Phvul.004G058300.4

Transcript Overview
NamePhvul.004G058300.4
Unique NamePhvul.004G058300.4_Pv_G19833_v2.1
TypemRNA
OrganismPhaseolus vulgaris (Common bean)
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr04supercontigChr04:8083845..8087602 -Phaseolus vulgaris G19833 genome v2.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Phaseolus vulgaris G19833 genome v2.12019-09-17
InterProScan: Phaseolus vulgaris G19833 genome v2.12019-10-18
BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot2019-10-18
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
pspvL049Pisum sativum Cameor genome v1aPisum sativum
pvvuR416Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
capvL141Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
capvL456Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
capvL665Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccpvL0036Cajanus cajan Asha genome v1.0Cajanus cajan
ccpvL0313Cajanus cajan Asha genome v1.0Cajanus cajan
ccpvL0974Cajanus cajan Asha genome v1.0Cajanus cajan
aspvL295Vigna angularis Jingnong 6 genome v1.1Vigna angularis
pvzwsR405Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvzwsR419Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvvfhR425Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvvfhR468Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvtifR424Vicia faba cv. Tiffany genome v1.0Vicia faba
pvtifR464Vicia faba cv. Tiffany genome v1.0Vicia faba
pvvrvR427Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvuaR369Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvssR478Vicia sativa cv. Studenica genome v1.0Vicia sativa
canpvL131Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canpvL434Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjpvL028Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjpvL503Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carpvL131Cicer arietinum
carpvL221Cicer arietinum
carpvL445Cicer arietinum
ccapvL684Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapvL825Cajanus cajan cv. Asha genome v2.0Cajanus cajan
pvvumR483Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvvaR467Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvvaR512Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvasR482Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvstR477Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvpvfR390Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR419Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR423Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR426Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvvunR381Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
rna-XM_004489506.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
evm.model.Chr04.767Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Cc_v2.0_20790.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
