Phvul.004G107600.2
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Phvul.004G107600.2 vs. DB:Swiss
Match: RVE6_ARATH (Protein REVEILLE 6 OS=Arabidopsis thaliana OX=3702 GN=RVE6 PE=2 SV=1) HSP 1 Score: 305.064 bits (780), Expect = 6.746e-102 Identity = 191/323 (59.13%), Postives = 227/323 (70.28%), Query Frame = 1
Query: 1 MVSKNPNPPEGFYLDPTGMALPGMPPFXXX---------------XXXXXXXXXXXXXXXXXKKIRKPYTITKSRENWTEPEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKSGASEHLXXXXXXXXXXXXXXQKASKNAPVLPQVSGSFQSSSALLEPGYILKNDSPAMLKI-PMNTVVSSWSNNTLQTVNLSPVTKVN-NPCSSGESTPKVRPSGESNGQGPLLGNKIHPLRVLPDFTQVYGFIGSVFDPNATEHLQKLKKMDRIDVETVLLLMRNLSINLTSPDFEDHRKLLSSYEVEPERNNYQCG 918
MVS+N +G++LDPTGM +PG+ P + + A S+S ED +KKIRKPYTITKSRE+WTEPEHDKFLEALQLFDRDWKKIEAF+GSKTVIQIRSHAQKYFLKVQKSG EHLPPPRPKRKAAHPYPQKA KN + QV GSF+S+S +P ++ + +S +ML P + W+NN QT++ +P+ K ++ S+ + P SN GN H LRVLPDF QVYGFIGSVFDP A+ HLQKLKKMD IDVETVLLLMRNLSINL+SPDFEDHR+LLSSY++ E G
Sbjct: 1 MVSRNS---DGYFLDPTGMTVPGLGPSFTAAVSSSSSPTTSSTAVAVADVTAMVSSSEEDLSKKIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKSGTGEHLPPPRPKRKAAHPYPQKAHKNVQL--QVPGSFKSTSEPNDPSFMFRPESSSMLMTSPTTAAAAPWTNNA-QTISFTPLPKAGAGANNNCSSSSENTPRPRSNRDARDHGNVGHSLRVLPDFAQVYGFIGSVFDPYASNHLQKLKKMDPIDVETVLLLMRNLSINLSSPDFEDHRRLLSSYDIGSETATDHGG 317
BLAST of Phvul.004G107600.2 vs. DB:Swiss
Match: RVE5_ARATH (Protein REVEILLE 5 OS=Arabidopsis thaliana OX=3702 GN=RVE5 PE=2 SV=1) HSP 1 Score: 245.743 bits (626), Expect = 3.965e-79 Identity = 169/314 (53.82%), Postives = 209/314 (66.56%), Query Frame = 1
Query: 1 MVSKNPNPPEGF-YLDPTGMALPGMPPFXXXXXXXXXXXXXXXXXXXXKKIRKPYTITKSRENWTEPEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKSGASEHLXXXXXXXXXXXXXXQKASKNAPVLPQVSGSFQSSSA--LLEPGYILKNDSPAML--KIPMNTVVSSWSNNTLQTVNL-SPVTKVNNPCSSG-----------ESTPKVRPSGESNGQGPLLGNKIHPLRVLPDFTQVYGFIGSVFDPNATEHLQKLKKMDRIDVETVLLLMRNLSINLTSPDFEDHRKLLSSYEVE 891
MVS NP P +GF D + M+LP F S+ A + S S + K IRKPYTI KSRENWT+ EHDKFLEAL LFDRDWKKIEAFVGSKTV+QIRSHAQKYFLKVQKSGA+EHLPPPRPKRKA+HPYP KA KN S SSS LLEPGY+ +DS +++ + + SSW++ ++ NL PV +V P S E T +VR + N + P RV+P+F +VY FIGSVFDPN + HLQ+LK+MD I++ETVLLLM+NLS+NLTSP+F + R+L+SSY +
Sbjct: 1 MVSVNPRP-KGFPVFDSSNMSLPSSDGFGSIPATGRTSTVSFSEDPTTK-IRKPYTIKKSRENWTDQEHDKFLEALHLFDRDWKKIEAFVGSKTVVQIRSHAQKYFLKVQKSGANEHLPPPRPKRKASHPYPIKAPKNV-----AYTSLPSSSTLPLLEPGYLYSSDSKSLMGNQAVCASTSSSWNH---ESTNLPKPVIEVEEPGVSATAPLPNNRCRQEDTERVRAVTKPNNEESCE----KPHRVMPNFAEVYSFIGSVFDPNTSGHLQRLKQMDPINMETVLLLMQNLSVNLTSPEFAEQRRLISSYSAK 300
