Phvul.004G122750.1

Transcript Overview
NamePhvul.004G122750.1
Unique NamePhvul.004G122750.1_Pv_G19833_v2.1
TypemRNA
OrganismPhaseolus vulgaris (Common bean)
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr04supercontigChr04:41501666..41502219 +Phaseolus vulgaris G19833 genome v2.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Phaseolus vulgaris G19833 genome v2.12019-09-17
InterProScan: Phaseolus vulgaris G19833 genome v2.12019-10-18
BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot2019-10-18
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
pvpvL192Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvpvR235Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pspvL041Pisum sativum Cameor genome v1aPisum sativum
pspvL626Pisum sativum Cameor genome v1aPisum sativum
pvvuR412Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pvvuR417Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pvvuR460Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caipvL0422Cicer arietinum ICC 4958 genome v2Cicer arietinum
capvL099Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
crpvL385Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
capvL351Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
crpvL875Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
capvL666Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
capvL738Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccpvL0724Cajanus cajan Asha genome v1.0Cajanus cajan
ccpvL1211Cajanus cajan Asha genome v1.0Cajanus cajan
anpvL0329Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0943Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL1219Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL1292Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
aspvL075Vigna angularis Jingnong 6 genome v1.1Vigna angularis
aspvL296Vigna angularis Jingnong 6 genome v1.1Vigna angularis
aspvL432Vigna angularis Jingnong 6 genome v1.1Vigna angularis
pvzwsR389Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvzwsR427Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvvfhR437Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvvfhR454Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvvfhR460Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvtifR435Vicia faba cv. Tiffany genome v1.0Vicia faba
pvtifR449Vicia faba cv. Tiffany genome v1.0Vicia faba
pvtifR456Vicia faba cv. Tiffany genome v1.0Vicia faba
pvvrvR402Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvrvR433Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvrvR434Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvuaR362Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvuaR365Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvuaR370Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvuaR401Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvssR494Vicia sativa cv. Studenica genome v1.0Vicia sativa
pvvssR497Vicia sativa cv. Studenica genome v1.0Vicia sativa
canpvL320Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjpvL027Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjpvL310Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjpvL395Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjpvL750Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carpvL329Cicer arietinum
carpvL721Cicer arietinum
carpvL723Cicer arietinum
carpvL788Cicer arietinum
ccapvL056Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapvL213Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapvL281Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapvL620Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapvL768Cajanus cajan cv. Asha genome v2.0Cajanus cajan
pvvumR468Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvumR472Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvumR478Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvumR482Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvvaR458Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvvaR463Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvvaR513Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvasR476Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvasR480Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvasR481Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvasR515Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvasR521Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvstR472Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvvstR476Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvvstR517Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvvstR523Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvpvfR387Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR389Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR414Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvvunR380Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
pvvunR382Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
pvvunR422Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
evm.model.Chr04.1522Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vum_08G00608.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Cc_v2.0_04763.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
rna-XM_014651968.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vum_09G00846.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Ca_16412Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Vigst.08G059600.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Vfaba.Tiffany.R1.4g025440.1Vicia faba cv. Tiffany genome v1.0Vicia faba
XM_058918925.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Vigun07g230200.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Ca_04507Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Vigun04g162700.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
LR48_mrnaVigan02g216000Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vigan.11G194000.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Vfaba.Tiffany.R1.3g111240.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Va10G010090.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
jg41051.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vigun04g162700.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Cc_v2.0_02167.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Psat6g201520.1Pisum sativum Cameor genome v1aPisum sativum
rna-KK1_007616Cajanus cajan Asha genome v1.0Cajanus cajan
Psat06G0546000-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Vfaba.Hedin2.R1.3g138400.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Vigst.11G097700.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Cc_v2.0_17992.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Vigan.09G142200.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Ca_10401.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Vigst.09G078900.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
XM_058891083.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Vigun07g230200.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vigan.08G074900.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
evm.model.Chr07.582Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
LR48_mrnaVigan10g082600Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vfaba.Hedin2.R1.4g033280.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
rna-TanjilR_07366Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-XM_014657603.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
PvulFLAVERTChr07.410Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Phvul.007G066300.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
PvulFLAVERTChr04.747Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Phvul.004G122750Phvul.004G122750_Pv_G19833_v2.1Phaseolus vulgarisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Phvul.004G122750.1Phvul.004G122750.1_Pv_G19833_v2.1-proteinPhaseolus vulgarispolypeptide
Phvul.004G122750.1_Pv_G19833_v2.1Phvul.004G122750.1_Pv_G19833_v2.1Phaseolus vulgarispolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.004G122750.1.v2.1.five_prime_UTR.1Phvul.004G122750.1.v2.1.five_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgarisfive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.004G122750.1.v2.1.CDS.1Phvul.004G122750.1.v2.1.CDS.1_Pv_G19833_v2.1Phaseolus vulgarisCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.004G122750.1.v2.1.three_prime_UTR.1Phvul.004G122750.1.v2.1.three_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgaristhree_prime_UTR