jg45943.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vfaba.Tiffany.R1.1g091040.1Vicia faba cv. Tiffany genome v1.0Vicia faba
rna-KK1_034559Cajanus cajan Asha genome v1.0Cajanus cajan
Vfaba.Hedin2.R1.5g027240.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Vfaba.Hedin2.R1.1g121360.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Va10G051310.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vigst.11G043800.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Vigan.11G085000.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Vigun04g087000.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Ca_14685Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Vfaba.Tiffany.R1.5g023160.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Psat1g083240.1Pisum sativum Cameor genome v1aPisum sativum
XM_058922940.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Psat01G0213700-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
XM_058885168.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Psat03G0513900-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
PvulFLAVERTChr08.955Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
PvulFLAVERTChr04.1000340Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Phvul.004G058300Phvul.004G058300_Pv_G19833_v2.1Phaseolus vulgarisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Phvul.004G058300.4Phvul.004G058300.4_Pv_G19833_v2.1-proteinPhaseolus vulgarispolypeptide
Phvul.004G058300.4_Pv_G19833_v2.1Phvul.004G058300.4_Pv_G19833_v2.1Phaseolus vulgarispolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.004G058300.4.v2.1.CDS.8Phvul.004G058300.4.v2.1.CDS.8_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.004G058300.4.v2.1.CDS.7Phvul.004G058300.4.v2.1.CDS.7_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.004G058300.4.v2.1.CDS.6Phvul.004G058300.4.v2.1.CDS.6_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.004G058300.4.v2.1.CDS.5Phvul.004G058300.4.v2.1.CDS.5_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.004G058300.4.v2.1.CDS.4Phvul.004G058300.4.v2.1.CDS.4_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.004G058300.4.v2.1.CDS.3Phvul.004G058300.4.v2.1.CDS.3_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.004G058300.4.v2.1.CDS.2Phvul.004G058300.4.v2.1.CDS.2_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.004G058300.4.v2.1.CDS.1Phvul.004G058300.4.v2.1.CDS.1_Pv_G19833_v2.1Phaseolus vulgarisCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.004G058300.4.v2.1.three_prime_UTR.1Phvul.004G058300.4.v2.1.three_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgaristhree_prime_UTR


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.004G058300.4.v2.1.five_prime_UTR.1Phvul.004G058300.4.v2.1.five_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgarisfive_prime_UTR


