Phvul.004G169200.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Phvul.004G169200.1 vs. DB:Swiss
Match: ATL42_ARATH (E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana OX=3702 GN=ATL42 PE=1 SV=2) HSP 1 Score: 310.071 bits (793), Expect = 1.145e-100 Identity = 203/439 (46.24%), Postives = 270/439 (61.50%), Query Frame = 1 Query: 16 VILFVLSILFLQVRAQSTAP--SGDAVSNFQPSLAVVIGILGVMFLLTFFLLMYAKFCQHRGSSASLGNQENLPT------FVRSRS---RFSGIDKTVIESLPFFRFSSLKGSKEGLECAVCLSKFEDVEVLRLLPKCKHAFHIDCIDHWLERHSSCPICRHKVN-PEDHTTFTYSNSLRRLANQSGLGEESNLDIFVQREEEXXXXXXXXXXXXX--------XKMGKGVKEEELLIQKGAEDSDGNQKGYHKHNHMITISDVVFKHRWSNVSSSDLMFLNSEMLNATSSNRFSNFESNADLMSTPREVVENEQIK--NIKEEMERKISFESKVSALNNIKSVSEKDPPFTSDSAGNSSHAPKYVNPGEKRSISEITGVSRF-----GDLGMKMRVFKDSSSVQN--NLKEERMRQIWFPIAKRTAQWFVNRETRSQ 1245 + F L +L AQ+ P +GD V+NF+PSLAVV G+L +MF LTF LL+YAK C S S + + F RS + RFSG+DKT IESLP FRFS+LKGSK+GL+C+VCLSKFE VE+LRLLPKC+HAFHI CID WLE+H++CP+CR +V+ ED + T NS R L NQS + E+S+L+++++REEE R + S RK+ K +E+ L+ + D D +K HK NH I +SDVVFK+RWSNVSSSDLMFLNSEM+N+ SS RFS+ + + E +QI IKEEME K E+K++++ + S D S S + PG +RS+S+IT V R GD + +S++QN N EER R++W PIA++TAQWF NRE RSQ Sbjct: 4 IFFFFLPLLHSYASAQTPPPFRNGDLVANFEPSLAVVTGVLAIMFALTFVLLVYAKCCHIDLRSGSGDRRRHDRRLRQGIFFNRSTASSDRFSGLDKTAIESLPLFRFSALKGSKQGLDCSVCLSKFESVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCRDRVSMEEDSSVLTNGNSFRFL-NQSEIREDSSLELYIEREEEEERIHREELSGSSRFSIGESFRKILKLGNKEKTLLDEHVNDKD-EKKLMHKFNHRIVVSDVVFKNRWSNVSSSDLMFLNSEMVNSISSERFSSLDH-------VKRGDEEDQIGILRIKEEMEAKRMLENKLTSMTTMFSSENGDSGSKSRSV--------MIEPG-RRSVSDITAVPRLSISIHGDCSGS--AAETASALQNGGNETEERRRRLWLPIARKTAQWFANREKRSQ 422
BLAST of Phvul.004G169200.1 vs. DB:Swiss
Match: ATL12_ARATH (Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana OX=3702 GN=ATL12 PE=3 SV=1) HSP 1 Score: 283.108 bits (723), Expect = 8.534e-91 Identity = 183/410 (44.63%), Postives = 240/410 (58.54%), Query Frame = 1 Query: 52 VRAQSTAPSGDAVSN--FQPSLAVVIGILGVMFLLTFFLLMYAKFCQH---RGSSASLGNQ---ENL--PTFVRSRSRFSGIDKTVIESLPFFRFSSLKGSKEGLECAVCLSKFEDVEVLRLLPKCKHAFHIDCIDHWLERHSSCPICRHKVNPEDHTTF--TYSNSLRRLANQSGLGEESNLDIFVQREEEXXXXXXXXXXXXXXKMGKGVKEEELLIQKGAEDSDGNQKGYHKHNHMITISDVVFKHRWSNVSSSDLMFLNSEMLNATSSNRFSNFESNADLMSTPREVVENEQIKNIKEEMERKISFESKVSALNNIKSVSEKDPPFTSDSAGNSSHAPKYVNPGEKRSISEITGVSRFGDLGMKMRVFKDSSSVQN----NLKEERMRQIWFPIAKRTAQWFVNRE 1233 V AQS P ++ F+PSLA++ G+ ++F LTF LL+YAK C H R + S G + + L F RS SRFSG+DK IESLPFFRFS+LKG K+GLEC+VCLSKFEDVE+LRLLPKC+HAFHI CID WLE+H++CP+CR++VN ED + S SLR L E+S