BLAST of Phvul.004G107600.2 vs. DB:Swiss
Match: RVE3_ARATH (Protein REVEILLE 3 OS=Arabidopsis thaliana OX=3702 GN=RVE3 PE=2 SV=1) HSP 1 Score: 226.483 bits (576), Expect = 8.132e-72 Identity = 144/257 (56.03%), Postives = 175/257 (68.09%), Query Frame = 1
Query: 142 KKIRKPYTITKSRENWTEPEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKSGASEHLXXXXXXXXXXXXXXQKASKNAPVLPQVSGSFQSSSALLEPGYILKNDSPAMLKIPMNTVVSSWSNNTLQTVNLSPVTKV--------NNPCSSGESTPKVRPS--GESNGQGPLLGNKIHPLRVLPDFTQVYGFIGSVFDPNATEHLQKLKKMDRIDVETVLLLMRNLSINLTSPDFEDHRKLLSSY 882
KK+RKPYTITKSRENWTE EHDKFLEAL LFDRDWKKI+AFVGSKTVIQIRSHAQKYFLKVQK+G EHLPPPRPKRKA HPYPQKA K + SS+AL + Y+ +S + V+S+ + L ++S + V N CS+ S K R E+N Q P RV P+F +VY FIGSVFDP T H+++LK+MD I++ETVLLLM+NLS+NLTSP+F++ RKL+SSY
Sbjct: 49 KKVRKPYTITKSRENWTEQEHDKFLEALHLFDRDWKKIKAFVGSKTVIQIRSHAQKYFLKVQKNGTKEHLPPPRPKRKANHPYPQKAPK---------FTLSSSNALFQHDYLYNTNS--------HPVISTTRKHGLVHCDVSIPSSVIKEEFGVSENCCSTSSSRDKQRTRIVTETNDQESCGK----PHRVAPNFAEVYNFIGSVFDPKTTGHVKRLKEMDPINLETVLLLMKNLSVNLTSPEFDEQRKLISSY 284
BLAST of Phvul.004G107600.2 vs. DB:Swiss
Match: RVE8_ARATH (Protein REVEILLE 8 OS=Arabidopsis thaliana OX=3702 GN=RVE8 PE=2 SV=1) HSP 1 Score: 224.942 bits (572), Expect = 5.658e-71 Identity = 147/257 (57.20%), Postives = 177/257 (68.87%), Query Frame = 1
Query: 142 KKIRKPYTITKSRENWTEPEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKSGASEHLXXXXXXXXXXXXXXQKASKNAPVLPQVSGSFQSSSALLEPGYILKNDSPAMLKIPMNTVVSSWSN-NTLQTVNLSPVTK----VNNPCSSGESTPKVRPSG----ESNGQGPLLGNKIHPLRVLPDFTQVYGFIGSVFDPNATEHLQKLKKMDRIDVETVLLLMRNLSINLTSPDFEDHRKLLSSYE 885
KK+RKPYTITKSRE+WTE EHDKFLEALQLFDRDWKKIE FVGSKTVIQIRSHAQKYFLKVQK+G H+PPPRPKRKAAHPYPQKASKNA + QVS SF ++ PGY +D+ +L N V+S TL+ +K V++P +SG + SG Q P+L +PDF +VY FIGSVFDP H++KLK+MD I+ ETVLLLMRNL++NL++PD E RK+L SY+
Sbjct: 31 KKVRKPYTITKSRESWTEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTLAHVPPPRPKRKAAHPYPQKASKNAQMPLQVSTSFTTTRNGDMPGYASWDDASMLL----NRVISPQHELATLRGAEADIGSKGLLNVSSPSTSGMGSSSRTVSGSEIVRKAKQPPVLHG-------VPDFAEVYNFIGSVFDPETRGHVEKLKEMDPINFETVLLLMRNLTVNLSNPDLESTRKVLLSYD 276
BLAST of Phvul.004G107600.2 vs. DB:Swiss
Match: RVE4_ARATH (Protein REVEILLE 4 OS=Arabidopsis thaliana OX=3702 GN=RVE4 PE=1 SV=1) HSP 1 Score: 216.468 bits (550), Expect = 1.014e-67 Identity = 142/254 (55.91%), Postives = 178/254 (70.08%), Query Frame = 1