Homology
BLAST of Phvul.004G058300.4 vs. DB:Swiss
Match: CTNS_ARATH (Cystinosin homolog OS=Arabidopsis thaliana OX=3702 GN=At5g40670 PE=2 SV=1)

HSP 1 Score: 345.895 bits (886), Expect = 2.718e-119
Identity = 161/266 (60.53%), Postives = 208/266 (78.20%), Query Frame = 1
Query:    1 MVPWKSFPLEVTYQVFGWLAFLSWAVAGYPQIILNFRRKSVVGLSLDFALLNLTKQCSYLIYNASLYFSPVVQKQYFERYGYGQMIPVAANDVAFSSHAVILPLIIFSQIAMFDRGNQKFSYYSIAIAVVVWFTAAVCFFIALPSQSWLWLVSIFNIIQAILTVIKYFPQTFLNFSRKSTNGFSIGNVLLDFSGGVFNYSQMVLQSIDQDSWVNFYGNIGKVLISLETIFYDSILICQHYVLYPDNKKGLPSKSSEEIRQPLICAS 798
            M  W S PLE++Y++ GW+AF SW+++ YPQ+ILNFRR+SVVGL+ DF +LNLTK  SY+IYN  LYFSPV+QKQYF+ YG  +MIPVAANDVAFS HAV++  +   QI +++RG QK S  +I I VVVW  AA+CFFIALP+ SWLWL+SIFN IQ  +T +KY PQ  +NF+RKST G+SIGN+LLDF+GG+ NY QMV+QSIDQ+SW NFYGN+GK L+SL +IF+D + + QHYVLYP+ K     ++ EE  +PLI +S
Sbjct:    1 MASWNSIPLEISYEIVGWIAFASWSISFYPQLILNFRRRSVVGLNFDFVMLNLTKHSSYMIYNVCLYFSPVIQKQYFDTYGDKEMIPVAANDVAFSIHAVVMTAVTLFQIFIYERGPQKVSRLAIGIVVVVWGFAAICFFIALPTHSWLWLISIFNSIQVFMTCVKYIPQAKMNFTRKSTVGWSIGNILLDFTGGLANYLQMVIQSIDQNSWKNFYGNMGKTLLSLISIFFDILFMFQHYVLYPEKKVSKSPETGEESNEPLIDSS 266          
BLAST of Phvul.004G058300.4 vs. DB:Swiss
Match: CTNS_DICDI (Cystinosin homolog OS=Dictyostelium discoideum OX=44689 GN=ctns PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 5.641e-60
Identity = 99/232 (42.67%), Postives = 151/232 (65.09%), Query Frame = 1
Query:   49 GWLAFLSWAVAGYPQIILNFRRKSVVGLSLDFALLNLTKQCSYLIYNASLYFSPVVQKQYFERYGYGQMIPVAANDVAFSSHAVILPLIIFSQIAMFDRGNQKFSYYSIAIAVVVWFTAAVCFFIALPSQ-SWLWLVSIFNIIQAILTVIKYFPQTFLNFSRKSTNGFSIGNVLLDFSGGVFNYSQMVLQSIDQDSWVNFYGNIGKVLISLETIFYDSILICQHYVLYPDNK 741
            GW+ F  W+++ YPQ+ILNFR+K+V+GLS DF L N+T    Y ++N+ LYF  +V+ +Y+++YG    IPV  +D+AF+ H  +L  I   Q  ++DRGNQK S   I IA ++W +  V   +   +  +WLW+++ ++ ++  +T IKY PQ +LNF  KST+G+S+ NVLLDFSGGV +  QM L   D  +W  F G+  K+ +SL +I +D + I QHY+LY + K
Sbjct:   12 GWIYFACWSLSFYPQVILNFRKKNVIGLSFDFLLFNITGYACYSVFNSVLYFDKLVKNEYYDKYG--PPIPVQQSDIAFAIHGFVLTAITIIQCFIYDRGNQKNSKLGIGIATLIWVSLIVMTILGFSNVFTWLWVINYYSYVKLFITFIKYIPQAYLNFKNKSTSGWSVHNVLLDFSGGVLSLLQMFLDVADSGNWNIFTGDPVKLGLSLFSIAFDILFIIQHYILYRNPK 241          
BLAST of Phvul.004G058300.4 vs. DB:Swiss
Match: CTNS_HUMAN (Cystinosin OS=Homo sapiens OX=9606 GN=CTNS PE=1 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 3.500e-59
Identity = 101/240 (42.08%), Postives = 156/240 (65.00%), Query Frame = 1
Query:   13 KSFPLEVTYQVFGWLAFLSWAVAGYPQIILNFRRKSVVGLSLDFALLNLTKQCSYLIYNASLYFSPVVQKQYFERYGYGQMIPVAANDVAFSSHAVILPLIIFSQIAMFDRGNQKFSYYSIAIAVVVWFTAAVCFFIA-LPSQSWLWLVSIFNIIQAILTVIKYFPQTFLNFSRKSTNGFSIGNVLLDFSGGVFNYSQMVLQSIDQDSWVNFYGNIGKVLISLETIFYDSILICQHYVLY 729
            +S  + +  QV GW+ F++W+++ YPQ+I+N+RRKSV+GLS DF  LNLT   +Y ++N  L + P +++Q+  +Y  G + PV +NDV FS HAV+L LII  Q  +++RG Q+ S+ +I   V+ W  A V   +A +   +WL  +  F+ I+  +T++KYFPQ ++NF  KST G+SIGNVLLDF+GG F+  QM LQS + D W   +G+  K  + + +I +D +   QH+ LY