L+I+++REE S F K +K+ LL ++G E+ D +K HK NH I +SD VFK+RWSN++SSDL FL SEMLN+ SS+RFS+ + V +++ KE+ME K + KD +R++SEIT VSR +G R S+S QN EER R++W PIA+RTAQWFVNRE Sbjct: 20 VSAQSPPPPNLYATSDLFKPSLAIITGVFSIVFTLTFVLLVYAK-CFHNDLRSETDSDGERIRHDRLWQGLFNRS-SRFSGLDKKAIESLPFFRFSALKGLKQGLECSVCLSKFEDVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCRNRVNIEDDLSVLGNSSTSLRILNQSETREEDSRLEIYIEREE-----GTNDGSSRFSSFRKILKKSLLLEREGNENID-EKKLMHKFNHRIVVSDAVFKNRWSNITSSDLTFLTSEMLNSVSSDRFSSVDR-----------VHRGNLRD-KEDMEMKRML------------IKHKD--------------------SSRRTVSEITTVSREKAVGGSYRGSTASTS-QNYAVTATTEERRRRLWLPIARRTAQWFVNRE 376
BLAST of Phvul.004G169200.1 vs. DB:Swiss
Match: ATL43_ARATH (RING-H2 finger protein ATL43 OS=Arabidopsis thaliana OX=3702 GN=ATL43 PE=2 SV=2) HSP 1 Score: 146.747 bits (369), Expect = 1.898e-38 Identity = 73/145 (50.34%), Postives = 97/145 (66.90%), Query Frame = 1 Query: 88 VSNFQPSLAVVIGILGVMFLLTFFLLMYAKFCQHRGSSASLGNQENLP-----------TFVRSRSRFSGIDKTVIESLPFFRFSSLKGSKEGLECAVCLSKFEDVEVLRLLPKCKHAFHIDCIDHWLERHSSCPICRHKVNPED 489 S+ P +AVVI +L F LTF LL+Y K C+ R S + + + V + SGID++VIESLP FRF +L G K+GLECAVCL++FE EVLRLLPKCKHAFH++C+D WL+ HS+CP+CR++V+PED Sbjct: 51 TSSLMPGIAVVIAVLTAFFSLTFLLLLYVKHCKRRNGSVYVNHPQRFAITRYGGGYYNGGGVVGGRKNSGIDRSVIESLPVFRFGALSGHKDGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPED 195
BLAST of Phvul.004G169200.1 vs. DB:Swiss
Match: ATL32_ARATH (RING-H2 finger protein ATL32 OS=Arabidopsis thaliana OX=3702 GN=ATL32 PE=2 SV=3) HSP 1 Score: 123.635 bits (309), Expect = 9.710e-31 Identity = 67/160 (41.88%), Postives = 91/160 (56.88%), Query Frame = 1 Query: 16 VILFVLSILFLQVRAQSTAPSG-DAVSNFQPSLAVVIGILGVMFLLTFFLLMYAKFCQHRGSSASLGNQENLPTFVRSR-----SRFSGIDKTVIESLPFFRFSSLKGSKEG---LECAVCLSKFEDVEVLRLLPKCKHAFHIDCIDHWLERHSSCPICR 468 +IL V I+ + AQS +PS D + PS V +L +F LT L +Y + C N ++ + R+R SR G+D V+ES P F +SS+K SK G LECA+CL++ ED E +RLLP C H FHIDCID WL H++CP+CR Sbjct: 14 IILHVAIIIQSKANAQSFSPSPPDLQTGHTPSKTTVFAVLVTLFFLTGLLSVYIRHCAR-------SNPDSSTRYFRNRANDGSSRRGGLDNAVVESFPVFAYSSVKESKIGSKDLECAICLNELEDHETVRLLPICNHLFHIDCIDTWLYSHATCPVCR 166
BLAST of Phvul.004G169200.1 vs. DB:Swiss
Match: ATL11_ARATH (RING-H2 finger protein ATL11 OS=Arabidopsis thaliana OX=3702 GN=ATL11 PE=2 SV=2) HSP 1 Score: 119.013 bits (297), Expect = 1.941e-28 Identity = 56/140 (40.00%), Postives = 87/140 (62.14%), Query Frame = 1 Query: 76 SGDAVSNFQPSLAVVIGILGVMFLLTFFLLMYAKFCQHRGSSASLGNQENLPTFVRS-RSRFSGIDKTVIESLPFFRFSSLKG---SKEGLECAVCLSKFEDVEVLRLLPKCKHAFHIDCIDHWLERHSSCPICRHKVNP 483 SGD+ S F P++A+++ +L +F F +Y + C R GN + ++ + R + G+D ++IE+ P F++S++K KE LEC+VCL++FED E LRL+PKC H FH CID WL H++CP+CR + P Sbjct: 53 SGDS-SRFDPTMAILMIVLVSVFFFLGFFSVYIRRCLERVMGMDYGNPNDAGNWLATNRQQARGLDASIIETFPTFQYSTVKTLRIGKEALECSVCLNEFEDDETLRLIPKCCHVFHPGCIDAWLRSHTTCPLCRADLIP 191