Query: 142 KKIRKPYTITKSRENWTEPEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKSGASEHLXXXXXXXXXXXXXXQKASKNAPVLPQVSGSFQSSSALLEPGYI-LKNDSPAMLKIPMNTVVSSWSNNTLQTVNLSPVTKVNNPCSSGESTPKVRPSGE-----SNGQGPLLGNKIHPLRVLPDFTQVYGFIGSVFDPNATEHLQKLKKMDRIDVETVLLLMRNLSINLTSPDFEDHRKLLSSYE 885
KK+RK YTITKSRE+WTE EHDKFLEALQLFDRDWKKIE FVGSKTVIQIRSHAQKYFLKVQK+G H+PPPRPKRKAAHPYPQKASKNA + VS SF + L PGY +D+ A+L I ++ V+ + L T+ + V +N S E++P G S+ +G L + + LPDF +VY FIGSVFDP++ ++KLK+MD I+ ETVLLLMRNL++NL++PDFE + + + E
Sbjct: 36 KKVRKAYTITKSRESWTEGEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTLAHVPPPRPKRKAAHPYPQKASKNAQMSLHVSMSFPTQINNL-PGYTPWDDDTSALLNIAVSGVIP--PEDELDTLCGAEVDVGSNDMIS-ETSPSASGIGSSSRTLSDSKGLRLAKQAPSMHGLPDFAEVYNFIGSVFDPDSKGRMKKLKEMDPINFETVLLLMRNLTVNLSNPDFEPTSEYVDAAE 285
BLAST of Phvul.004G107600.2 vs. DB:Swiss
Match: MYBG_DICDI (Myb-like protein G OS=Dictyostelium discoideum OX=44689 GN=mybG PE=3 SV=1) HSP 1 Score: 146.747 bits (369), Expect = 1.291e-39 Identity = 108/251 (43.03%), Postives = 145/251 (57.77%), Query Frame = 1
Query: 145 KIRKPYTITKSRENWTEPEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKSGASEHLXXXXXXXXXXXXXXQKASKN---APVLPQVSGS-FQSSSAL---LEPGYILKNDSPAMLKIPMNTVVSSWSNNTLQTVNLSPVTKVNNPCSSGESTPKVRPSGESNGQGPLLGNKIHPLRVLPDFTQVYGFIGSVFDPNATEHLQKLKKMDRIDVETVLLLMRNLSINLTSPDFEDHRKLLS 876
K RKPYTI+K RENWT+ EH KFLEAL LFDRDWKKIE+FVGSKTVIQIRSHAQKYF+KVQK+ E +PPPRPKRK+ PYPQK + A + +SG+ F SSS+ + ++ N S + + P + Q VT S + + P+ SN G L P+F ++Y F+ ++F+ N T + L + ID ET+ +LM NL+INL + + D+ + LS
Sbjct: 30 KSRKPYTISKQRENWTDEEHQKFLEALTLFDRDWKKIESFVGSKTVIQIRSHAQKYFIKVQKNNTGERIPPPRPKRKSIQPYPQKQKHDGMGAFIPDSLSGNHFISSSSFATWMTYRGLMPNISESQIN-PSDLQKQLEQLQQAQQYIQQAVTT----AQSSQRNGGLPPNPSSNNGGTTL---------TPNFPKIYAFLSNLFESNGTSFTEALSDLSMIDRETMQILMHNLAINLANQQYRDNHQTLS 266
BLAST of Phvul.004G107600.2 vs. DB:Swiss
Match: RVE2_ARATH (Protein REVEILLE 2 OS=Arabidopsis thaliana OX=3702 GN=RVE2 PE=1 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 5.940e-23 Identity = 41/62 (66.13%), Postives = 51/62 (82.26%), Query Frame = 1
Query: 145 KIRKPYTITKSRENWTEPEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQK 330
K RKPYTITK RE WTE EH+KF+EAL+L+ R W++IE VG+KT +QIRSHAQK+F KV +
Sbjct: 25 KTRKPYTITKQREKWTEAEHEKFVEALKLYGRAWRRIEEHVGTKTAVQIRSHAQKFFTKVAR 86
BLAST of Phvul.004G107600.2 vs. DB:Swiss