Sbjct:  119 RSSAISIINQVIGWIYFVAWSISFYPQVIMNWRRKSVIGLSFDFVALNLTGFVAYSVFNIGLLWVPYIKEQFLLKYPNG-VNPVNSNDVFFSLHAVVLTLIIIVQCCLYERGGQRVSWPAIGFLVLAWLFAFVTMIVAAVGVTTWLQFLFCFSYIKLAVTLVKYFPQAYMNFYYKSTEGWSIGNVLLDFTGGSFSLLQMFLQSYNNDQWTLIFGDPTKFGLGVFSIVFDVVFFIQHFCLY 357          
BLAST of Phvul.004G058300.4 vs. DB:Swiss
Match: CTNS_MOUSE (Cystinosin OS=Mus musculus OX=10090 GN=Ctns PE=1 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 3.654e-59
Identity = 103/231 (44.59%), Postives = 150/231 (64.94%), Query Frame = 1
Query:   40 QVFGWLAFLSWAVAGYPQIILNFRRKSVVGLSLDFALLNLTKQCSYLIYNASLYFSPVVQKQYFERYGYGQMIPVAANDVAFSSHAVILPLIIFSQIAMFDRGNQKFSYYSIAIAVVVWFTAAVCFFIA-LPSQSWLWLVSIFNIIQAILTVIKYFPQTFLNFSRKSTNGFSIGNVLLDFSGGVFNYSQMVLQSIDQDSWVNFYGNIGKVLISLETIFYDSILICQHYVLY 729
            QV GW+ F++W+V+ YPQ+I N+RRKSV+GLS DF  LNLT   +Y ++N  L + P +Q+++  +Y  G + PV +ND  FS HAV L LI+  Q  +++RGNQ+ S+ SI   V+ W    V   +A +   +WL  +  F+ I+ I+T+IKYFPQ ++NF  KST G+SIG VLLDF+GG F+  QM LQS + D W   +G+  K  + + TIF+D +   QH+ LY
Sbjct:  128 QVIGWIYFMAWSVSFYPQVIQNWRRKSVIGLSFDFLALNLTGFVAYSVFNIGLLWVPYIQEEFLLKYPNG-VNPVDSNDAFFSLHAVALTLIVILQCCLYERGNQRVSWPSIGFLVLAWLFVLVTMIVAAVGITTWLQFLFCFSYIKLIITLIKYFPQAYMNFYYKSTKGWSIGGVLLDFTGGSFSLLQMFLQSYNNDQWTLIFGDPTKFGLGVFTIFFDVVFFIQHFYLY 357          
BLAST of Phvul.004G058300.4 vs. DB:Swiss
Match: CTNS_BOVIN (Cystinosin OS=Bos taurus OX=9913 GN=CTNS PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 9.193e-59
Identity = 99/231 (42.86%), Postives = 153/231 (66.23%), Query Frame = 1
Query:   40 QVFGWLAFLSWAVAGYPQIILNFRRKSVVGLSLDFALLNLTKQCSYLIYNASLYFSPVVQKQYFERYGYGQMIPVAANDVAFSSHAVILPLIIFSQIAMFDRGNQKFSYYSIAIAVVVW-FTAAVCFFIALPSQSWLWLVSIFNIIQAILTVIKYFPQTFLNFSRKSTNGFSIGNVLLDFSGGVFNYSQMVLQSIDQDSWVNFYGNIGKVLISLETIFYDSILICQHYVLY 729
            QV GW+ F++W+V+ YPQ+I N+RRKSVVGLS DF +LNL    +Y ++N  L++ P +++Q+  +Y  G + PV +NDV FS HAV L L++  Q  +++RG+Q+ S+ +I+  V+ W FT       A+ + +WL  +  F+ I+  +T++KYFPQ ++NF  KST G+SIGNVLLDF+GG F+  QM LQS + D W   +G+  K  + + +I +D +   QH+ LY
Sbjct:  128 QVIGWIYFVAWSVSFYPQVITNWRRKSVVGLSFDFVVLNLMGFVAYSVFNIGLFWVPSIKEQFLLKYPNG-VNPVDSNDVFFSLHAVALTLVVIVQCLLYERGSQRVSWLAISFLVLSWLFTLIALIMAAVGATTWLQFLFCFSYIKLAVTLVKYFPQAYMNFHYKSTEGWSIGNVLLDFTGGSFSLLQMFLQSYNNDQWTLIFGDPTKFGLGIFSIIFDVVFFIQHFCLY 357          
BLAST of Phvul.004G058300.4 vs. DB:Swiss
Match: CTNS_CAEEL (Cystinosin homolog OS=Caenorhabditis elegans OX=6239 GN=ctns-1 PE=3 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 1.403e-51
Identity = 104/284 (36.62%), Postives = 155/284 (54.58%), Query Frame = 1
Query:   13 KSFPLEVTYQVFGWLAFLSWAVAGYPQIILNFRRKSVVGLSLDFALLNLTKQCSYLIYNASLYFSPVVQKQYFERYGYGQMIPVAANDVAFSSHAVILPLIIFSQIAMFDRGNQKFSYYSIAIAVVV---WFTAAVCFFIALPSQSWLWLVSIFNIIQAILTVIKYFPQTFLNFSRKSTNGFSIGNVLLDFSGGVFNYSQMVLQSIDQDSWVNFYGNIGKVLISLETIFYDSILICQHYVLYPDNKKGLPSKSSEEIRQPLICASPIDQEQINGSVISSHQSPP 855
