Phvul.004G057800.1

Transcript Overview
NamePhvul.004G057800.1
Unique NamePhvul.004G057800.1_Pv_G19833_v2.1
TypemRNA
OrganismPhaseolus vulgaris (Common bean)
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr04supercontigChr04:8031897..8033253 +Phaseolus vulgaris G19833 genome v2.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Phaseolus vulgaris G19833 genome v2.12019-09-17
InterProScan: Phaseolus vulgaris G19833 genome v2.12019-10-18
BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot2019-10-18
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
pvvuR416Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caipvL0176Cicer arietinum ICC 4958 genome v2Cicer arietinum
caipvL0179Cicer arietinum ICC 4958 genome v2Cicer arietinum
capvL141Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
crpvL520Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
crpvL737Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
capvL456Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
capvL665Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccpvL0036Cajanus cajan Asha genome v1.0Cajanus cajan
ccpvL0313Cajanus cajan Asha genome v1.0Cajanus cajan
ccpvL0974Cajanus cajan Asha genome v1.0Cajanus cajan
anpvL0143Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0776Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL1023Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL1164Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL1298Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
aspvL295Vigna angularis Jingnong 6 genome v1.1Vigna angularis
pvzwsR405Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvzwsR419Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvvfhR425Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvvfhR468Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvtifR424Vicia faba cv. Tiffany genome v1.0Vicia faba
pvtifR464Vicia faba cv. Tiffany genome v1.0Vicia faba
pvvrvR427Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvuaR369Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvssR478Vicia sativa cv. Studenica genome v1.0Vicia sativa
canpvL131Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canpvL434Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjpvL028Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjpvL503Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carpvL131Cicer arietinum
carpvL221Cicer arietinum
carpvL445Cicer arietinum
ccapvL684Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapvL825Cajanus cajan cv. Asha genome v2.0Cajanus cajan
pvvumR483Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvvaR467Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvvaR512Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvasR482Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvstR477Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvpvfR390Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR419Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR423Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR426Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvvunR381Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
