Phvul.003G251800.3
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Phvul.003G251800.3 vs. DB:Swiss
Match: ATB40_ARATH (Homeobox-leucine zipper protein ATHB-40 OS=Arabidopsis thaliana OX=3702 GN=ATHB-40 PE=2 SV=3) HSP 1 Score: 144.05 bits (362), Expect = 8.833e-43 Identity = 70/137 (51.09%), Postives = 94/137 (68.61%), Query Frame = 1 Query: 1 MNHRAVEAHMRLFSHQYPTAFTQLTPPQQAK-PRRKRNK--------NGVMGSTKKRKLSAEQVNLLEKNFCIQHKLQSERKDQLAFELGMDPRQVAVWFQNRRFRWKTKKLEEEYSNLKNLHETTLLQKCHLQTRV 384 MN+ + +M S YP +TQ+ P + K P+R+R K +G G +KRKL+ EQVN+LE +F +HKL+SERKD+LA ELG+DPRQVAVWFQNRR RWK K+LEEEY+ LKN H+ ++ KC L++ V Sbjct: 1 MNYTVDDQNMAFISQLYPDVYTQIVQPGEVKQPKRRRKKTKGSVASADGGNGLFRKRKLTDEQVNMLEMSFGDEHKLESERKDRLAAELGLDPRQVAVWFQNRRARWKNKRLEEEYNKLKNSHDNVVVDKCRLESEV 137
BLAST of Phvul.003G251800.3 vs. DB:Swiss
Match: ATB21_ARATH (Homeobox-leucine zipper protein ATHB-21 OS=Arabidopsis thaliana OX=3702 GN=ATHB-21 PE=2 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 2.813e-40 Identity = 75/143 (52.45%), Postives = 97/143 (67.83%), Query Frame = 1 Query: 1 MNHRAVEAH-MRLFSHQYPTAFTQLTPPQ--QAKP--RRKRNKNGVM----------GSTKKRKLSAEQVNLLEKNFCIQHKLQSERKDQLAFELGMDPRQVAVWFQNRRFRWKTKKLEEEYSNLKNLHETTLLQKCHLQTRV 384 MN++ V+ H + L S YP +T L P Q +AKP RRKR V+ G +KRKLS EQV +LE +F HKL+SERKD+LA ELG+DPRQVAVWFQNRR RWK K++E+EY+ LKN +ETT+++KC L + V Sbjct: 1 MNNQNVDDHNLLLISQLYPNVYTPLVPQQGGEAKPTRRRKRKSKSVVVAEEGENEGNGWFRKRKLSDEQVRMLEISFEDDHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKRVEDEYTKLKNAYETTVVEKCRLDSEV 143
BLAST of Phvul.003G251800.3 vs. DB:Swiss
Match: ATB53_ARATH (Homeobox-leucine zipper protein ATHB-53 OS=Arabidopsis thaliana OX=3702 GN=ATHB-53 PE=2 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 8.498e-33 Identity = 56/104 (53.85%), Postives = 81/104 (77.88%), Query Frame = 1 Query: 121 VMGSTKKRKLSAEQVNLLEKNFCIQHKLQSERKDQLAFELGMDPRQVAVWFQNRRFRWKTKKLEEEYSNLKNLHETTLLQKCHLQTRV---SSSLTESQNQERR 423 + G +KRKL+ EQVN+LE +F +HKL+S RK+++A ELG+DPRQVAVWFQNRR RWK KKLEEEY+ LKN H+ +L +C L++++ + L+E+Q++ R+ Sbjct: 66 IGGMLRKRKLTDEQVNMLEYSFGNEHKLESGRKEKIAGELGLDPRQVAVWFQNRRARWKNKKLEEEYAKLKNHHDNVVLGQCQLESQILKLTEQLSEAQSEIRK 169
BLAST of Phvul.003G251800.3 vs. DB:Swiss
Match: HOX14_ORYSJ (Homeobox-leucine zipper protein HOX14 OS=Oryza sativa subsp. japonica OX=39947 GN=HOX14 PE=2 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.655e-25 Identity = 49/83 (59.04%), Postives = 63/83 (75.90%), Query Frame = 1 Query: 136 KKRKLSAEQVNLLEKNFCIQHKLQSERKDQLAFELGMDPRQVAVWFQNRRFRWKTKKLEEEYSNLKNLHETTLLQKCHLQTRV 384 KKR+LS EQV +LE +F + KL++ RK LA ELG+DP+QVAVWFQNRR R K+K LEEE+S LK+ H+ +L KCHL+ V Sbjct: 62 KKRRLSDEQVEMLELSFREERKLETGRKVHLASELGLDPKQVAVWFQNRRARHKSKLLEEEFSKLKHAHDAAILHKCHLENEV 144
BLAST of Phvul.003G251800.3 vs. DB:Swiss
Match: HOX14_ORYSI (Homeobox-leucine zipper protein HOX14 OS=Oryza sativa subsp. indica OX=39946 GN=HOX14 PE=2 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.799e-25 Identity = 49/83 (59.04%), Postives = 63/83 (75.90%), Query Frame = 1 Query: 136 KKRKLSAEQVNLLEKNFCIQHKLQSERKDQLAFELGMDPRQVAVWFQNRRFRWKTKKLEEEYSNLKNLHETTLLQKCHLQTRV 384 KKR+LS EQV +LE +F + KL++ RK LA ELG+DP+QVAVWFQNRR R K+K LEEE+S LK+ H+ +L KCHL+ V Sbjct: 62 KKRRLSDEQVEMLELSFREERKLETGRKVHLASELGLDPKQVAVWFQNRRARHKSKLLEEEFSKLKHAHDAAILHKCHLENEV 144
BLAST of Phvul.003G251800.3 vs. DB:Swiss
Match: HOX12_ORYSJ (Homeobox-leucine zipper protein HOX12 OS=Oryza sativa subsp. japonica OX=39947 GN=HOX12 PE=2 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 9.742e-24 Identity = 46/92 (50.00%), Postives = 65/92 (70.65%), Query Frame = 1 Query: 109 NKNGVMGSTKKRKLSAEQVNLLEKNFCIQHKLQSERKDQLAFELGMDPRQVAVWFQNRRFRWKTKKLEEEYSNLKNLHETTLLQKCHLQTRV 384 ++G KKR+LS EQ LE +F + KL++ RK QLA ELG+D +QVAVWFQNRR R K+K +EEE++ L++ H+ +LQ CHL+T + Sbjct: 52 GESGGDEQAKKRRLSDEQARFLEMSFKKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHKSKLMEEEFAKLRSAHDAVVLQNCHLETEL 143