            +S  L +  Q+ GW  F +W+++ YPQ+ LNF+RKSVVGL+ DF  LNL   C+Y I+N  +Y++  V+ +Y          PV  NDV F+ HA +   I   Q   ++R NQ  S   IA+ +V+    F +A      L     L  V+  + I+  +T  KYFPQ + N++RKST G+SIGN++LDF+GG  +  QM+LQ+++ + W  FY N  K  +   +IF+D I + QHYVLYP+ +  +P      +  P       D EQ  G   S   + P
Sbjct:  121 RSHFLAILIQIVGWTYFFAWSISFYPQMYLNFKRKSVVGLNFDFLSLNLVGFCAYAIFNLLMYYNSHVKNEY-NIVNPRSPPPVLLNDVVFAVHAFLACFITILQCLFYERDNQSVSSKCIALMIVLISFGFCSAAA--TVLRKIQLLSFVTSLSYIKMAVTCCKYFPQAYFNYTRKSTVGWSIGNIMLDFTGGTLDILQMILQAVNVNDWSAFYANPVKFGLGFVSIFFDIIFMVQHYVLYPNAE--VPHNEYHGVDNPNPDNIARDAEQYAGDSESMESTEP 399          
BLAST of Phvul.004G058300.4 vs. DB:Swiss
Match: CTNS_DROME (Cystinosin homolog OS=Drosophila melanogaster OX=7227 GN=CG17119 PE=1 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 1.541e-47
Identity = 96/252 (38.10%), Postives = 143/252 (56.75%), Query Frame = 1
Query:   13 KSFPLEVTYQVFGWLAFLSWAVAGYPQIILNFRRKSVVGLSLDFALLNLTKQCSYLIYNASLYFSPVVQKQYFERYGYGQMIPVAANDVAFSSHAVILPLIIFSQIAMFDRGNQKFSYYSIAIAVVVWFTAAVCFFIALPSQS---WLWLVSIFNIIQAILTVIKYFPQTFLNFSRKSTNGFSIGNVLLDFSGGVFNYSQMVLQSIDQDSWVNFYGNIGKVLISLETIFYDSILICQHYVLYPDNKKGLPSK 759
            KS  L  T  +FGW+ F++W+V+ YPQI  N+RRKSV GL+ DF  LN+     Y ++N  LYF   +Q +Y  RY  G + PV  NDV FS HA+    I   Q   + R  Q+ S+  IA  ++  F   V     L   S   WL  +   + ++  +T+IKY PQ  +N+ RKST+G+SIGN+LLDF+GG  +  QM+L + + D WV+ +G+  K  + L ++ +D   + QHYV Y  +++   S 
Sbjct:  124 KSRALIYTSIIFGWVYFVAWSVSFYPQIWSNYRRKSVEGLNFDFLALNIVGFTLYSMFNCGLYFIEDLQNEYEVRYPLG-VNPVMLNDVVFSLHAMFATCITILQCFFYQRAQQRVSF--IAYGILAIFAVVVVVSAGLAGGSVIHWLDFLYYCSYVKLTITIIKYVPQALMNYRRKSTSGWSIGNILLDFTGGTLSMLQMILNAHNYDDWVSIFGDPTKFGLGLFSVLFDVFFMLQHYVFYRHSRESSSSD 372          
BLAST of Phvul.004G058300.4 vs. DB:Swiss
Match: CTNS_CAEBR (Cystinosin homolog OS=Caenorhabditis briggsae OX=6238 GN=ctns-1 PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 4.517e-44
Identity = 96/258 (37.21%), Postives = 141/258 (54.65%), Query Frame = 1
Query:   13 KSFPLEVTYQVFGWLAFLSWAVAGYPQIILNFRRKSVVGLSLDFALLNLTKQCSYLIYNASLYFSPVVQKQYFERYGYGQMIPVAANDVAFSSHAVILPLIIFSQIAMFDRGNQKFSYYSIAIAV-VVWFTAAVCFFIALPSQSWLWLVSIFNIIQAILTVIKYFPQTFLNFSRKSTNGFSIGNVLLDFSGGVFNYSQMVLQSIDQDSWVNFYGNIGKVLISLETIFYDSILICQHYVLYPDNKKGLPSKSSEEIRQP 783
            +S  L +  Q+ GW  F +W+V+ YPQ+ LNF+RKSVVGL+ DF  LNL    +Y ++N  +Y++  V K  +         PV  NDV F+ HA +   +   Q   ++R  Q+ S   I + + +V F         L   + L  V   + I+  +T  KYFPQ + N+ RKST G+SIGN+LLDF+GG  +  QMVLQ+I+ + W  FY N  K  +   +IF+D I + QHY LYPD +  +P      +  P
Sbjct:  120 RSHWLAILIQIVGWTYFAAWSVSFYPQMYLNFKRKSVVGLNFDFLSLNLVGFGAYAMFNLLMYYNSHV-KNIYSMENPRSPPPVLLNDVVFAVHAFLACFVTILQCIFYERDQQRISTKCIILIIGLVSFGFVSVVVTVLNKITILDFVVSLSYIKMAVTCCKYFPQAYFNYQRKSTVGWSIGNILLDFTGGSLDILQMVLQAINVNDWSAFYANPVKFGLGFVSIFFDIIFMIQHYALYPDAE--VPHNEYHGVDNP 374          
