Phvul.004G057100.1

Transcript Overview
NamePhvul.004G057100.1
Unique NamePhvul.004G057100.1_Pv_G19833_v2.1
TypemRNA
OrganismPhaseolus vulgaris (Common bean)
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr04supercontigChr04:7887956..7888510 -Phaseolus vulgaris G19833 genome v2.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Phaseolus vulgaris G19833 genome v2.12019-09-17
InterProScan: Phaseolus vulgaris G19833 genome v2.12019-10-18
BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot2019-10-18
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
pspvL049Pisum sativum Cameor genome v1aPisum sativum
pvvuR416Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caipvL0179Cicer arietinum ICC 4958 genome v2Cicer arietinum
capvL141Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
crpvL520Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
crpvL737Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
capvL456Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
capvL665Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccpvL0036Cajanus cajan Asha genome v1.0Cajanus cajan
ccpvL0313Cajanus cajan Asha genome v1.0Cajanus cajan
aspvL295Vigna angularis Jingnong 6 genome v1.1Vigna angularis
pvzwsR405Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvzwsR419Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvvfhR425Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvvfhR468Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvtifR424Vicia faba cv. Tiffany genome v1.0Vicia faba
pvtifR464Vicia faba cv. Tiffany genome v1.0Vicia faba
pvvrvR427Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvuaR369Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvssR478Vicia sativa cv. Studenica genome v1.0Vicia sativa
pvvssR488Vicia sativa cv. Studenica genome v1.0Vicia sativa
canpvL131Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canpvL434Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjpvL028Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjpvL503Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carpvL131Cicer arietinum
carpvL221Cicer arietinum
carpvL445Cicer arietinum
ccapvL684Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapvL825Cajanus cajan cv. Asha genome v2.0Cajanus cajan
pvvumR483Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvvaR467Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvvaR512Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvasR482Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvstR477Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvvstR505Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvpvfR390Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR419Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR426Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvvunR381Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
rna-XM_014650888.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
LR48_mrnaVigan10g211200Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vigun04g084400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Vigun04g084400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Va10G051750.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
PvulFLAVERTChr04.1000334Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Phvul.004G057100Phvul.004G057100_Pv_G19833_v2.1Phaseolus vulgarisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Phvul.004G057100.1Phvul.004G057100.1_Pv_G19833_v2.1-proteinPhaseolus vulgarispolypeptide
Phvul.004G057100.1_Pv_G19833_v2.1Phvul.004G057100.1_Pv_G19833_v2.1Phaseolus vulgarispolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.004G057100.1.v2.1.CDS.2Phvul.004G057100.1.v2.1.CDS.2_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.004G057100.1.v2.1.CDS.1Phvul.004G057100.1.v2.1.CDS.1_Pv_G19833_v2.1Phaseolus vulgarisCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.004G057100.1.v2.1.three_prime_UTR.1Phvul.004G057100.1.v2.1.three_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgaristhree_prime_UTR


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.004G057100.1.v2.1.five_prime_UTR.1Phvul.004G057100.1.v2.1.five_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgarisfive_prime_UTR


Homology
The following BLAST results are available for this feature:
BLAST of Phvul.004G057100.1 vs.
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

protein sequence of Phvul.004G057100.1_Pv_G19833_v2.1

>Phvul.004G057100.1_Pv_G19833_v2.1 ID=Phvul.004G057100.1_Pv_G19833_v2.1; Name=Phvul.004G057100.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=124bp
MATSLKYLICVLFLSFAMKGSSFCNLNNINIGTTRSGRTVGGKPEWNVVV
KNNCNCSQSQIRLSCEGFKTTESVSPSLLSIQGNSCLLISGNALLGFQSI
SFSYAWDPPFLLLPLTSHTSCSS*
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mRNA from alignment at Chr04:7887956..7888510-

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Phvul.004G057100.1_Pv_G19833_v2.1 ID=Phvul.004G057100.1_Pv_G19833_v2.1; Name=Phvul.004G057100.1; organism=Phaseolus vulgaris; type=mRNA; length=555bp; location=Sequence derived from: Chr04:7887956..7888510- (Phaseolus vulgaris
CCAGACACTCTTCTGGTAAGGATTTAGGACTTGTTGTGATTAGAAAATGG
CAACAAGTTTGAAGTACCTAATCTGCGTTCTCTTTCTGAGCTTTGCCATG
AAAGGTAGATTCTATTAAGTTATTGAAGCTTTGCCATGAAGCTTTAAGTT
TGTGAGTGTGATTGTGTGTGTTGTGCATGAGTTTGATCCATTAATTTTGC
AGGGTCTAGTTTCTGTAACTTGAACAACATCAACATTGGAACAACCAGAA
GTGGAAGAACAGTAGGTGGAAAACCTGAGTGGAACGTGGTTGTGAAGAAC
AACTGCAATTGCTCACAGAGTCAAATAAGGTTGTCATGCGAAGGGTTCAA
GACTACTGAGAGTGTTAGCCCATCACTTCTCTCCATTCAAGGGAATTCTT
GCCTCCTTATCAGTGGCAATGCTTTGTTGGGTTTTCAAAGCATTAGCTTC
TCTTATGCTTGGGATCCTCCTTTTCTCCTCCTGCCTCTCACCTCTCATAC
TTCTTGTTCATCATAAACCTTTCTGCAAACACTCCATGCCTCCATTCATA
ATAAT
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Coding sequence (CDS) from alignment at Chr04:7887956..7888510-

>Phvul.004G057100.1_Pv_G19833_v2.1 ID=Phvul.004G057100.1_Pv_G19833_v2.1; Name=Phvul.004G057100.1; organism=Phaseolus vulgaris; type=CDS; length=372bp; location=Sequence derived from: Chr04:7887956..7888510- (Phaseolus vulgaris
ATGGCAACAAGTTTGAAGTACCTAATCTGCGTTCTCTTTCTGAGCTTTGC
CATGAAAGGGTCTAGTTTCTGTAACTTGAACAACATCAACATTGGAACAA
CCAGAAGTGGAAGAACAGTAGGTGGAAAACCTGAGTGGAACGTGGTTGTG
AAGAACAACTGCAATTGCTCACAGAGTCAAATAAGGTTGTCATGCGAAGG
GTTCAAGACTACTGAGAGTGTTAGCCCATCACTTCTCTCCATTCAAGGGA
ATTCTTGCCTCCTTATCAGTGGCAATGCTTTGTTGGGTTTTCAAAGCATT
AGCTTCTCTTATGCTTGGGATCCTCCTTTTCTCCTCCTGCCTCTCACCTC
TCATACTTCTTGTTCATCATAA
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