rna-KK1_034566Cajanus cajan Asha genome v1.0Cajanus cajan
Vfaba.Hedin2.R1.5g027440.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Va10G051480.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
rna-TanjilR_05204Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
LR48_mrnaVigan10g210300Vigna angularis Jingnong 6 genome v1.1Vigna angularis
rna-TanjilR_06031Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vigun04g086500.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-XM_022784463.1Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vigan.11G084100.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Vum_11G00540.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Vigst.11G043400.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Psat03G0512300-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
evm.model.Chr04.763Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Cc_v2.0_20795.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Vigun04g086500.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
XM_058880743.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Vfaba.Tiffany.R1.5g023360.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Cc_v2.0_15776.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
PvulFLAVERTChr04.332Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
PvulFLAVERTChr08.1000939Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Phvul.004G057800Phvul.004G057800_Pv_G19833_v2.1Phaseolus vulgarisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Phvul.004G057800.1_Pv_G19833_v2.1Phvul.004G057800.1_Pv_G19833_v2.1Phaseolus vulgarispolypeptide
Phvul.004G057800.1Phvul.004G057800.1_Pv_G19833_v2.1-proteinPhaseolus vulgarispolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.004G057800.1.v2.1.five_prime_UTR.1Phvul.004G057800.1.v2.1.five_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgarisfive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.004G057800.1.v2.1.CDS.1Phvul.004G057800.1.v2.1.CDS.1_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.004G057800.1.v2.1.CDS.2Phvul.004G057800.1.v2.1.CDS.2_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.004G057800.1.v2.1.CDS.3Phvul.004G057800.1.v2.1.CDS.3_Pv_G19833_v2.1Phaseolus vulgarisCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.004G057800.1.v2.1.three_prime_UTR.1Phvul.004G057800.1.v2.1.three_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgaristhree_prime_UTR


Homology
BLAST of Phvul.004G057800.1 vs. DB:Swiss
Match: MYB20_ARATH (Transcription factor MYB20 OS=Arabidopsis thaliana OX=3702 GN=MYB20 PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 5.947e-70
Identity = 101/141 (71.63%), Postives = 114/141 (80.85%), Query Frame = 1
Query:    1 MGRQPCCDKVGLKRGPWTIEEDHKLMNFILNNGIQCWRAVPKLAGLLRCGKSCRLRWINYLRPDLKRGGFTEVEEDQIIQLHSCFGNRWSKIASHFPGRTDNEIKNHWNTKIKKRLKLLGLDPFTLMPIEQKEKSGADKVK 423
            MGRQPCCDKVGLK+GPWT EED KL+NFIL NG  CWRAVPKL+GLLRCGKSCRLRW NYLRPDLKRG  ++ EE  +I LHS  GNRWSKIASH PGRTDNEIKNHWNT IKK+L+ +G+DP T  P+   EK   + +K
Sbjct:    1 MGRQPCCDKVGLKKGPWTAEEDRKLINFILTNGQCCWRAVPKLSGLLRCGKSCRLRWTNYLRPDLKRGLLSDYEEKMVIDLHSQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLRKMGIDPLTHKPLSIVEKEDEEPLK 141          