BLAST of Phvul.004G058300.4 vs. DB:Swiss
Match: ERS1_YEAST (Cystine transporter OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=ERS1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.432e-14
Identity = 72/258 (27.91%), Postives = 127/258 (49.22%), Query Frame = 1
Query:   40 QVFGWLAFLSWAVAGYPQIILNFRRKSVVGLSLDFALLNLTKQCSYLIYNASLYFSPVVQKQYFERYGYGQMIPVAANDVAFSSHAVILPLIIFSQIAMFDR-------GNQKFS--YYSIAIAVVVWFTAAVCFFIA-------LPSQSWLWLVSIFNIIQAILTVIKYFPQTFLNFSRKSTNGFSIGNVLLDFSGGVFNYSQMVLQ-SIDQD-SWVNFYGNIGKVLISLETIFYDSILICQHYVLYPDNKKGLPSK 759
             + G +   SW+++ YP II N+R KS   +S+DF +LN T   SYL+   S++      K   +    G+   +   D  +  H  ++ +++ +Q+    R       G++K +  Y  I +A +  F+     F+          S++  +  ++F +++  +++IKY PQ   N +RKS + F I  V LD +GG+ +  Q++ Q S DQ  S   F  N GKV +S+ T+ ++ I I Q +V Y      L S+
Sbjct:    6 DILGIVYVTSWSISMYPPIITNWRHKSASAISMDFVMLN-TAGYSYLV--ISIFLQLYCWKMTGDESDLGR-PKLTQFDFWYCLHGCLMNVVLLTQVVAGARIWRFPGKGHRKMNPWYLRILLASLAIFSLLTVQFMYSNYWYDWHNSRTLAYCNNLF-LLKISMSLIKYIPQVTHNSTRKSMDCFPIQGVFLDVTGGIASLLQLIWQLSNDQGFSLDTFVTNFGKVGLSMVTLIFNFIFIMQWFV-YRSRGHDLASE 257          
The following BLAST results are available for this feature:
BLAST of Phvul.004G058300.4 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot)
Total hits: 9
Match NameE-valueIdentityDescription
CTNS_ARATH2.718e-11960.53Cystinosin homolog OS=Arabidopsis thaliana OX=3702... [more]
CTNS_DICDI5.641e-6042.67Cystinosin homolog OS=Dictyostelium discoideum OX=... [more]
CTNS_HUMAN3.500e-5942.08Cystinosin OS=Homo sapiens OX=9606 GN=CTNS PE=1 SV... [more]
CTNS_MOUSE3.654e-5944.59Cystinosin OS=Mus musculus OX=10090 GN=Ctns PE=1 S... [more]
CTNS_BOVIN9.193e-5942.86Cystinosin OS=Bos taurus OX=9913 GN=CTNS PE=2 SV=1[more]
CTNS_CAEEL1.403e-5136.62Cystinosin homolog OS=Caenorhabditis elegans OX=62... [more]
CTNS_DROME1.541e-4738.10Cystinosin homolog OS=Drosophila melanogaster OX=7... [more]
CTNS_CAEBR4.517e-4437.21Cystinosin homolog OS=Caenorhabditis briggsae OX=6... [more]
ERS1_YEAST1.432e-1427.91Cystine transporter OS=Saccharomyces cerevisiae (s... [more]
back to top
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006603PQ-loop repeatSMARTSM00679ctnscoord: 165..196
e-value: 4.3E-6
score: 36.2
coord: 26..57
e-value: 1.4E-4
score: 31.2
IPR006603PQ-loop repeatPFAMPF04193PQ-loopcoord: 152..208
e-value: 3.2E-14
score: 52.4
coord: 14..70
e-value: 4.1E-17
score: 61.7

Sequences
The following sequences are available for this feature:

protein sequence of Phvul.004G058300.4_Pv_G19833_v2.1

>Phvul.004G058300.4_Pv_G19833_v2.1 ID=Phvul.004G058300.4_Pv_G19833_v2.1; Name=Phvul.004G058300.4_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=288bp
MVPWKSFPLEVTYQVFGWLAFLSWAVAGYPQIILNFRRKSVVGLSLDFAL
LNLTKQCSYLIYNASLYFSPVVQKQYFERYGYGQMIPVAANDVAFSSHAV
