATEPELDQFMEAYHEMLVKYREELTRPLQEAMEFLRRVETQLNTLSISGRSLRNILSSGSSEEDQEGSGGETELPE--IDAHGVDQELKHHLLKKYSGYLSSLKQELSKKKKKGKLPKDARQQLLNWWELHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSDEMQFVMMDGYHPTNAAAFYMD 348
BLAST of Phvul.003G081800.3 vs. DB:Swiss
Match: KNOX3_HORVU (Homeobox protein KNOX3 OS=Hordeum vulgare OX=4513 GN=KNOX3 PE=1 SV=1) HSP 1 Score: 271.166 bits (692), Expect = 2.865e-87 Identity = 149/248 (60.08%), Postives = 177/248 (71.37%), Query Frame = 1 Query: 352 AVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASAAV---TMAGGTARIGEDPALDQFMEAYCEMLIKYEQELTKPFKEAMLFLQRIECQFKSLTISSSDTAGCNEGG----DRNGSSEDIDVHNNIIDPQAEDQELKGQLLRKYRGYLGSLKQEFTKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVVDPSHP---HYYME 1065 A+KAKI++HPHY LLAAY++CQKVGAPPEV ARL + T GG E P LDQFMEAY EML+KY +ELT+P +EAM FL+R+E Q SL+IS G D+ GS + ++ ID DQELK LL+KY GYL SLKQE +KK+KKGKLPKEARQQLL WW HYKWPYPSESQK+ALAESTGLD KQINNWFINQRKRHWKP+++MQFV++D HP +YM+ Sbjct: 107 AIKAKIISHPHYSSLLAAYLDCQKVGAPPEVSARLTAVAQDLELRQRTALGGLGTATE-PELDQFMEAYHEMLVKYREELTRPLQEAMEFLRRVETQLNSLSISGRSLRNILSTGSSEEDQEGSGGETELPE--IDAHGVDQELKHHLLKKYSGYLSSLKQELSKKKKKGKLPKEARQQLLSWWEMHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPTDEMQFVMMDAYHPPNAAFYMD 351
BLAST of Phvul.003G081800.3 vs. DB:Swiss
Match: KNAP2_MALDO (Homeobox protein knotted-1-like 2 OS=Malus domestica OX=3750 PE=2 SV=1) HSP 1 Score: 268.085 bits (684), Expect = 1.232e-85 Identity = 147/246 (59.76%), Postives = 175/246 (71.14%), Query Frame = 1 Query: 352 AVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACAS-AAVTMAGGTAR-IGEDPALDQFMEAYCEMLIKYEQELTKPFKEAMLFLQRIECQFK---------SLTISSSDTAGCNEGGDRNGSSEDIDVHNNI--IDPQAEDQELKGQLLRKYRGYLGSLKQEFTKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVVDPSHP 1050 A+KAKI+AHP Y LL AY++CQ+VGAP +VVARL A A + GT+R +DP LDQFMEAY +ML+KY +ELT+P +EAM F++RIE Q L I S C G E+ + IDP+AED+ELK LLRKY GYL SLKQE +KK+KKGKLPK+ARQ+LL WW HYKWPYPSES+K+ALAESTGLDQKQINNWFINQRKRHWKPSEDMQF+V+D HP Sbjct: 131 AIKAKIIAHPQYSNLLEAYMDCQRVGAPSDVVARLSVARQEFEARQRSSGTSRETSKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMLGNNNNAPPLRIFSPSEDKCEGIGSSEEEQENSGGETEVPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLSWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHP 376
BLAST of Phvul.003G081800.3 vs. DB:Swiss
Match: KNOSC_ORYSJ (Homeobox protein knotted-1-like 12 OS=Oryza sativa subsp. japonica OX=39947 GN=OSH15 PE=2 SV=1) HSP 1 Score: 264.618 bits (675), Expect = 7.824e-85 Identity = 150/259 (57.92%), Postives = 180/259 (69.50%), Query Frame = 1 Query: 352 AVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASAAVTMAGGTAR-IGEDPALDQFMEAYCEMLIKYEQELTKPFKEAMLFLQRIECQFKSLTISSSDTAG-------CNEGGDRNGSSED-IDVHNNI-----IDPQAEDQELKGQLLRKYRGYLGSLKQEFTKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVVDPSHPHYYMENVVGNPF 1086 ++KAKIMAHP Y LLAAY++CQKVGAPPEV+ RL A+AA A R DP LDQFMEAYC ML KY +ELT+P EAM FL+R+E Q ++ + + + GSSED +D IDP+AED+ELK QLL+KY GYL SL+QEF+KK+KKGKLPKEARQ+LL WW HYKWPYPSE++K+ALAESTGLDQKQINNWFINQRKRHWKPSEDM FV+++ HP + PF Sbjct: 90 SIKAKIMAHPQYSALLAAYLDCQKVGAPPEVLERL---TATAAKLDARPPGRHDARDPELDQFMEAYCNMLAKYREELTRPIDEAMEFLKRVESQLDTIAGGAHGGGAGSARLLLADGKSECVGSSEDDMDPSGRENEPPEIDPRAEDKELKFQLLKKYSGYLSSLRQEFSKKKKKGKLPKEARQKLLHWWELHYKWPYPSETEKIALAESTGLDQKQINNWFINQRKRHWKPSEDMPFVMMEGFHPQNAAALYMDGPF 345
BLAST of Phvul.003G081800.3 vs. DB:Swiss
Match: KNOSC_ORYSI (Homeobox protein knotted-1-like 12 OS=Oryza sativa subsp. indica OX=39946 GN=OSH15 PE=2 SV=2) HSP 1 Score: 264.618 bits (675), Expect = 7.824e-85 Identity = 150/259 (57.92%), Postives = 180/259 (69.50%), Query Frame = 1 Query: 352 AVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASAAVTMAGGTAR-IGEDPALDQFMEAYCEMLIKYEQELTKPFKEAMLFLQRIECQFKSLTISSSDTAG-------CNEGGDRNGSSED-IDVHNNI-----IDPQAEDQELKGQLLRKYRGYLGSLKQEFTKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVVDPSHPHYYMENVVGNPF 1086 ++KAKIMAHP Y LLAAY++CQKVGAPPEV+ RL A+AA A R DP LDQFMEAYC ML KY +ELT+P EAM FL+R+E Q ++ + + + GSSED +D IDP+AED+ELK QLL+KY GYL SL+QEF+KK+KKGKLPKEARQ+LL WW HYKWPYPSE++K+ALAESTGLDQKQINNWFINQRKRHWKPSEDM FV+++ HP + PF Sbjct: 90 SIKAKIMAHPQYSALLAAYLDCQKVGAPPEVLERL---TATAAKLDARPPGRHDARDPELDQFMEAYCNMLAKYREELTRPIDEAMEFLKRVESQLDTIAGGAHGGGAGSARLLLADGKSECVGSSEDDMDPSGRENEPPEIDPRAEDKELKFQLLKKYSGYLSSLRQEFSKKKKKGKLPKEARQKLLHWWELHYKWPYPSETEKIALAESTGLDQKQINNWFINQRKRHWKPSEDMPFVMMEGFHPQNAAALYMDGPF 345 The following BLAST results are available for this feature:
BLAST of Phvul.003G081800.3 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
Sequences
The
following sequences are available for this feature:
protein sequence of Phvul.003G081800.3_Pv_G19833_v2.1 >Phvul.003G081800.3_Pv_G19833_v2.1 ID=Phvul.003G081800.3_Pv_G19833_v2.1; Name=Phvul.003G081800.3_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=371bpback to top mRNA from alignment at Chr03:13510857..13515994- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Phvul.003G081800.3_Pv_G19833_v2.1 ID=Phvul.003G081800.3_Pv_G19833_v2.1; Name=Phvul.003G081800.3; organism=Phaseolus vulgaris; type=mRNA; length=5138bp; location=Sequence derived from: Chr03:13510857..13515994- (Phaseolus vulgarisback to top Coding sequence (CDS) from alignment at Chr03:13510857..13515994- >Phvul.003G081800.3_Pv_G19833_v2.1 ID=Phvul.003G081800.3_Pv_G19833_v2.1; Name=Phvul.003G081800.3; organism=Phaseolus vulgaris; type=CDS; length=1113bp; location=Sequence derived from: Chr03:13510857..13515994- (Phaseolus vulgarisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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