BLAST of Phvul.004G057800.1 vs. DB:Swiss
Match: MYB15_ANTMA (Myb-related protein 315 OS=Antirrhinum majus OX=4151 GN=MYB315 PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 7.321e-69
Identity = 125/267 (46.82%), Postives = 164/267 (61.42%), Query Frame = 1
Query:    1 MGRQPCCDKVGLKRGPWTIEEDHKLMNFILNNGIQCWRAVPKLAGLLRCGKSCRLRWINYLRPDLKRGGFTEVEEDQIIQLHSCFGNRWSKIASHFPGRTDNEIKNHWNTKIKKRLKLLGLDPFTLMPIEQKEKSGADKVKTDMQPKSTSNGSDQGVENNKSLDMHATVXXXXXXXXXXXSRVKWDDTTGFFNNYEVLCSQLDLGSWMSQETKAXXXXXXXXXXXXXXXXXXXVDESSY---LQENSLQQWVEGLDSILSWDNFSPL 792
            M RQPC +K GLKRGPWT EED KL +++L NGIQ WR +PKLAGL RCGKSCRLRW+NYLRPDLK+G  TE+EE+QII+LH+  GNRWSKIA H PGRTDNEIKN+WNT IKK+LKLLG+DP    P E K      K+++D +    SN  D      + ++  +         +     +K +  T   ++Y  L    DL S      ++S     S S     S+  S  ++S+   + E S++QWV+ +DS L WD F+ L
Sbjct:    1 MERQPCREKFGLKRGPWTEEEDQKLTSYVLKNGIQGWRVIPKLAGLSRCGKSCRLRWMNYLRPDLKKGPLTEMEENQIIELHAHLGNRWSKIALHIPGRTDNEIKNYWNTHIKKKLKLLGIDPNNHQPFEHKGNVDETKIESDTK---ESNSQDM----KQIVNEVSRQGNNDQITESTSPEIKDEIVTSCQSDY--LMHNNDLMS-----NRSSNYYSPSFSMEESLSNPKSTGQTSFAVSIHEESMKQWVQSVDSKLPWDCFNQL 253          
BLAST of Phvul.004G057800.1 vs. DB:Swiss
Match: MYB2_PHYPA (Myb-related protein Pp2 OS=Physcomitrella patens subsp. patens OX=3218 GN=PP2 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.352e-66
Identity = 93/130 (71.54%), Postives = 112/130 (86.15%), Query Frame = 1
Query:    1 MGRQPCCDKVGLKRGPWTIEEDHKLMNFILNNGIQCWRAVPKLAGLLRCGKSCRLRWINYLRPDLKRGGFTEVEEDQIIQLHSCFGNRWSKIASHFPGRTDNEIKNHWNTKIKKRLKLLGLDPFTLMPIE 390
            MGR+PCC+KVGL+RGPWT EED KL++ I NNG+ CWRA+PKLAGLLRCGKSCRLRW NYLRPDLKRG F+E EE+ I+ LH+  GNRWS+IA+  PGRTDNEIKN+WNT++KKRL+  GLDP T +P+E
Sbjct:    1 MGRKPCCEKVGLRRGPWTSEEDQKLVSHITNNGLSCWRAIPKLAGLLRCGKSCRLRWTNYLRPDLKRGIFSEAEENLILDLHATLGNRWSRIAAQLPGRTDNEIKNYWNTRLKKRLRSQGLDPNTHLPLE 130          
BLAST of Phvul.004G057800.1 vs. DB:Swiss
Match: ODO1_PETHY (Protein ODORANT1 OS=Petunia hybrida OX=4102 GN=ODO1 PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 2.373e-65
Identity = 102/159 (64.15%), Postives = 120/159 (75.47%), Query Frame = 1
Query:    1 MGRQPCCDKVGLKRGPWTIEEDHKLMNFILNNGIQCWRAVPKLAGLLRCGKSCRLRWINYLRPDLKRGGFTEVEEDQIIQLHSCFGNRWSKIASHFPGRTDNEIKNHWNTKIKKRLKLLGLDPFTLMPIEQKEKSGADKVKTDMQPKSTSNGSDQGVEN 477
            MGRQPCCDK+G+K+GPWT EED KL++FIL NG  CWRAVPKLAGL RCGKSCRLRW NYLRPDLKRG  ++ EE  +I LHS  GNRWSKIA+  PGRTDNEIKNHWNT IKK+L  +G+DP T  P+ +KE + +D+  T+         SDQ  EN
Sbjct:    1 MGRQPCCDKLGVKKGPWTAEEDKKLISFILTNGQCCWRAVPKLAGLKRCGKSCRLRWTNYLRPDLKRGLLSDAEEKLVIDLHSRLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTHEPL-KKEANLSDQPTTE---------SDQNKEN 149          
BLAST of Phvul.004G057800.1 vs. DB:Swiss
Match: MYB17_ARATH (Transcription factor MYB41 OS=Arabidopsis thaliana OX=3702 GN=MYB17 PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 6.736e-59
Identity = 87/129 (67.44%), Postives = 99/129 (76.74%), Query Frame = 1
Query:    1 MGRQPCCDKVGLKRGPWTIEEDHKLMNFILNNGIQCWRAVPKLAGLLRCGKSCRLRWINYLRPDLKRGGFTEVEEDQIIQLHSCFGNRWSKIASHFPGRTDNEIKNHWNTKIKKRLKLLGLDPFTLMPI 387
            MGR PCCDK+GLK+GPWT EED  L+  I  NG   WR +PKLAGLLRCGKSCRLRW NYLRPD+KRG FT  EE  +IQLH+  GNRW+ IA+  PGRTDNEIKN WNT +KKRL  +GLDP T  P+