Homology
The following BLAST results are available for this feature:
BLAST of Phvul.004G122750.1 vs.
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018392LysM domainPFAMPF01476LysMcoord: 61..102
e-value: 2.3E-4
score: 21.1
IPR018392LysM domainCDDcd00118LysMcoord: 60..102
e-value: 3.19964E-5
score: 36.3093
IPR036779LysM domain superfamilyGENE3D3.10.350.10coord: 50..109
e-value: 2.9E-5
score: 25.5

Sequences
The following sequences are available for this feature:

protein sequence of Phvul.004G122750.1_Pv_G19833_v2.1

>Phvul.004G122750.1_Pv_G19833_v2.1 ID=Phvul.004G122750.1_Pv_G19833_v2.1; Name=Phvul.004G122750.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=113bp
MFMGSSTKNLADSASWCCALALLCLILLGSIRENHVSVEEEDGTAVRGRS
NLFERPCDEIYVVGEGETLHTISDKCGDPFIVESNPHIHDPDDVFPGLVI
KITPTYKKLLKR*
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mRNA from alignment at Chr04:41501666..41502219+

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Phvul.004G122750.1_Pv_G19833_v2.1 ID=Phvul.004G122750.1_Pv_G19833_v2.1; Name=Phvul.004G122750.1; organism=Phaseolus vulgaris; type=mRNA; length=554bp; location=Sequence derived from: Chr04:41501666..41502219+ (Phaseolus vulgaris
TTTCTTTTTCTCAATTCTCATATACAGCATAACCACATATAGATACACAT GTTCATGGGTTCCTCAACAAAGAACCTAGCTGATTCAGCATCATGGTGTT GTGCCTTGGCACTTTTGTGTCTAATTCTATTGGGGTCCATAAGGGAGAAC CATGTTTCGGTGGAGGAGGAGGATGGCACGGCGGTGAGAGGGCGGAGCAA CCTATTCGAACGGCCGTGTGATGAGATATATGTGGTGGGAGAAGGGGAGA CCCTACACACCATAAGTGACAAGTGTGGTGACCCTTTTATTGTTGAAAGC AACCCTCATATTCATGACCCTGATGATGTTTTCCCTGGCCTTGTCATCAA AATCACCCCCACATATAAGAAATTGCTCAAGAGGTAGACCTTCTATAGTA TAGTTTAGTTCCTTTCACTTTTCTTTTCTTGTGTTTTTCATTATGTATAT TGTACAGTATATGATACAGGAGGGAAACATATCAAGTTTTTTTTTACAAT TTAATAGAAGTTTGAAAGTACCAGAGATGAGCAAAGGATGAAAAAAATAT ATAT
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Coding sequence (CDS) from alignment at Chr04:41501666..41502219+

>Phvul.004G122750.1_Pv_G19833_v2.1 ID=Phvul.004G122750.1_Pv_G19833_v2.1; Name=Phvul.004G122750.1; organism=Phaseolus vulgaris; type=CDS; length=339bp; location=Sequence derived from: Chr04:41501666..41502219+ (Phaseolus vulgaris
ATGTTCATGGGTTCCTCAACAAAGAACCTAGCTGATTCAGCATCATGGTG
TTGTGCCTTGGCACTTTTGTGTCTAATTCTATTGGGGTCCATAAGGGAGA
ACCATGTTTCGGTGGAGGAGGAGGATGGCACGGCGGTGAGAGGGCGGAGC
AACCTATTCGAACGGCCGTGTGATGAGATATATGTGGTGGGAGAAGGGGA
GACCCTACACACCATAAGTGACAAGTGTGGTGACCCTTTTATTGTTGAAA
GCAACCCTCATATTCATGACCCTGATGATGTTTTCCCTGGCCTTGTCATC
AAAATCACCCCCACATATAAGAAATTGCTCAAGAGGTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR018392LysM_dom
IPR036779LysM_dom_sf