ILPLIIFSQIAMFDRGNQKFSYYSIAIAVVVWFTAAVCFFIALPSQSWLW
LVSIFNIIQAILTVIKYFPQTFLNFSRKSTNGFSIGNVLLDFSGGVFNYS
QMVLQSIDQDSWVNFYGNIGKVLISLETIFYDSILICQHYVLYPDNKKGL
PSKSSEEIRQPLICASPIDQEQINGSVISSHQSPPEV*
back to top

mRNA from alignment at Chr04:8083845..8087602-

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Phvul.004G058300.4_Pv_G19833_v2.1 ID=Phvul.004G058300.4_Pv_G19833_v2.1; Name=Phvul.004G058300.4; organism=Phaseolus vulgaris; type=mRNA; length=3758bp; location=Sequence derived from: Chr04:8083845..8087602- (Phaseolus vulgaris
AGACATCCATTGAAAGACAAACTCATTGATTCCTCTGTGGCAGAAAGAGA GACAAAGAAATGGTTCCTTGGAAGTCATTTCCATTAGAAGTGACTTACCA AGTATTTGGTTGGTTAGCTTTTCTTTCATGGGCAGTTGCCGGCTACCCAC AAATCATCCTCAATTTTCGTAGGAAAAGGTTGTTTTTTTCATGTTCTATA ATCATTGCTGTTGTTGTTTATCCTTTGGGATGGATTCTTAAGTGGTTTTG TATTCAAACTCAGTGTGGTGGGATTAAGCTTGGATTTTGCGCTTCTTAAC TTAACCAAGCAGTGTTCATATCTCATATACAATGCTTCCCTCTACTTTAG CCCTGTTGTTCAGAAGCAGTATTTTGAGAGGTATGGTTATGGACAGGTAT GTTCTTTTCAACCAAGACTTTAACTTCAATGCCATCATACATAAGTTTAT ATTAGTATTTAATGATACAAATTGATTATGTAATTTTGGTTTATAACCTC TTGTTACTGCAGATGATTCCTGTTGCAGCTAATGATGTTGCTTTCTCTAG TCATGCAGTCATATTACCTCTAATTATATTTTCCCAAATTGCTATGTTTG ATGTAAGTATTATCACAAGTTCTTCTTAAGAGATTGTATTTTCCTCTCAT GAACATACGTTTTAGCTCCTGGTCTTATTAATTCAAAGACAGTGAATGAT CTGCTACTAATTTGCAGCGTGGAAATCAGAAATTTTCCTACTATTCCATT GCAATAGCTGTTGTAGTGTGGTTTACTGCTGCTGTTTGCTTTTTCATAGC ATTGCCTAGCCAATCTTGGCTTTGGCTAGTCTCCATCTTCAAGTAAGTTT CACTCTTTCTGTGATAGACGGCTGTAAATCATGTAGTAAAGCTTAGTCAG ATGGTTAGATGGTTAGATGATGTGAAGAAGTTAGATCATCTAGTACGTGT TTGTTATACTTGTCTTAACGGTTTTTGTTTTGAATGGTCTTGTATTTCTT CTACAATAGCATCTATATATATAAAGTTCTTGTGATCTCTGTAAAGATAT TGTTGTGTGAGAGTTCTTTGTGTATAGACATTTTGTTATCAAATAAAGTG TTTACTTCAATCTTGTTCTTATTTTTTTCCTTTATTATTATTGAGAACCC AATAATTGGCATCGTTTGTGAGGACAAAAAAGAAAAGTCAAGAAGATAAA GAAATGGTCACCAAGTTTGACATCGATAAGTTTTTTCGGGAAGAACGACT TTGGGTTGTGGAGACTCAAGATGGAAGTCATCTTAATTCAATAAGGTTGT GTTGATGCTCTGGAGGGTGAAACGAACATGCCAACATCTATGTCTCAGAA GGAGAAGATTGACATGATCAACAGAGCCGAGAGCTTCATAATCTTGTACC TGGTTATAAGGCACCGAGAGAAGTCACAAAGGAGAAAACTGTTGCGTCGA TGTGGGGGAAGCTTGAGTCATTGTATATGACCACATCATTGGCACACATA TTCTTTTTGAAGCAATAATTGTATTCGTTCAGAATGATCGAGTCAAAAAT TATGGTTGAACAGTTGGTAGATTTCAATAAGATCTTGGAGATAAGGTTTT ACTTCTTCTTAACACCTTACCCTAGACGTAGGAACATTTTAAAGATGTTT TGTTGTTCGGAAAGTTGCAGGGTATTTGCTCCAAGTTCTAATGATACAAA TAAATATAAGGGCACATATGTTGTTTCCATTTTAAAACCTTTATTCCTAT TGGTGCCGTTTATTAATCAAGGTTAAAAAAGGGCATCATCAATATATTAT TCTCAAGCACTTTATTCTGTTTTCAATATGTGATTATTGCACTCTTTGCA CTTTCTAAGATTCACATTATGTGTTGGGGTAAGCAAGATGCCACTGAGCT TAGAGTACTTAATTAATAGTCAAGCTCAAACTTGGCTTAAAGAAATTTTG CAGAACCATGAAGTAGAGGCTATGGCTGAATAGTATGCAGTCTTTTCACA TATTTATGACTACTGATATATAAAAGTTTGGAACTATACATTTGAAGTGT GATTATTTCTCATATCTATGAATCAACAACCGTTGAGGCTTCCGAACTTG TTCAAAAAGGGACGGTGTTGTAAATTGAGTCAAGTTTCCTTTTGGAACAG TTGAGCCATTTCAGAGTATCACAGTACAAAACATCAACCTCTTGAAGGAC CTTTGAATGGGATGTTGATATTCTTCTGTCTCTTCATATTTATTTATTTA