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Transcript Overview
| Name | Phvul.004G170100.2 |
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| Unique Name | Phvul.004G170100.2_Pv_G19833_v2.1 |
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| Type | mRNA |
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| Organism | Phaseolus vulgaris (Common bean) |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Phvul.004G170100.2 | Phvul.004G170100.2_Pv_G19833_v2.1-protein | Phaseolus vulgaris | polypeptide |
| Phvul.004G170100.2_Pv_G19833_v2.1 | Phvul.004G170100.2_Pv_G19833_v2.1 | Phaseolus vulgaris | polypeptide |
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Phvul.004G170100.2.v2.1.five_prime_UTR.1 | Phvul.004G170100.2.v2.1.five_prime_UTR.1_Pv_G19833_v2.1 | Phaseolus vulgaris | five_prime_UTR |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Phvul.004G170100.2.v2.1.CDS.1 | Phvul.004G170100.2.v2.1.CDS.1_Pv_G19833_v2.1 | Phaseolus vulgaris | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Phvul.004G170100.2.v2.1.three_prime_UTR.1 | Phvul.004G170100.2.v2.1.three_prime_UTR.1_Pv_G19833_v2.1 | Phaseolus vulgaris | three_prime_UTR |
Homology
BLAST of Phvul.004G170100.2 vs. DB:Swiss
Match: LFS_ALLCE (Lachrymatory-factor synthase OS=Allium cepa OX=4679 GN=LFS PE=1 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 5.744e-19 Identity = 47/151 (31.13%), Postives = 75/151 (49.67%), Query Frame = 1
Query: 31 KWKGKAIAEVKGVKAEEVWPLLEDFFGLNKWFPT-PLCIPVEGLSGQPGCVRFCAGFKTPVDDETKKTVNWTKQKLLSIDPSQWTFTYSIVEGNVGFHSYIATWKLKPTPE--GTEIQWHYEVEPVEGWKLEYLNTFTDKGLNAMAKKIEE 474
KW GK A + K E+ W LL+DF L+K P+ +C VEG + GCVR+ G P+++E W K+KL+++D +++Y E G+ Y AT ++ PE G+ W ++ + +EG + +KIEE
Sbjct: 20 KWSGKVHALLPNTKPEQAWTLLKDFINLHKVMPSLSVCELVEGEANVVGCVRYVKGIMHPIEEEF-----WAKEKLVALDNKNMSYSYIFTECFTGYEDYTATMQIVEGPEHKGSRFDWSFQCKYIEGMTESAFTEILQHWATEIGQKIEE 165
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR023393 | START-like domain superfamily | GENE3D | 3.30.530.20 | | coord: 4..167
e-value: 4.5E-42
score: 146.1 |
| IPR019587 | Polyketide cyclase/dehydrase | PFAM | PF10604 | Polyketide_cyc2 | coord: 19..165
e-value: 4.5E-19
score: 69.1 |
| None | No IPR available | CDD | cd07821 | PYR_PYL_RCAR_like | coord: 12..157
e-value: 1.09793E-25
score: 93.5427 |
| None | No IPR available | SUPERFAMILY | 55961 | Bet v1-like | coord: 24..158 |
Sequences
The
following sequences are available for this feature:
protein sequence of Phvul.004G170100.2_Pv_G19833_v2.1 >Phvul.004G170100.2_Pv_G19833_v2.1 ID=Phvul.004G170100.2_Pv_G19833_v2.1; Name=Phvul.004G170100.2_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=172bp
MESIEQGREEKWKGKAIAEVKGVKAEEVWPLLEDFFGLNKWFPTPLCIPV
EGLSGQPGCVRFCAGFKTPVDDETKKTVNWTKQKLLSIDPSQWTFTYSIV
EGNVGFHSYIATWKLKPTPEGTEIQWHYEVEPVEGWKLEYLNTFTDKGLN
AMAKKIEEGLKTMETALKFHN* back to topmRNA from alignment at Chr04:47364091..47364735- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Phvul.004G170100.2_Pv_G19833_v2.1 ID=Phvul.004G170100.2_Pv_G19833_v2.1; Name=Phvul.004G170100.2; organism=Phaseolus vulgaris; type=mRNA; length=645bp; location=Sequence derived from: Chr04:47364091..47364735- (Phaseolus vulgaris
CTCTTCTTGTGTGTGGCATTGCAACTACACTAAAAATGGAGTCTATTGAA
CAAGGAAGAGAAGAAAAATGGAAGGGCAAGGCCATAGCAGAAGTAAAAGG
AGTGAAAGCAGAAGAAGTGTGGCCACTTTTGGAGGATTTCTTTGGCCTGA
ACAAGTGGTTTCCCACTCCTTTGTGCATTCCTGTTGAAGGCCTCTCTGGG
CAACCAGGGTGTGTTCGTTTCTGTGCTGGTTTCAAGACACCAGTGGATGA
TGAAACCAAGAAAACTGTGAATTGGACCAAGCAGAAACTCTTGTCCATTG
ACCCTTCTCAATGGACTTTCACCTACTCCATTGTGGAGGGAAATGTAGGG
TTTCACTCCTACATAGCAACTTGGAAACTCAAGCCAACTCCTGAAGGGAC
TGAGATTCAGTGGCACTATGAAGTTGAACCAGTTGAAGGGTGGAAGCTTG
AATATCTCAACACCTTCACAGACAAAGGGTTGAATGCCATGGCTAAGAAG
ATTGAAGAAGGTTTGAAGACCATGGAAACAGCACTCAAGTTCCACAACTA
AGTGACACACTCATACTGTTATGCTTGTACTGCATACTGTTATGCTTGTA
CTGTTTAATTAATGCAGGTTTCACTTTAATATTATTGTCCCTTTT back to topCoding sequence (CDS) from alignment at Chr04:47364091..47364735- >Phvul.004G170100.2_Pv_G19833_v2.1 ID=Phvul.004G170100.2_Pv_G19833_v2.1; Name=Phvul.004G170100.2; organism=Phaseolus vulgaris; type=CDS; length=516bp; location=Sequence derived from: Chr04:47364091..47364735- (Phaseolus vulgaris
ATGGAGTCTATTGAACAAGGAAGAGAAGAAAAATGGAAGGGCAAGGCCAT
AGCAGAAGTAAAAGGAGTGAAAGCAGAAGAAGTGTGGCCACTTTTGGAGG
ATTTCTTTGGCCTGAACAAGTGGTTTCCCACTCCTTTGTGCATTCCTGTT
GAAGGCCTCTCTGGGCAACCAGGGTGTGTTCGTTTCTGTGCTGGTTTCAA
GACACCAGTGGATGATGAAACCAAGAAAACTGTGAATTGGACCAAGCAGA
AACTCTTGTCCATTGACCCTTCTCAATGGACTTTCACCTACTCCATTGTG
GAGGGAAATGTAGGGTTTCACTCCTACATAGCAACTTGGAAACTCAAGCC
AACTCCTGAAGGGACTGAGATTCAGTGGCACTATGAAGTTGAACCAGTTG
AAGGGTGGAAGCTTGAATATCTCAACACCTTCACAGACAAAGGGTTGAAT
GCCATGGCTAAGAAGATTGAAGAAGGTTTGAAGACCATGGAAACAGCACT
CAAGTTCCACAACTAA back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR023393 | START-like_dom_sf |
| IPR019587 | Polyketide_cyclase/dehydratase |
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