Match: RVE1_ARATH (Protein REVEILLE 1 OS=Arabidopsis thaliana OX=3702 GN=RVE1 PE=2 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 3.489e-22 Identity = 41/62 (66.13%), Postives = 51/62 (82.26%), Query Frame = 1
Query: 145 KIRKPYTITKSRENWTEPEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQK 330
K+RKPYTITK RE WT+ EH KF+EAL+L+ R W++IE VGSKT +QIRSHAQK+F KV +
Sbjct: 44 KVRKPYTITKERERWTDEEHKKFVEALKLYGRAWRRIEEHVGSKTAVQIRSHAQKFFSKVAR 105
BLAST of Phvul.004G107600.2 vs. DB:Swiss
Match: LHY_ARATH (Protein LHY OS=Arabidopsis thaliana OX=3702 GN=LHY PE=1 SV=2) HSP 1 Score: 98.9821 bits (245), Expect = 8.894e-22 Identity = 40/64 (62.50%), Postives = 52/64 (81.25%), Query Frame = 1
Query: 145 KIRKPYTITKSRENWTEPEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKSG 336
K RKPYTITK RE WTE EH++FLEAL+L+ R W++IE +G+KT +QIRSHAQK+F K++K
Sbjct: 13 KARKPYTITKQRERWTEDEHERFLEALRLYGRAWQRIEEHIGTKTAVQIRSHAQKFFTKLEKEA 76
BLAST of Phvul.004G107600.2 vs. DB:Swiss
Match: CCA1_ARATH (Protein CCA1 OS=Arabidopsis thaliana OX=3702 GN=CCA1 PE=1 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 1.585e-21 Identity = 41/62 (66.13%), Postives = 51/62 (82.26%), Query Frame = 1
Query: 145 KIRKPYTITKSRENWTEPEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQK 330
K RKPYTITK RE WTE EH++F+EAL+L+ R W+KIE V +KT +QIRSHAQK+F KV+K
Sbjct: 13 KTRKPYTITKQRERWTEEEHNRFIEALRLYGRAWQKIEEHVATKTAVQIRSHAQKFFSKVEK 74 The following BLAST results are available for this feature:
BLAST of Phvul.004G107600.2 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
Sequences
The
following sequences are available for this feature:
protein sequence of Phvul.004G107600.2_Pv_G19833_v2.1 >Phvul.004G107600.2_Pv_G19833_v2.1 ID=Phvul.004G107600.2_Pv_G19833_v2.1; Name=Phvul.004G107600.2_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=307bpback to top mRNA from alignment at Chr04:37545202..37554900+ Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Phvul.004G107600.2_Pv_G19833_v2.1 ID=Phvul.004G107600.2_Pv_G19833_v2.1; Name=Phvul.004G107600.2; organism=Phaseolus vulgaris; type=mRNA; length=9699bp; location=Sequence derived from: Chr04:37545202..37554900+ (Phaseolus vulgarisback to top Coding sequence (CDS) from alignment at Chr04:37545202..37554900+ >Phvul.004G107600.2_Pv_G19833_v2.1 ID=Phvul.004G107600.2_Pv_G19833_v2.1; Name=Phvul.004G107600.2; organism=Phaseolus vulgaris; type=CDS; length=921bp; location=Sequence derived from: Chr04:37545202..37554900+ (Phaseolus vulgarisback to top |