BLAST of Phvul.004G169200.1 vs. DB:Swiss
Match: ATL34_ARATH (RING-H2 finger protein ATL34 OS=Arabidopsis thaliana OX=3702 GN=ATL34 PE=2 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 3.528e-25 Identity = 70/169 (41.42%), Postives = 91/169 (53.85%), Query Frame = 1 Query: 19 ILFVLSILFLQVRAQ----STAPSGDAVSNFQPSLAVVIGILGVMFLLTFFLLM------YAKFCQHRGSSASLGNQENLPTFVRSRSRFSGIDKTVIESLPFFRFSSLKG---SKEGLECAVCLSKFEDVEVLRLLPKCKHAFHIDCIDHWLERHSSCPICRHKVNPE 486 ++F+L +L LQV Q +TAP A Q AV+I +L MF L F +L Y H SS + F R SR G+ K VI S P F +S +KG K G+ECA+CL++FED E LRL+P C HAFH CID WL S+CP+CR + P+ Sbjct: 14 VIFLL-LLVLQVSGQHQPRTTAPPYIAQRPNQVP-AVIIAML--MFTLLFSMLACCVCYKYTNTSPHGTSSDTEEGGHGEVAFTRRTSR--GLGKDVINSFPSFLYSQVKGLKIGKGGVECAICLNEFEDEETLRLMPPCSHAFHASCIDVWLSSRSTCPVCRASLPPK 176
BLAST of Phvul.004G169200.1 vs. DB:Swiss
Match: ATL52_ARATH (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 6.161e-25 Identity = 59/151 (39.07%), Postives = 91/151 (60.26%), Query Frame = 1 Query: 115 VVIGILGVMFLLTFFLLMYAKFCQHR----GSSASLGNQENLPTFVRSRSRFS----GIDKTVIESLPFFRFSSLKGSKEGLECAVCLSKFEDVEVLRLLPKCKHAFHIDCIDHWLERHSSCPICRHKVNPEDHTTFTYSNSLR-RLANQS 540 +IGIL +L + + +K+C HR SS +L N F S R S G+++++I+S+ +++ S G +G +C+VCLS+FE+ E LRLLPKC HAFH+ CID WL+ HS+CP+CR V ++ T + ++ +ANQS Sbjct: 60 ALIGILTSALILVSYYTLISKYC-HRHHQTSSSETLNLNHNGEGFFSSTQRISTNGDGLNESMIKSITVYKYKSGDGFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRAFVTGVNNPTASVGQNVSVVVANQS 209
BLAST of Phvul.004G169200.1 vs. DB:Swiss
Match: ATL6_ARATH (E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana OX=3702 GN=ATL6 PE=1 SV=2) HSP 1 Score: 108.227 bits (269), Expect = 1.255e-24 Identity = 59/159 (37.11%), Postives = 81/159 (50.94%), Query Frame = 1 Query: 16 VILFVLSILFLQVRAQSTAPSGDAV--SNFQPSLAVVIGILGVMFLLTFFLLMYAKFCQ---HRGSSASLGNQENLPTFVRSRSRFSGIDKTVIESLPFFRFSSLKGSKEG---LECAVCLSKFEDVEVLRLLPKCKHAFHIDCIDHWLERHSSCPICR 468 V L +LS L P+ P++AV++ IL F +Y + C G S + G + +R G+D +V+E+ P F +S +K K G LECA+CL++FED E LRLLPKC H FH CID WLE H +CP+CR Sbjct: 16 VFLLILSSADLAASQSQPGPTNQPYNYGRLSPAMAVIVVILIAALFFMGFFSIYFRHCSGVPDAGVSPAGGARSRATVNAAAR----GLDVSVVETFPTFLYSDVKTQKLGKGELECAICLNEFEDDETLRLLPKCDHVFHPHCIDAWLEAHVTCPVCR 170
BLAST of Phvul.004G169200.1 vs. DB:Swiss
