Phvul.004G058300.4
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Phvul.004G058300.4 vs. DB:Swiss
Match: CTNS_ARATH (Cystinosin homolog OS=Arabidopsis thaliana OX=3702 GN=At5g40670 PE=2 SV=1) HSP 1 Score: 345.895 bits (886), Expect = 2.718e-119 Identity = 161/266 (60.53%), Postives = 208/266 (78.20%), Query Frame = 1 Query: 1 MVPWKSFPLEVTYQVFGWLAFLSWAVAGYPQIILNFRRKSVVGLSLDFALLNLTKQCSYLIYNASLYFSPVVQKQYFERYGYGQMIPVAANDVAFSSHAVILPLIIFSQIAMFDRGNQKFSYYSIAIAVVVWFTAAVCFFIALPSQSWLWLVSIFNIIQAILTVIKYFPQTFLNFSRKSTNGFSIGNVLLDFSGGVFNYSQMVLQSIDQDSWVNFYGNIGKVLISLETIFYDSILICQHYVLYPDNKKGLPSKSSEEIRQPLICAS 798 M W S PLE++Y++ GW+AF SW+++ YPQ+ILNFRR+SVVGL+ DF +LNLTK SY+IYN LYFSPV+QKQYF+ YG +MIPVAANDVAFS HAV++ + QI +++RG QK S +I I VVVW AA+CFFIALP+ SWLWL+SIFN IQ +T +KY PQ +NF+RKST G+SIGN+LLDF+GG+ NY QMV+QSIDQ+SW NFYGN+GK L+SL +IF+D + + QHYVLYP+ K ++ EE +PLI +S Sbjct: 1 MASWNSIPLEISYEIVGWIAFASWSISFYPQLILNFRRRSVVGLNFDFVMLNLTKHSSYMIYNVCLYFSPVIQKQYFDTYGDKEMIPVAANDVAFSIHAVVMTAVTLFQIFIYERGPQKVSRLAIGIVVVVWGFAAICFFIALPTHSWLWLISIFNSIQVFMTCVKYIPQAKMNFTRKSTVGWSIGNILLDFTGGLANYLQMVIQSIDQNSWKNFYGNMGKTLLSLISIFFDILFMFQHYVLYPEKKVSKSPETGEESNEPLIDSS 266
BLAST of Phvul.004G058300.4 vs. DB:Swiss
Match: CTNS_DICDI (Cystinosin homolog OS=Dictyostelium discoideum OX=44689 GN=ctns PE=3 SV=1) HSP 1 Score: 195.667 bits (496), Expect = 5.641e-60 Identity = 99/232 (42.67%), Postives = 151/232 (65.09%), Query Frame = 1 Query: 49 GWLAFLSWAVAGYPQIILNFRRKSVVGLSLDFALLNLTKQCSYLIYNASLYFSPVVQKQYFERYGYGQMIPVAANDVAFSSHAVILPLIIFSQIAMFDRGNQKFSYYSIAIAVVVWFTAAVCFFIALPSQ-SWLWLVSIFNIIQAILTVIKYFPQTFLNFSRKSTNGFSIGNVLLDFSGGVFNYSQMVLQSIDQDSWVNFYGNIGKVLISLETIFYDSILICQHYVLYPDNK 741 GW+ F W+++ YPQ+ILNFR+K+V+GLS DF L N+T Y ++N+ LYF +V+ +Y+++YG IPV +D+AF+ H +L I Q ++DRGNQK S I IA ++W + V + + +WLW+++ ++ ++ +T IKY PQ +LNF KST+G+S+ NVLLDFSGGV + QM L D +W F G+ K+ +SL +I +D + I QHY+LY + K Sbjct: 12 GWIYFACWSLSFYPQVILNFRKKNVIGLSFDFLLFNITGYACYSVFNSVLYFDKLVKNEYYDKYG--PPIPVQQSDIAFAIHGFVLTAITIIQCFIYDRGNQKNSKLGIGIATLIWVSLIVMTILGFSNVFTWLWVINYYSYVKLFITFIKYIPQAYLNFKNKSTSGWSVHNVLLDFSGGVLSLLQMFLDVADSGNWNIFTGDPVKLGLSLFSIAFDILFIIQHYILYRNPK 241