ATATAATTGTTAACATTATGGAGTTCTTTTTCTTTTTCTATGCTATAATT CCATTTCCCTCTAATAATTTGATGAAATCAATTATACTGCAGCATAATTC AAGCAATTTTGACCGTCATCAAATATTTTCCACAGGTCAGAATGCCTTAA CCTCCTCTATATCATGTTCTACGCATAGCATGTGTACAAAATTGGTACCA TGCCCCAAAAGTTGTTTTTCCTGTTTACTCATAAGCAAATAGCTTCCCAC GTTTTGTAGCATAATTGACCTTATTTGATGTTTTCTTAATGAGTTTCCAA ACATGCATATGATCTTAGAATTTGACTGCATTTGCTTACTTCAGATTTTC GTACTTTTTGGTGACTCATTGGTAATATTCTGACAAATATGTTGTGTATT TTCCATATTCTCAGTTAACAGAAGAAGATTGAATGTGATTCTAGTCCAAA TTTATATATTACTTACAGTCTAATTAAGAAAAGAAATAATAGGTAATTAA AGTAAGAAATAACAGATAATTAAATTAAAGCTATATAAATCAAATTAAAT CTTCAAAAGATAACAAATTTGTCTTCATAAATAGAAAACAGAATCAGGGA ATAATTATCTTCTAAGTATGCAACATACTCATCTTATAAGTTCTTACAGT CTTTGTAGTTTGACAGAATAACACTGACAAACAAAACTAATAAGGAAATG ATATTTATCTGGTGTAGTTACTGAGTAATGGTTACTTGCTTATGAAATCT AGACATTCCTGAACTTCTCGAGGAAGAGCACAAATGGATTTAGCATTGGC AATGTTCTACTTGATTTTTCTGGAGGTGTCTTTAATTATTCACAAATGGT TCTGCAGTCCATAGACCAAGGTGTGTGAAGTAAATATGAATTTGACCCTC TCATCAGATTTTATCTTTGAATATCTACAATGAATTTCAATTTTATCCAA ATGTAGATTCCTGGGTGAACTTCTATGGAAACATTGGGAAAGTACTTATA TCCTTGGTATGAAATTCTGTGCTTATACTCCATATTCTTCTTGGGAAATC ATTGCTGTTTCTTCAATTTAAATCATGTATTAAGTATTACATTCCAAATG TATTTTCAGATTAAACTACAAAACTTGTTGAACATATCATTATTTATTAT TACGTACTTTTAAGAAGTATATCTTAGAAGATAAATGACAGAATGAATGC AATTTCTTAGTCTTTGAATATTATAAAGACTCAGTGGACCACTTGTATCA CAGATGATGTATATCATGAATTCTGATTTGTTTTAACCATTGTAGGAAAC AATATTCTATGATTCTATCTTAATATGTCAACATTATGTTCTGTACCCTG ATAACAAGAAAGGGCTTCCTTCTAAAAGTTCTGAAGAAATCAGGCAACCA CTAATCTGTGCAAGTCCAATTGATCAAGAACAAATCAATGGTTCAGTTAT ATCTTCACATCAATCTCCACCAGAAGTTTGAGGTATATATAACTTGGATC ATGCAGTG
back to top

Coding sequence (CDS) from alignment at Chr04:8083845..8087602-

>Phvul.004G058300.4_Pv_G19833_v2.1 ID=Phvul.004G058300.4_Pv_G19833_v2.1; Name=Phvul.004G058300.4; organism=Phaseolus vulgaris; type=CDS; length=864bp; location=Sequence derived from: Chr04:8083845..8087602- (Phaseolus vulgaris
ATGGTTCCTTGGAAGTCATTTCCATTAGAAGTGACTTACCAAGTATTTGG
TTGGTTAGCTTTTCTTTCATGGGCAGTTGCCGGCTACCCACAAATCATCC
TCAATTTTCGTAGGAAAAGTGTGGTGGGATTAAGCTTGGATTTTGCGCTT
CTTAACTTAACCAAGCAGTGTTCATATCTCATATACAATGCTTCCCTCTA
CTTTAGCCCTGTTGTTCAGAAGCAGTATTTTGAGAGGTATGGTTATGGAC
AGATGATTCCTGTTGCAGCTAATGATGTTGCTTTCTCTAGTCATGCAGTC
ATATTACCTCTAATTATATTTTCCCAAATTGCTATGTTTGATCGTGGAAA
TCAGAAATTTTCCTACTATTCCATTGCAATAGCTGTTGTAGTGTGGTTTA
CTGCTGCTGTTTGCTTTTTCATAGCATTGCCTAGCCAATCTTGGCTTTGG
CTAGTCTCCATCTTCAACATAATTCAAGCAATTTTGACCGTCATCAAATA
TTTTCCACAGACATTCCTGAACTTCTCGAGGAAGAGCACAAATGGATTTA
GCATTGGCAATGTTCTACTTGATTTTTCTGGAGGTGTCTTTAATTATTCA
CAAATGGTTCTGCAGTCCATAGACCAAGATTCCTGGGTGAACTTCTATGG
AAACATTGGGAAAGTACTTATATCCTTGGAAACAATATTCTATGATTCTA
TCTTAATATGTCAACATTATGTTCTGTACCCTGATAACAAGAAAGGGCTT
CCTTCTAAAAGTTCTGAAGAAATCAGGCAACCACTAATCTGTGCAAGTCC
AATTGATCAAGAACAAATCAATGGTTCAGTTATATCTTCACATCAATCTC
CACCAGAAGTTTGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR006603PQ-loop_rpt