Sbjct:    1 MGRTPCCDKIGLKKGPWTPEEDEVLVAHIKKNGHGSWRTLPKLAGLLRCGKSCRLRWTNYLRPDIKRGPFTADEEKLVIQLHAILGNRWAAIAAQLPGRTDNEIKNLWNTHLKKRLLSMGLDPRTHEPL 129          
BLAST of Phvul.004G057800.1 vs. DB:Swiss
Match: MYB41_ARATH (Transcription factor MYB41 OS=Arabidopsis thaliana OX=3702 GN=MYB41 PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 7.386e-58
Identity = 85/128 (66.41%), Postives = 99/128 (77.34%), Query Frame = 1
Query:    1 MGRQPCCDKVGLKRGPWTIEEDHKLMNFILNNGIQCWRAVPKLAGLLRCGKSCRLRWINYLRPDLKRGGFTEVEEDQIIQLHSCFGNRWSKIASHFPGRTDNEIKNHWNTKIKKRLKLLGLDPFTLMP 384
            MGR PCCDK G+K+GPWT EED KL+++I  +G   WR +PK AGL RCGKSCRLRW NYLRPD+KRG F+  EE+ IIQLHS  GN+WS IA+  PGRTDNEIKNHWNT I+KRL   G+DP T  P
Sbjct:    1 MGRSPCCDKNGVKKGPWTAEEDQKLIDYIRFHGPGNWRTLPKNAGLHRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSVMGNKWSAIAARLPGRTDNEIKNHWNTHIRKRLVRSGIDPVTHSP 128          
BLAST of Phvul.004G057800.1 vs. DB:Swiss
Match: MYB16_ARATH (Transcription factor MYB16 OS=Arabidopsis thaliana OX=3702 GN=MYB16 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.146e-57
Identity = 84/128 (65.62%), Postives = 99/128 (77.34%), Query Frame = 1
Query:    1 MGRQPCCDKVGLKRGPWTIEEDHKLMNFILNNGIQCWRAVPKLAGLLRCGKSCRLRWINYLRPDLKRGGFTEVEEDQIIQLHSCFGNRWSKIASHFPGRTDNEIKNHWNTKIKKRLKLLGLDPFTLMP 384
            MGR PCCDK+GLK+GPWT EED KL+ +I  +G   WR++P+ AGL RCGKSCRLRW NYLRPD+KRG F   EE  IIQLH+  GNRWS IA+H P RTDNEIKN+WNT +KKRL  +G+DP T  P
Sbjct:    1 MGRSPCCDKLGLKKGPWTPEEDQKLLAYIEEHGHGSWRSLPEKAGLHRCGKSCRLRWTNYLRPDIKRGKFNLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLVKMGIDPVTHKP 128          
BLAST of Phvul.004G057800.1 vs. DB:Swiss
Match: MY106_ARATH (Transcription factor MYB106 OS=Arabidopsis thaliana OX=3702 GN=MYB106 PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 1.445e-57
Identity = 84/125 (67.20%), Postives = 98/125 (78.40%), Query Frame = 1
Query:    1 MGRQPCCDKVGLKRGPWTIEEDHKLMNFILNNGIQCWRAVPKLAGLLRCGKSCRLRWINYLRPDLKRGGFTEVEEDQIIQLHSCFGNRWSKIASHFPGRTDNEIKNHWNTKIKKRLKLLGLDPFT 375
            MGR PCCDK GLK+GPWT EED KL+ +I  +G   WR++P+ AGL RCGKSCRLRW NYLRPD+KRG FT  EE  IIQLH+  GNRWS IA+H P RTDNEIKN+WNT +KKRL  +G+DP T
Sbjct:    1 MGRSPCCDKAGLKKGPWTPEEDQKLLAYIEEHGHGSWRSLPEKAGLQRCGKSCRLRWTNYLRPDIKRGKFTVQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLIKMGIDPVT 125          
BLAST of Phvul.004G057800.1 vs. DB:Swiss
Match: MYB15_ARATH (Transcription factor MYB15 OS=Arabidopsis thaliana OX=3702 GN=MYB15 PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.573e-57
Identity = 83/117 (70.94%), Postives = 97/117 (82.91%), Query Frame = 1
Query:    1 MGRQPCCDKVGLKRGPWTIEEDHKLMNFILNNGIQCWRAVPKLAGLLRCGKSCRLRWINYLRPDLKRGGFTEVEEDQIIQLHSCFGNRWSKIASHFPGRTDNEIKNHWNTKIKKRLK 351
            MGR PCC+K+GLKRGPWT EED  L++FILN+G   WRA+PK AGLLRCGKSCRLRW+NYL+PD+KRG FT+ EED II LH   GNRWS IA+  PGRTDNEIKN W+T +KKRL+
Sbjct:    1 MGRAPCCEKMGLKRGPWTPEEDQILVSFILNHGHSNWRALPKQAGLLRCGKSCRLRWMNYLKPDIKRGNFTKEEEDAIISLHQILGNRWSAIAAKLPGRTDNEIKNVWHTHLKKRLE 117          
BLAST of Phvul.004G057800.1 vs. DB:Swiss
Match: MYB4_ARATH (Transcription repressor MYB4 OS=Arabidopsis thaliana OX=3702 GN=MYB4 PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 7.257e-56