BLAST of Phvul.004G058300.4 vs. DB:Swiss
Match: CTNS_HUMAN (Cystinosin OS=Homo sapiens OX=9606 GN=CTNS PE=1 SV=2) HSP 1 Score: 196.052 bits (497), Expect = 3.500e-59 Identity = 101/240 (42.08%), Postives = 156/240 (65.00%), Query Frame = 1 Query: 13 KSFPLEVTYQVFGWLAFLSWAVAGYPQIILNFRRKSVVGLSLDFALLNLTKQCSYLIYNASLYFSPVVQKQYFERYGYGQMIPVAANDVAFSSHAVILPLIIFSQIAMFDRGNQKFSYYSIAIAVVVWFTAAVCFFIA-LPSQSWLWLVSIFNIIQAILTVIKYFPQTFLNFSRKSTNGFSIGNVLLDFSGGVFNYSQMVLQSIDQDSWVNFYGNIGKVLISLETIFYDSILICQHYVLY 729 +S + + QV GW+ F++W+++ YPQ+I+N+RRKSV+GLS DF LNLT +Y ++N L + P +++Q+ +Y G + PV +NDV FS HAV+L LII Q +++RG Q+ S+ +I V+ W A V +A + +WL + F+ I+ +T++KYFPQ ++NF KST G+SIGNVLLDF+GG F+ QM LQS + D W +G+ K + + +I +D + QH+ LY Sbjct: 119 RSSAISIINQVIGWIYFVAWSISFYPQVIMNWRRKSVIGLSFDFVALNLTGFVAYSVFNIGLLWVPYIKEQFLLKYPNG-VNPVNSNDVFFSLHAVVLTLIIIVQCCLYERGGQRVSWPAIGFLVLAWLFAFVTMIVAAVGVTTWLQFLFCFSYIKLAVTLVKYFPQAYMNFYYKSTEGWSIGNVLLDFTGGSFSLLQMFLQSYNNDQWTLIFGDPTKFGLGVFSIVFDVVFFIQHFCLY 357
BLAST of Phvul.004G058300.4 vs. DB:Swiss
Match: CTNS_MOUSE (Cystinosin OS=Mus musculus OX=10090 GN=Ctns PE=1 SV=1) HSP 1 Score: 196.052 bits (497), Expect = 3.654e-59 Identity = 103/231 (44.59%), Postives = 150/231 (64.94%), Query Frame = 1 Query: 40 QVFGWLAFLSWAVAGYPQIILNFRRKSVVGLSLDFALLNLTKQCSYLIYNASLYFSPVVQKQYFERYGYGQMIPVAANDVAFSSHAVILPLIIFSQIAMFDRGNQKFSYYSIAIAVVVWFTAAVCFFIA-LPSQSWLWLVSIFNIIQAILTVIKYFPQTFLNFSRKSTNGFSIGNVLLDFSGGVFNYSQMVLQSIDQDSWVNFYGNIGKVLISLETIFYDSILICQHYVLY 729 QV GW+ F++W+V+ YPQ+I N+RRKSV+GLS DF LNLT +Y ++N L + P +Q+++ +Y G + PV +ND FS HAV L LI+ Q +++RGNQ+ S+ SI V+ W V +A + +WL + F+ I+ I+T+IKYFPQ ++NF KST G+SIG VLLDF+GG F+ QM LQS + D W +G+ K + + TIF+D + QH+ LY Sbjct: 128 QVIGWIYFMAWSVSFYPQVIQNWRRKSVIGLSFDFLALNLTGFVAYSVFNIGLLWVPYIQEEFLLKYPNG-VNPVDSNDAFFSLHAVALTLIVILQCCLYERGNQRVSWPSIGFLVLAWLFVLVTMIVAAVGITTWLQFLFCFSYIKLIITLIKYFPQAYMNFYYKSTKGWSIGGVLLDFTGGSFSLLQMFLQSYNNDQWTLIFGDPTKFGLGVFTIFFDVVFFIQHFYLY 357
BLAST of Phvul.004G058300.4 vs. DB:Swiss