BLAST of Phvul.003G251800.3 vs. DB:Swiss
Match: HOX12_ORYSI (Homeobox-leucine zipper protein HOX12 OS=Oryza sativa subsp. indica OX=39946 GN=HOX12 PE=2 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 1.038e-23 Identity = 46/92 (50.00%), Postives = 65/92 (70.65%), Query Frame = 1 Query: 109 NKNGVMGSTKKRKLSAEQVNLLEKNFCIQHKLQSERKDQLAFELGMDPRQVAVWFQNRRFRWKTKKLEEEYSNLKNLHETTLLQKCHLQTRV 384 ++G KKR+LS EQ LE +F + KL++ RK QLA ELG+D +QVAVWFQNRR R K+K +EEE++ L++ H+ +LQ CHL+T + Sbjct: 52 GESGGDEQAKKRRLSDEQARFLEMSFKKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHKSKLMEEEFAKLRSAHDAVVLQNCHLETEL 143
BLAST of Phvul.003G251800.3 vs. DB:Swiss
Match: HOX4_ORYSJ (Homeobox-leucine zipper protein HOX4 OS=Oryza sativa subsp. japonica OX=39947 GN=HOX4 PE=1 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 3.756e-22 Identity = 46/92 (50.00%), Postives = 66/92 (71.74%), Query Frame = 1 Query: 127 GSTKKRKLSAEQVNLLEKNFCIQHKLQSERKDQLAFELGMDPRQVAVWFQNRRFRWKTKKLEEEYSNLKNLHETTLLQKCHLQTRVSSSLTE 402 G KKR+LS EQV LE++F +++KL+ ERK +LA +LG+ PRQVAVWFQNRR RWKTK+LE +Y+ L++ +++ L L+ + L E Sbjct: 48 GGEKKRRLSVEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRHSYDSLRLDHDALRRDKDALLAE 139
BLAST of Phvul.003G251800.3 vs. DB:Swiss
Match: HOX4_ORYSI (Homeobox-leucine zipper protein HOX4 OS=Oryza sativa subsp. indica OX=39946 GN=HOX4 PE=1 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 3.756e-22 Identity = 46/92 (50.00%), Postives = 66/92 (71.74%), Query Frame = 1 Query: 127 GSTKKRKLSAEQVNLLEKNFCIQHKLQSERKDQLAFELGMDPRQVAVWFQNRRFRWKTKKLEEEYSNLKNLHETTLLQKCHLQTRVSSSLTE 402 G KKR+LS EQV LE++F +++KL+ ERK +LA +LG+ PRQVAVWFQNRR RWKTK+LE +Y+ L++ +++ L L+ + L E Sbjct: 48 GGEKKRRLSVEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRHSYDSLRLDHDALRRDKDALLAE 139
BLAST of Phvul.003G251800.3 vs. DB:Swiss
Match: HAT5_ARATH (Homeobox-leucine zipper protein HAT5 OS=Arabidopsis thaliana OX=3702 GN=HAT5 PE=1 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 6.289e-22 Identity = 45/73 (61.64%), Postives = 59/73 (80.82%), Query Frame = 1 Query: 136 KKRKLSAEQVNLLEKNFCIQHKLQSERKDQLAFELGMDPRQVAVWFQNRRFRWKTKKLEEEYSNLKNLHETTL 354 KKR+L+ EQV+LLEK+F ++KL+ ERK QLA +LG+ PRQVAVWFQNRR RWKTK+LE +Y LK+ ++ L Sbjct: 68 KKRRLTTEQVHLLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSTYDQLL 140 The following BLAST results are available for this feature:
BLAST of Phvul.003G251800.3 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
Sequences
The
following sequences are available for this feature:
protein sequence of Phvul.003G251800.3_Pv_G19833_v2.1 >Phvul.003G251800.3_Pv_G19833_v2.1 ID=Phvul.003G251800.3_Pv_G19833_v2.1; Name=Phvul.003G251800.3_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=154bpback to top mRNA from alignment at Chr03:49081488..49082547+ Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Phvul.003G251800.3_Pv_G19833_v2.1 ID=Phvul.003G251800.3_Pv_G19833_v2.1; Name=Phvul.003G251800.3; organism=Phaseolus vulgaris; type=mRNA; length=1060bp; location=Sequence derived from: Chr03:49081488..49082547+ (Phaseolus vulgarisback to top Coding sequence (CDS) from alignment at Chr03:49081488..49082547+ >Phvul.003G251800.3_Pv_G19833_v2.1 ID=Phvul.003G251800.3_Pv_G19833_v2.1; Name=Phvul.003G251800.3; organism=Phaseolus vulgaris; type=CDS; length=462bp; location=Sequence derived from: Chr03:49081488..49082547+ (Phaseolus vulgarisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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