Identity = 85/150 (56.67%), Postives = 110/150 (73.33%), Query Frame = 1
Query:    1 MGRQPCCDKVGLKRGPWTIEEDHKLMNFILNNGIQCWRAVPKLAGLLRCGKSCRLRWINYLRPDLKRGGFTEVEEDQIIQLHSCFGNRWSKIASHFPGRTDNEIKNHWNTKIKKRLKLLGLDPFTLMPIEQKEKSGADKVKTDMQPKSTS 450
            MGR PCC+K    +G WT EED +L+ +I  +G  CWR++PK AGLLRCGKSCRLRWINYLRPDLKRG FTE E++ II+LHS  GN+WS IA   PGRTDNEIKN+WNT I+++L   G+DP +  PI Q+  +  D   T ++P +++
Sbjct:    1 MGRSPCCEKAHTNKGAWTKEEDERLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLINRGIDPTSHRPI-QESSASQDSKPTQLEPVTSN 149          
The following BLAST results are available for this feature:
BLAST of Phvul.004G057800.1 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
MYB20_ARATH5.947e-7071.63Transcription factor MYB20 OS=Arabidopsis thaliana... [more]
MYB15_ANTMA7.321e-6946.82Myb-related protein 315 OS=Antirrhinum majus OX=41... [more]
MYB2_PHYPA1.352e-6671.54Myb-related protein Pp2 OS=Physcomitrella patens s... [more]
ODO1_PETHY2.373e-6564.15Protein ODORANT1 OS=Petunia hybrida OX=4102 GN=ODO... [more]
MYB17_ARATH6.736e-5967.44Transcription factor MYB41 OS=Arabidopsis thaliana... [more]
MYB41_ARATH7.386e-5866.41Transcription factor MYB41 OS=Arabidopsis thaliana... [more]
MYB16_ARATH1.146e-5765.63Transcription factor MYB16 OS=Arabidopsis thaliana... [more]
MY106_ARATH1.445e-5767.20Transcription factor MYB106 OS=Arabidopsis thalian... [more]
MYB15_ARATH3.573e-5770.94Transcription factor MYB15 OS=Arabidopsis thaliana... [more]
MYB4_ARATH7.257e-5656.67Transcription repressor MYB4 OS=Arabidopsis thalia... [more]
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InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainSMARTSM00717santcoord: 13..63
e-value: 3.0E-6
score: 36.8
coord: 66..114
e-value: 5.1E-15
score: 65.9
IPR001005SANT/Myb domainPFAMPF00249Myb_DNA-bindingcoord: 67..110
e-value: 1.4E-13
score: 50.8
coord: 14..61
e-value: 6.5E-12
score: 45.4
IPR001005SANT/Myb domainCDDcd00167SANTcoord: 70..110
e-value: 1.58535E-10
score: 53.3482
IPR001005SANT/Myb domainCDDcd00167SANTcoord: 16..61
e-value: 1.4467E-4
score: 36.7846
NoneNo IPR availableGENE3D1.10.10.60coord: 69..145
e-value: 6.6E-19
score: 69.7
NoneNo IPR availableGENE3D1.10.10.60coord: 11..67
e-value: 3.1E-16
score: 61.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 132..182
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 164..182
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 142..162
IPR017930Myb domainPROSITEPS51294HTH_MYBcoord: 9..61
score: 14.207
IPR017930Myb domainPROSITEPS51294HTH_MYBcoord: 62..116
score: 23.549
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 11..108

Sequences
The following sequences are available for this feature:

protein sequence of Phvul.004G057800.1_Pv_G19833_v2.1

>Phvul.004G057800.1_Pv_G19833_v2.1 ID=Phvul.004G057800.1_Pv_G19833_v2.1; Name=Phvul.004G057800.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=276bp
MGRQPCCDKVGLKRGPWTIEEDHKLMNFILNNGIQCWRAVPKLAGLLRCG
KSCRLRWINYLRPDLKRGGFTEVEEDQIIQLHSCFGNRWSKIASHFPGRT
DNEIKNHWNTKIKKRLKLLGLDPFTLMPIEQKEKSGADKVKTDMQPKSTS
NGSDQGVENNKSLDMHATVEEPKTEEKMEESRVKWDDTTGFFNNYEVLCS
QLDLGSWMSQETKASTSSYCSSSFSLDDSSNFSVDESSYLQENSLQQWVE