Match: CTNS_BOVIN (Cystinosin OS=Bos taurus OX=9913 GN=CTNS PE=2 SV=1) HSP 1 Score: 194.897 bits (494), Expect = 9.193e-59 Identity = 99/231 (42.86%), Postives = 153/231 (66.23%), Query Frame = 1 Query: 40 QVFGWLAFLSWAVAGYPQIILNFRRKSVVGLSLDFALLNLTKQCSYLIYNASLYFSPVVQKQYFERYGYGQMIPVAANDVAFSSHAVILPLIIFSQIAMFDRGNQKFSYYSIAIAVVVW-FTAAVCFFIALPSQSWLWLVSIFNIIQAILTVIKYFPQTFLNFSRKSTNGFSIGNVLLDFSGGVFNYSQMVLQSIDQDSWVNFYGNIGKVLISLETIFYDSILICQHYVLY 729 QV GW+ F++W+V+ YPQ+I N+RRKSVVGLS DF +LNL +Y ++N L++ P +++Q+ +Y G + PV +NDV FS HAV L L++ Q +++RG+Q+ S+ +I+ V+ W FT A+ + +WL + F+ I+ +T++KYFPQ ++NF KST G+SIGNVLLDF+GG F+ QM LQS + D W +G+ K + + +I +D + QH+ LY Sbjct: 128 QVIGWIYFVAWSVSFYPQVITNWRRKSVVGLSFDFVVLNLMGFVAYSVFNIGLFWVPSIKEQFLLKYPNG-VNPVDSNDVFFSLHAVALTLVVIVQCLLYERGSQRVSWLAISFLVLSWLFTLIALIMAAVGATTWLQFLFCFSYIKLAVTLVKYFPQAYMNFHYKSTEGWSIGNVLLDFTGGSFSLLQMFLQSYNNDQWTLIFGDPTKFGLGIFSIIFDVVFFIQHFCLY 357
BLAST of Phvul.004G058300.4 vs. DB:Swiss
Match: CTNS_CAEEL (Cystinosin homolog OS=Caenorhabditis elegans OX=6239 GN=ctns-1 PE=3 SV=2) HSP 1 Score: 177.178 bits (448), Expect = 1.403e-51 Identity = 104/284 (36.62%), Postives = 155/284 (54.58%), Query Frame = 1 Query: 13 KSFPLEVTYQVFGWLAFLSWAVAGYPQIILNFRRKSVVGLSLDFALLNLTKQCSYLIYNASLYFSPVVQKQYFERYGYGQMIPVAANDVAFSSHAVILPLIIFSQIAMFDRGNQKFSYYSIAIAVVV---WFTAAVCFFIALPSQSWLWLVSIFNIIQAILTVIKYFPQTFLNFSRKSTNGFSIGNVLLDFSGGVFNYSQMVLQSIDQDSWVNFYGNIGKVLISLETIFYDSILICQHYVLYPDNKKGLPSKSSEEIRQPLICASPIDQEQINGSVISSHQSPP 855 +S L + Q+ GW F +W+++ YPQ+ LNF+RKSVVGL+ DF LNL C+Y I+N +Y++ V+ +Y PV NDV F+ HA + I Q ++R NQ S IA+ +V+ F +A L L V+ + I+ +T KYFPQ + N++RKST G+SIGN++LDF+GG + QM+LQ+++ + W FY N K + +IF+D I + QHYVLYP+ + +P + P D EQ G S + P Sbjct: 121 RSHFLAILIQIVGWTYFFAWSISFYPQMYLNFKRKSVVGLNFDFLSLNLVGFCAYAIFNLLMYYNSHVKNEY-NIVNPRSPPPVLLNDVVFAVHAFLACFITILQCLFYERDNQSVSSKCIALMIVLISFGFCSAAA--TVLRKIQLLSFVTSLSYIKMAVTCCKYFPQAYFNYTRKSTVGWSIGNIMLDFTGGTLDILQMILQAVNVNDWSAFYANPVKFGLGFVSIFFDIIFMVQHYVLYPNAE--VPHNEYHGVDNPNPDNIARDAEQYAGDSESMESTEP 399
BLAST of Phvul.004G058300.4 vs. DB:Swiss
