Phvul.004G060500.1

Transcript Overview
NamePhvul.004G060500.1
Unique NamePhvul.004G060500.1_Pv_G19833_v2.1
TypemRNA
OrganismPhaseolus vulgaris (Common bean)
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr04supercontigChr04:8481737..8483114 -Phaseolus vulgaris G19833 genome v2.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Phaseolus vulgaris G19833 genome v2.12019-09-17
InterProScan: Phaseolus vulgaris G19833 genome v2.12019-10-18
BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot2019-10-18
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
pspvL049Pisum sativum Cameor genome v1aPisum sativum
pvvuR416Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caipvL0176Cicer arietinum ICC 4958 genome v2Cicer arietinum
caipvL0179Cicer arietinum ICC 4958 genome v2Cicer arietinum
capvL141Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
crpvL520Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
crpvL737Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
capvL456Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
aspvL295Vigna angularis Jingnong 6 genome v1.1Vigna angularis
pvzwsR405Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvzwsR419Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvvfhR425Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvtifR424Vicia faba cv. Tiffany genome v1.0Vicia faba
pvvrvR388Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvuaR369Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvssR478Vicia sativa cv. Studenica genome v1.0Vicia sativa
canpvL131Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjpvL028Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjpvL503Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carpvL131Cicer arietinum
ccapvL684Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapvL825Cajanus cajan cv. Asha genome v2.0Cajanus cajan
pvvumR483Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvvaR467Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvvaR512Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvasR482Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvstR477Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvpvfR390Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR426Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvvunR381Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
jg46004.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
XM_058922964.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Va10G049390.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
evm.model.Chr04.790Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vfaba.Tiffany.R1.1g092480.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Vfaba.Hedin2.R1.1g123640.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Vigun04g089300.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vigun04g089300.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
LR48_mrnaVigan10g205000Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Phvul.004G060500Phvul.004G060500_Pv_G19833_v2.1Phaseolus vulgarisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Phvul.004G060500.1Phvul.004G060500.1_Pv_G19833_v2.1-proteinPhaseolus vulgarispolypeptide
Phvul.004G060500.1_Pv_G19833_v2.1Phvul.004G060500.1_Pv_G19833_v2.1Phaseolus vulgarispolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.004G060500.1.v2.1.CDS.2Phvul.004G060500.1.v2.1.CDS.2_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.004G060500.1.v2.1.CDS.1Phvul.004G060500.1.v2.1.CDS.1_Pv_G19833_v2.1Phaseolus vulgarisCDS


Homology
The following BLAST results are available for this feature:
BLAST of Phvul.004G060500.1 vs.
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002100Transcription factor, MADS-boxSMARTSM00432madsneu2coord: 19..79
e-value: 5.4E-5
score: 32.6
IPR002100Transcription factor, MADS-boxPFAMPF00319SRF-TFcoord: 29..70
e-value: 3.8E-12
score: 45.5
IPR002100Transcription factor, MADS-boxPROSITEPS50066MADS_BOX_2coord: 19..70
score: 13.932
IPR036879Transcription factor, MADS-box superfamilyGENE3D3.40.1810.10coord: 31..119
e-value: 6.0E-10
score: 41.0
IPR036879Transcription factor, MADS-box superfamilySUPERFAMILY55455SRF-likecoord: 22..96

Sequences
The following sequences are available for this feature:

protein sequence of Phvul.004G060500.1_Pv_G19833_v2.1

>Phvul.004G060500.1_Pv_G19833_v2.1 ID=Phvul.004G060500.1_Pv_G19833_v2.1; Name=Phvul.004G060500.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=313bp
MSDSEESLERKTWIQKQENGSCKITLKHISNEKFRKTTFLRRKRGLMKKI
SEFSKKCGGEHCLIVFDDDNGDVGPMTSPQNPVEVHSMIQKYYKSEIKNE
RPHKTYGIEEFLENRKNMIETEISKVDKHISSIKYPTWDPSMIIMEEDQL
RAFCAHVDAKIEACDRGIKLLKDQPQGFVSNMAQENAVATTSHPTQANYL
QNISQSETLLDDFLKQLNDKSYGMVDFSSPVDVPLNSTNELSDLEFEELM
MELSSWDWPYQACDDLVGCNNKVDESVLPSICVEYQGGGDLHALPPSLDV
SDDYCNMFFLNV*
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mRNA from alignment at Chr04:8481737..8483114-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Phvul.004G060500.1_Pv_G19833_v2.1 ID=Phvul.004G060500.1_Pv_G19833_v2.1; Name=Phvul.004G060500.1; organism=Phaseolus vulgaris; type=mRNA; length=1378bp; location=Sequence derived from: Chr04:8481737..8483114- (Phaseolus vulgaris
ATGTCAGATTCAGAGGAAAGTTTAGAAAGGAAGACTTGGATTCAAAAACA
AGGTATGACACTGGACTATGAGATGCCACCCTGTTATGCTATTTGGAGTC
GGTGAAAGGGGGAAGTGAGTAGATAATATTCAATAAGGTAGGAGAAGTTT
TGTTTTCGGTGGCTTCTGCAACATAGATATTCTTAAAAACTGCAGATTGG
GCTTTTTGTGACAGCACATGCTGTTTTCTATCCAGGTGTAGGTATCTCTG
TTTTTCTAGGATACATGCGATGCTTCATGCTGATGTTTTTCTAGCTAAAC
TTTGTATTGTTTTTTCTATTGCTTTATTTTATGCATTGTATCTTAGATGA
CTTTCTTTGTATAAGGGTTGGGACACCCCTGAAGTGTCCCTTTTATTACA
TTAATTTGTTGCTGATAAAAAAAAAATTAAGTTGAATTTCTTTGTTTATT
GTTTCTTCTTGAATTTTTTTTGCCATATTTTGTTTTCTTAGAAAATGGGT
CGTGCAAAATAACCTTAAAACACATCTCAAATGAAAAATTTCGCAAGACA
ACTTTCTTGCGAAGAAAGAGAGGGCTAATGAAGAAGATCTCTGAATTTTC
CAAGAAGTGTGGTGGTGAACACTGTTTGATTGTGTTTGATGATGATAATG
GGGATGTTGGGCCAATGACTTCACCCCAAAACCCTGTAGAGGTACACTCC
ATGATTCAAAAGTATTATAAAAGTGAAATAAAGAATGAGAGACCTCACAA
GACTTATGGTATTGAAGAGTTTCTTGAGAATAGGAAAAACATGATTGAGA
CTGAGATTTCCAAAGTGGATAAACATATTAGCAGCATCAAGTATCCAACT
TGGGATCCAAGTATGATAATCATGGAAGAGGATCAATTGAGGGCCTTTTG
TGCTCATGTGGATGCCAAAATTGAAGCTTGTGATCGGGGAATTAAATTGT
TGAAGGATCAACCTCAAGGTTTTGTGTCAAACATGGCTCAAGAAAATGCT
GTTGCTACCACTTCACATCCAACCCAAGCCAATTACTTGCAAAACATCTC
TCAAAGCGAAACCCTTCTTGATGATTTCTTGAAGCAACTTAATGATAAGA
GTTATGGAATGGTAGATTTTAGTAGTCCAGTTGATGTGCCACTAAATTCA
ACCAATGAACTTAGTGACCTGGAGTTTGAGGAATTGATGATGGAACTTAG
TAGCTGGGATTGGCCTTATCAAGCATGTGATGATCTTGTGGGTTGTAACA
ATAAAGTTGATGAATCTGTCTTGCCAAGTATTTGTGTTGAATATCAAGGA
GGAGGAGATTTGCATGCCTTACCACCATCACTAGATGTATCAGATGATTA
TTGTAACATGTTTTTTCTGAATGTTTAA
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Coding sequence (CDS) from alignment at Chr04:8481737..8483114-

>Phvul.004G060500.1_Pv_G19833_v2.1 ID=Phvul.004G060500.1_Pv_G19833_v2.1; Name=Phvul.004G060500.1; organism=Phaseolus vulgaris; type=CDS; length=939bp; location=Sequence derived from: Chr04:8481737..8483114- (Phaseolus vulgaris
ATGTCAGATTCAGAGGAAAGTTTAGAAAGGAAGACTTGGATTCAAAAACA
AGAAAATGGGTCGTGCAAAATAACCTTAAAACACATCTCAAATGAAAAAT
TTCGCAAGACAACTTTCTTGCGAAGAAAGAGAGGGCTAATGAAGAAGATC
TCTGAATTTTCCAAGAAGTGTGGTGGTGAACACTGTTTGATTGTGTTTGA
TGATGATAATGGGGATGTTGGGCCAATGACTTCACCCCAAAACCCTGTAG
AGGTACACTCCATGATTCAAAAGTATTATAAAAGTGAAATAAAGAATGAG
AGACCTCACAAGACTTATGGTATTGAAGAGTTTCTTGAGAATAGGAAAAA
CATGATTGAGACTGAGATTTCCAAAGTGGATAAACATATTAGCAGCATCA
AGTATCCAACTTGGGATCCAAGTATGATAATCATGGAAGAGGATCAATTG
AGGGCCTTTTGTGCTCATGTGGATGCCAAAATTGAAGCTTGTGATCGGGG
AATTAAATTGTTGAAGGATCAACCTCAAGGTTTTGTGTCAAACATGGCTC
AAGAAAATGCTGTTGCTACCACTTCACATCCAACCCAAGCCAATTACTTG
CAAAACATCTCTCAAAGCGAAACCCTTCTTGATGATTTCTTGAAGCAACT
TAATGATAAGAGTTATGGAATGGTAGATTTTAGTAGTCCAGTTGATGTGC
CACTAAATTCAACCAATGAACTTAGTGACCTGGAGTTTGAGGAATTGATG
ATGGAACTTAGTAGCTGGGATTGGCCTTATCAAGCATGTGATGATCTTGT
GGGTTGTAACAATAAAGTTGATGAATCTGTCTTGCCAAGTATTTGTGTTG
AATATCAAGGAGGAGGAGATTTGCATGCCTTACCACCATCACTAGATGTA
TCAGATGATTATTGTAACATGTTTTTTCTGAATGTTTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR002100TF_MADSbox
IPR036879TF_MADSbox_sf
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
GO:0003677DNA binding