Match: ATL9_ARATH (E3 ubiquitin-protein ligase ATL9 OS=Arabidopsis thaliana OX=3702 GN=ATL9 PE=1 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 6.888e-24 Identity = 56/148 (37.84%), Postives = 84/148 (56.76%), Query Frame = 1 Query: 118 VIGILGVMFLLTFFLLMYAKFCQH------RGSSASLGNQENLPTFVRSRSRFS-GIDKTVIESLPFFRFSSLKG---SKEGLECAVCLSKFEDVEVLRLLPKCKHAFHIDCIDHWLERHSSCPICR-----HKVNPEDHTTFTYSNS 516 V+ ++ V+FL+ FF++ + FC+ R S + + VR R + G+D IE+ P F +S +K K G+ECAVCL +FED E LRL+P C H FH DC+D WL HS+CP+CR ++ +D +T +YS + Sbjct: 51 VVVVITVLFLVIFFMVFGSIFCRRSNAQFSRSSIFRSTDADAESQVVRIRRLTARGLDAEAIETFPTFLYSEVKAVRIGKGGVECAVCLCEFEDDETLRLMPPCCHVFHADCVDVWLSEHSTCPLCRADLVLNQQGDDDDSTESYSGT 198
BLAST of Phvul.004G169200.1 vs. DB:Swiss
Match: ATL15_ARATH (E3 ubiquitin-protein ligase ATL15 OS=Arabidopsis thaliana OX=3702 GN=ATL15 PE=1 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 3.713e-23 Identity = 54/138 (39.13%), Postives = 80/138 (57.97%), Query Frame = 1 Query: 91 SNFQPSLAVVIGILGVMFLLTFFLLMYAKFC-QHR---GSSASLGNQENLPTFVRSRSRFSGIDKTVIESLPFFRFSSLKG---SKEGLECAVCLSKFEDVEVLRLLPKCKHAFHIDCIDHWLERHSSCPICRHKVNP 483 ++F P+ A+++ +L +F + +Y + C QH S GN N VR + G+D +VIE+ P F +S++K KE LEC VCL++FED E LRL+P+C H FH CID WL ++CP+CR + P Sbjct: 33 TSFSPTTAIIMIVLVSVFFALGCISVYMRRCLQHALGMDSGGGPGNWLN----VRQTTE-PGLDASVIETFPTFPYSTVKTLRIGKEALECPVCLNEFEDDETLRLIPQCCHVFHPGCIDAWLRSQTTCPLCRANLVP 165 The following BLAST results are available for this feature:
BLAST of Phvul.004G169200.1 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
Sequences
The
following sequences are available for this feature:
protein sequence of Phvul.004G169200.1_Pv_G19833_v2.1 >Phvul.004G169200.1_Pv_G19833_v2.1 ID=Phvul.004G169200.1_Pv_G19833_v2.1; Name=Phvul.004G169200.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=427bpback to top mRNA from alignment at Chr04:47253324..47254877+ Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Phvul.004G169200.1_Pv_G19833_v2.1 ID=Phvul.004G169200.1_Pv_G19833_v2.1; Name=Phvul.004G169200.1; organism=Phaseolus vulgaris; type=mRNA; length=1554bp; location=Sequence derived from: Chr04:47253324..47254877+ (Phaseolus vulgarisback to top Coding sequence (CDS) from alignment at Chr04:47253324..47254877+ >Phvul.004G169200.1_Pv_G19833_v2.1 ID=Phvul.004G169200.1_Pv_G19833_v2.1; Name=Phvul.004G169200.1; organism=Phaseolus vulgaris; type=CDS; length=1281bp; location=Sequence derived from: Chr04:47253324..47254877+ (Phaseolus vulgarisback to top |