Match: CTNS_DROME (Cystinosin homolog OS=Drosophila melanogaster OX=7227 GN=CG17119 PE=1 SV=2) HSP 1 Score: 166.392 bits (420), Expect = 1.541e-47 Identity = 96/252 (38.10%), Postives = 143/252 (56.75%), Query Frame = 1 Query: 13 KSFPLEVTYQVFGWLAFLSWAVAGYPQIILNFRRKSVVGLSLDFALLNLTKQCSYLIYNASLYFSPVVQKQYFERYGYGQMIPVAANDVAFSSHAVILPLIIFSQIAMFDRGNQKFSYYSIAIAVVVWFTAAVCFFIALPSQS---WLWLVSIFNIIQAILTVIKYFPQTFLNFSRKSTNGFSIGNVLLDFSGGVFNYSQMVLQSIDQDSWVNFYGNIGKVLISLETIFYDSILICQHYVLYPDNKKGLPSK 759 KS L T +FGW+ F++W+V+ YPQI N+RRKSV GL+ DF LN+ Y ++N LYF +Q +Y RY G + PV NDV FS HA+ I Q + R Q+ S+ IA ++ F V L S WL + + ++ +T+IKY PQ +N+ RKST+G+SIGN+LLDF+GG + QM+L + + D WV+ +G+ K + L ++ +D + QHYV Y +++ S Sbjct: 124 KSRALIYTSIIFGWVYFVAWSVSFYPQIWSNYRRKSVEGLNFDFLALNIVGFTLYSMFNCGLYFIEDLQNEYEVRYPLG-VNPVMLNDVVFSLHAMFATCITILQCFFYQRAQQRVSF--IAYGILAIFAVVVVVSAGLAGGSVIHWLDFLYYCSYVKLTITIIKYVPQALMNYRRKSTSGWSIGNILLDFTGGTLSMLQMILNAHNYDDWVSIFGDPTKFGLGLFSVLFDVFFMLQHYVFYRHSRESSSSD 372
BLAST of Phvul.004G058300.4 vs. DB:Swiss
Match: CTNS_CAEBR (Cystinosin homolog OS=Caenorhabditis briggsae OX=6238 GN=ctns-1 PE=3 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 4.517e-44 Identity = 96/258 (37.21%), Postives = 141/258 (54.65%), Query Frame = 1 Query: 13 KSFPLEVTYQVFGWLAFLSWAVAGYPQIILNFRRKSVVGLSLDFALLNLTKQCSYLIYNASLYFSPVVQKQYFERYGYGQMIPVAANDVAFSSHAVILPLIIFSQIAMFDRGNQKFSYYSIAIAV-VVWFTAAVCFFIALPSQSWLWLVSIFNIIQAILTVIKYFPQTFLNFSRKSTNGFSIGNVLLDFSGGVFNYSQMVLQSIDQDSWVNFYGNIGKVLISLETIFYDSILICQHYVLYPDNKKGLPSKSSEEIRQP 783 +S L + Q+ GW F +W+V+ YPQ+ LNF+RKSVVGL+ DF LNL +Y ++N +Y++ V K + PV NDV F+ HA + + Q ++R Q+ S I + + +V F L + L V + I+ +T KYFPQ + N+ RKST G+SIGN+LLDF+GG + QMVLQ+I+ + W FY N K + +IF+D I + QHY LYPD + +P + P Sbjct: 120 RSHWLAILIQIVGWTYFAAWSVSFYPQMYLNFKRKSVVGLNFDFLSLNLVGFGAYAMFNLLMYYNSHV-KNIYSMENPRSPPPVLLNDVVFAVHAFLACFVTILQCIFYERDQQRISTKCIILIIGLVSFGFVSVVVTVLNKITILDFVVSLSYIKMAVTCCKYFPQAYFNYQRKSTVGWSIGNILLDFTGGSLDILQMVLQAINVNDWSAFYANPVKFGLGFVSIFFDIIFMIQHYALYPDAE--VPHNEYHGVDNP 374
BLAST of Phvul.004G058300.4 vs. DB:Swiss
Match: ERS1_YEAST (Cystine transporter OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=ERS1 PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 1.432e-14 Identity = 72/258 (27.91%), Postives = 127/258 (49.22%), Query Frame = 1 Query: 40 QVFGWLAFLSWAVAGYPQIILNFRRKSVVGLSLDFALLNLTKQCSYLIYNASLYFSPVVQKQYFERYGYGQMIPVAANDVAFSSHAVILPLIIFSQIAMFDR-------GNQKFS--YYSIAIAVVVWFTAAVCFFIA-------LPSQSWLWLVSIFNIIQAILTVIKYFPQTFLNFSRKSTNGFSIGNVLLDFSGGVFNYSQMVLQ-SIDQD-SWVNFYGNIGKVLISLETIFYDSILICQHYVLYPDNKKGLPSK 759 + G + SW+++ YP II N+R KS +S+DF +LN T SYL+ S++ K + G+ + D + H ++ +++ +Q+ R G++K + Y I +A + F+ F+ S++ + ++F +++ +++IKY PQ N +RKS + F I V LD +GG+ + Q++ Q S DQ S F N GKV +S+ T+ ++ I I Q +V Y L S+ Sbjct: 6 DILGIVYVTSWSISMYPPIITNWRHKSASAISMDFVMLN-TAGYSYLV--ISIFLQLYCWKMTGDESDLGR-PKLTQFDFWYCLHGCLMNVVLLTQVVAGARIWRFPGKGHRKMNPWYLRILLASLAIFSLLTVQFMYSNYWYDWHNSRTLAYCNNLF-LLKISMSLIKYIPQVTHNSTRKSMDCFPIQGVFLDVTGGIASLLQLIWQLSNDQGFSLDTFVTNFGKVGLSMVTLIFNFIFIMQWFV-YRSRGHDLASE 257 The following BLAST results are available for this feature:
BLAST of Phvul.004G058300.4 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot) Total hits: 9
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
Sequences
The
following sequences are available for this feature:
protein sequence of Phvul.004G058300.4_Pv_G19833_v2.1 >Phvul.004G058300.4_Pv_G19833_v2.1 ID=Phvul.004G058300.4_Pv_G19833_v2.1; Name=Phvul.004G058300.4_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=288bpback to top mRNA from alignment at Chr04:8083845..8087602- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Phvul.004G058300.4_Pv_G19833_v2.1 ID=Phvul.004G058300.4_Pv_G19833_v2.1; Name=Phvul.004G058300.4; organism=Phaseolus vulgaris; type=mRNA; length=3758bp; location=Sequence derived from: Chr04:8083845..8087602- (Phaseolus vulgarisback to top Coding sequence (CDS) from alignment at Chr04:8083845..8087602- >Phvul.004G058300.4_Pv_G19833_v2.1 ID=Phvul.004G058300.4_Pv_G19833_v2.1; Name=Phvul.004G058300.4; organism=Phaseolus vulgaris; type=CDS; length=864bp; location=Sequence derived from: Chr04:8083845..8087602- (Phaseolus vulgarisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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