GLDSILSWDNFSPLQKDFPFLENRQ*
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mRNA from alignment at Chr04:8031897..8033253+

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Phvul.004G057800.1_Pv_G19833_v2.1 ID=Phvul.004G057800.1_Pv_G19833_v2.1; Name=Phvul.004G057800.1; organism=Phaseolus vulgaris; type=mRNA; length=1357bp; location=Sequence derived from: Chr04:8031897..8033253+ (Phaseolus vulgaris
CTTGATTTGGCAAAAGGGTAGGTTCCATAATGGGAAGACAACCTTGTTGT GATAAGGTTGGTTTGAAGAGAGGCCCTTGGACTATTGAGGAAGATCACAA GCTTATGAATTTCATTCTCAACAATGGTATTCAATGCTGGAGAGCAGTTC CCAAGCTAGCAGGTATTTATTTTGTGAAGAAATTGTTCACATGTGACTTT CTCTTAAAGTTGTGTATTATTTGAATTGTGCATTGTTTGGCATGGTTCTG AAGGATTGTTGAGATGTGGAAAGAGCTGCAGATTGAGATGGATTAATTAT CTCAGACCAGACCTCAAGAGGGGTGGATTTACTGAAGTGGAAGAGGATCA AATTATACAACTACATTCATGTTTTGGTAACAGGTATATATGTATGTTAC ATTTTTCTGTATTTTCTTTGCAGCAAAAATATATGGCATGGCTTTTGGAC AGTGTATTGTGAAGAAGCCTTTTAAATTGCAAATGTAATTGCAATTTTAT TGTGATCCTTGGTATTATAGAAAGTTACTGATAAATATGACCACAATTAC AATCACAATAAGCAAGTTGGAAAACCTTAACTATGCCACCAAAATTACAA TCTCTTAAAACCTTTTTTGAAATAATCCTAGGGGGGTGCTGTGGTCTAAA AGGATACCAATGGATACTATAATTTCTTCTAACACAATGAAGCTCATTTT TCAGGTGGTCTAAGATTGCTTCACATTTTCCAGGGAGGACAGACAATGAA ATCAAGAATCATTGGAACACAAAAATCAAAAAGAGGTTGAAGCTCCTTGG TTTGGACCCTTTCACCCTGATGCCTATTGAGCAAAAGGAAAAGTCTGGTG CTGACAAAGTTAAGACAGACATGCAGCCAAAAAGCACTTCAAATGGATCT GACCAAGGTGTGGAGAACAACAAGTCCTTGGACATGCATGCCACAGTAGA AGAGCCAAAAACAGAAGAGAAAATGGAAGAAAGCAGGGTCAAATGGGATG ATACCACTGGATTTTTTAACAATTATGAAGTGCTGTGCTCACAGTTGGAT TTGGGATCATGGATGAGCCAAGAAACAAAAGCCAGCACTAGTTCTTATTG TAGTTCTTCTTTCTCACTGGATGATTCCAGCAACTTTTCTGTAGATGAAT CCTCTTATCTTCAGGAGAATTCCTTGCAACAATGGGTTGAGGGTTTGGAT TCCATTCTCTCATGGGATAACTTCAGTCCACTTCAGAAAGATTTTCCCTT CTTGGAAAATAGGCAATAAGCTCCATTTTTACAATCTCTGCAGCAATAAA ATGCTACAAAATTTCTTGTCATGAAGAACTCCACTTTCATTCCTTCAATC CCCCAAC
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Coding sequence (CDS) from alignment at Chr04:8031897..8033253+

>Phvul.004G057800.1_Pv_G19833_v2.1 ID=Phvul.004G057800.1_Pv_G19833_v2.1; Name=Phvul.004G057800.1; organism=Phaseolus vulgaris; type=CDS; length=828bp; location=Sequence derived from: Chr04:8031897..8033253+ (Phaseolus vulgaris
ATGGGAAGACAACCTTGTTGTGATAAGGTTGGTTTGAAGAGAGGCCCTTG
GACTATTGAGGAAGATCACAAGCTTATGAATTTCATTCTCAACAATGGTA
TTCAATGCTGGAGAGCAGTTCCCAAGCTAGCAGGATTGTTGAGATGTGGA
AAGAGCTGCAGATTGAGATGGATTAATTATCTCAGACCAGACCTCAAGAG
GGGTGGATTTACTGAAGTGGAAGAGGATCAAATTATACAACTACATTCAT
GTTTTGGTAACAGGTGGTCTAAGATTGCTTCACATTTTCCAGGGAGGACA
GACAATGAAATCAAGAATCATTGGAACACAAAAATCAAAAAGAGGTTGAA
GCTCCTTGGTTTGGACCCTTTCACCCTGATGCCTATTGAGCAAAAGGAAA
AGTCTGGTGCTGACAAAGTTAAGACAGACATGCAGCCAAAAAGCACTTCA
AATGGATCTGACCAAGGTGTGGAGAACAACAAGTCCTTGGACATGCATGC
CACAGTAGAAGAGCCAAAAACAGAAGAGAAAATGGAAGAAAGCAGGGTCA
AATGGGATGATACCACTGGATTTTTTAACAATTATGAAGTGCTGTGCTCA
CAGTTGGATTTGGGATCATGGATGAGCCAAGAAACAAAAGCCAGCACTAG
TTCTTATTGTAGTTCTTCTTTCTCACTGGATGATTCCAGCAACTTTTCTG
TAGATGAATCCTCTTATCTTCAGGAGAATTCCTTGCAACAATGGGTTGAG
GGTTTGGATTCCATTCTCTCATGGGATAACTTCAGTCCACTTCAGAAAGA
TTTTCCCTTCTTGGAAAATAGGCAATAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR001005SANT/Myb
IPR017930Myb_dom
IPR009057Homeodomain-like_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding