Phvul.005G109600.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Phvul.005G109600.1 vs. DB:Swiss
Match: CCD61_ARATH (Putative cyclin-D6-1 OS=Arabidopsis thaliana OX=3702 GN=CYCD6-1 PE=3 SV=1) HSP 1 Score: 253.832 bits (647), Expect = 3.310e-82 Identity = 141/310 (45.48%), Postives = 200/310 (64.52%), Query Frame = 1 Query: 1 MDFNLENPLG------NFHD-LPWDALP-SLFLIESDHIPPPNYCQTLKASDFDISVRRNVVSLISQLSCTFD-PVLPYLAINYLDRFLANQGILQPKPWANKLLAISCFSLAAKMLKAEYSATDVQVLLNHGEGGVVFETQTVQRMEGIVLGALQWRMRSITPFSFIPFFVDLFRLK--DPAF-RQVLKDRASEIILKSQREIKVLEFKPSIVAASALLYASHELFPFQYPCFLRAISDCSYVNKETVVQCYNVIQ--DIAREEYESVLNINSTSDTPVNVLDEHFLSLESEKTNGVIQEQEFKRRKIT 888 M+F+LE+PL NF+D ++ LP SLFL+E H+P +Y +LK+S F +S R +S I+Q S FD P L YLA+NYLDRFL+++ + Q KPW KL+++SC SL+AKM K + S +D+ V G F+ Q ++RME ++LGAL+WRMRS+TPFSF+ FF+ LF LK DP + LK + S++ Q +I LEFKPS++A +ALL+AS EL P Q+PCF I+ C+YVNK+ +++CY IQ DI E E +++T VNVLD+ F S ES+K+ + KRRK + Sbjct: 1 MEFHLEHPLSHSSLHNNFNDDTDYETLPHSLFLVEFQHMPSSHYFHSLKSSAFLLSNRNQAISSITQYSRKFDDPSLTYLAVNYLDRFLSSEDMPQSKPWILKLISLSCVSLSAKMRKPDMSVSDLPV------EGEFFDAQMIERMENVILGALKWRMRSVTPFSFLAFFISLFELKEEDPLLLKHSLKSQTSDLTFSLQHDISFLEFKPSVIAGAALLFASFELCPLQFPCFSNRINQCTYVNKDELMECYKAIQERDIIVGENE------GSTETAVNVLDQQFSSCESDKSITITASSSPKRRKTS 298
BLAST of Phvul.005G109600.1 vs. DB:Swiss
Match: CCD61_ORYSJ (Cyclin-D6-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCD6-1 PE=2 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.806e-36 Identity = 109/304 (35.86%), Postives = 162/304 (53.29%), Query Frame = 1 Query: 4 DFNLENPLGNFHDLPWDALPSLFLIESDHIPPPNYCQTLKASDFDISVRRNVVSLISQL----SCTFDPVLPYLAINYLDRFLANQGI-LQPKPWANKLLAISCFSLAAKMLKAEY-SATDVQVLLNHGEGGVVFETQTVQRMEGIVLGALQWRMRSITPFSFIPFFVDLF--RLKDPAFRQVLKDRASEIILKSQREIKVLEFKPSIVAASALLYASHELFPFQYPCFLRAISDCSYVNKETVVQCYNVIQDIAREEYESVLNINSTSDTPVNVLDEH-FLSLESEKTNGV---IQEQEFKRR 879 +F+LENP + D P + SL E H P S + RR IS++ P + YLA+NY+DR+L+ + + + PWA +LLAISC +LAAKM +A SA D+Q GE +F+ +QRME +VL AL+WR RS+TP +F+ FF+ + + PA +K RA +++L+ Q E+K+ EF PS+ AA+ALL A+ E+ F ++ C +VN E + +C V+ A S ++++TPV VL H S ESE+T V + KRR Sbjct: 19 EFDLENPFTSPADEP---IASLLDAEGHHSP--------SVSAAASAARREAAGFISKVRYDGELDVHPRVAYLALNYVDRYLSKRQLACERNPWAPRLLAISCLTLAAKMQRAAAISAADIQ----RGEE-FMFDEAKIQRMEQMVLNALEWRTRSVTPLAFLGFFLSACFPQPRHPALLDAIKARAVDLLLRVQPEVKMAEFSPSVAAAAALLAAAGEVAGAHLLGFEAGVAACPFVNSEKLRECGEVMA-AACGVGPSWAAAATSAETPVTVLGHHRSASSESERTTTVGSAANSADAKRR 305
BLAST of Phvul.005G109600.1 vs. DB:Swiss
Match: CCD11_ARATH (Cyclin-D1-1 OS=Arabidopsis thaliana OX=3702 GN=CYCD1-1 PE=1 SV=3) HSP 1 Score: 129.413 bits (324), Expect = 1.320e-33 Identity = 85/248 (34.27%), Postives = 134/248 (54.03%), Query Frame = 1 Query: 46 PWDALPSLFLIESDHIPPPNYCQTLKASDFDISVRRNVVSLISQLSC--TFDPVLPYLAINYLDRFLANQGILQPKPWANKLLAISCFSLAAKMLKAEYSATDVQVLLNHGEGGV--VFETQTVQRMEGIVLGALQWRMRSITPFSFIPFFVDLFRLKDPA--FRQVLKDRASEIILKSQREIKVLEFKPSIVAASALLYASHEL-------FPFQYPCFLRAISDCSYVNKETVVQCYNVIQDIARE 750 P D++ E +P +Y + D S R + V+ I ++ F P+ YLA+NY+DRFL + + + W +LLA++C SLAAKM V L + GV +FE +T++RME +VL L WR+RS+TPF FI FF +++ DP+ F A+EIIL + +E LE+ PS +AA+A+L ++EL P + P + C ++KE +V+CY +++ +A E Sbjct: 48 PGDSIACFIEDERHFVPGHDYLSRFQTRSLDASAREDSVAWILKVQAYYNFQPLTAYLAVNYMDRFLYARRLPETSGWPMQLLAVACLSLAAKM-----EEILVPSLFDFQVAGVKYLFEAKTIKRMELLVLSVLDWRLRSVTPFDFISFFA--YKI-DPSGTFLGFFISHATEIILSNIKEASFLEYWPSSIAAAAILCVANELPSLSSVVNPHESP-----ETWCDGLSKEKIVRCYRLMKAMAIE 282
BLAST of Phvul.005G109600.1 vs. DB:Swiss
Match: CCD41_ORYSJ (Cyclin-D4-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCD4-1 PE=2 SV=2) HSP 1 Score: 129.028 bits (323), Expect = 2.372e-33 Identity = 86/231 (37.23%), Postives = 130/231 (56.28%), Query Frame = 1 Query: 67 LFLIESDHIPPPNYCQTLKAS----DFDISVRRNVVSLISQLSC--TFDPVLPYLAINYLDRFLANQGILQPKPWANKLLAISCFSLAAKMLKAEYSAT-DVQVLLNHGEGGVVFETQTVQRMEGIVLGALQWRMRSITPFSFIPFFVDLFRLKD-PAFRQVLKDRASEIILKSQREIKVLEFKPSIVAASALLYASHELFPFQYPCFLRAISDCSYVNKETVVQCYNVIQ 735 L E+DH+P +Y + L+A D D+ VR + + I ++ +F P+ LA+NYLDRFL+ + K W +LLA++C SLAAKM + + + D+QV GE VFE +T+QRME +VL L+WRM+++TPFS++ +F+ D P+ R L +SE+IL R + L F+PS +AA+ E ++ F S+VNKE + C VIQ Sbjct: 72 LVETEADHMPREDYAERLRAGGGDGDLDLRVRMDAIDWIWKVHSYYSFAPLTACLAVNYLDRFLSLYQLPDGKDWMTQLLAVACLSLAAKMEETDVPQSLDLQV----GEERYVFEAKTIQRMELLVLSTLKWRMQAVTPFSYVDYFLRELNGGDPPSGRSALL--SSELILCIARGTECLGFRPSEIAAAVAAAVVGE----EHAAF-------SHVNKERMSHCQEVIQ 285
BLAST of Phvul.005G109600.1 vs. DB:Swiss
Match: CCD22_ORYSJ (Cyclin-D2-2 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCD2-2 PE=2 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 3.138e-33 Identity = 90/288 (31.25%), Postives = 153/288 (53.12%), Query Frame = 1 Query: 79 ESDHIPPPNYCQTLKASDFDISVRRNVVSLISQLSC--TFDPVLPYLAINYLDRFLANQGILQPKPWANKLLAISCFSLAAKMLKAEYSATDVQVLLNHGEGGVVFETQTVQRMEGIVLGALQWRMRSITPFSFIPFFVDLFRLKDPAFRQVLKDRASEIILKSQREIKVLEFKPSIVAASALLYASHELFPFQYPCFLRAISDCSY-VNKETVVQCYNVIQDIAREEYESVLNINSTSD---TPVNVLDEHFLSLESEKTN-GVIQEQEFKRRKITDYGNKHTVPFS 921 E DH P Y + L+ + S R++ + I ++ F P+ YLA+NYLDRFL++ + + W +LL++SC SLA KM E + + + L + VFE + ++RME IV+ L+WR++++TPFSFI +F+D F P L S++ + + ++ + L F+PS +AA+ +L E Q+ F A+ + VNKE V++CY ++ + + + + N N++S +P+ VLD S S+ T G Q + DY ++ + P S Sbjct: 72 EMDHQPQRGYLEKLELGGLECSWRKDAIDWICKVHSYYNFGPLSLYLAVNYLDRFLSSFNLPHDESWMQQLLSVSCLSLATKM---EETVVPLPMDLQVFDAEYVFEARHIKRMELIVMKTLKWRLQAVTPFSFIGYFLDKFNEGKPP-SYTLASWCSDLTVGTLKDSRFLSFRPSEIAAAVVLAVLAE---NQFLVFNSALGESEIPVNKEMVMRCYELM--VEKALVKKIRNSNASSSVPHSPITVLDAACFSFRSDDTTLGSSQSNSNNK----DYNSQDSAPAS 346
BLAST of Phvul.005G109600.1 vs. DB:Swiss
Match: CCD41_ARATH (Cyclin-D4-1 OS=Arabidopsis thaliana OX=3702 GN=CYCD4-1 PE=1 SV=2) HSP 1 Score: 124.79 bits (312), Expect = 3.348e-32 Identity = 76/193 (39.38%), Postives = 115/193 (59.59%), Query Frame = 1 Query: 79 ESDHIPPPNYCQTLKASDFDISV-RRNVVSLISQLSC---TFDPVLPYLAINYLDRFLANQGILQPKPWANKLLAISCFSLAAKMLKAEYSA-TDVQVLLNHGEGGVVFETQTVQRMEGIVLGALQWRMRSITPFSFIPFFVDLFRLKDPAFRQVLKDRASEIILKSQREIKVLEFKPSIVAASALLYASHEL 642 E H+P +Y + L++ D D++V RR+ ++ I + +C F P+ LA+NYLDRFL+ + K W +LLA++C SLAAK+ + E D+QV G+ VFE ++VQRME +VL L+WR+R+ITP S+I +F+ D L R+ ++I + + I LEF+PS VAA+ L S EL Sbjct: 54 EKQHLPSDDYIKRLRSGDLDLNVGRRDALNWIWK-ACEVHQFGPLCFCLAMNYLDRFLSVHDLPSGKGWILQLLAVACLSLAAKIEETEVPMLIDLQV----GDPQFVFEAKSVQRMELLVLNKLKWRLRAITPCSYIRYFLRKMSKCDQEPSNTLISRSLQVIASTTKGIDFLEFRPSEVAAAVALSVSGEL 241
BLAST of Phvul.005G109600.1 vs. DB:Swiss
Match: CCD42_ORYSJ (Cyclin-D4-2 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCD4-2 PE=2 SV=2) HSP 1 Score: 124.79 bits (312), Expect = 1.134e-31 Identity = 95/301 (31.56%), Postives = 146/301 (48.50%), Query Frame = 1 Query: 52 DALPSLFLIESDHIPPPNYCQTLKAS--DFDISVRRNVVSLISQLSC--TFDPVLPYLAINYLDRFLANQGILQPKPWANKLLAISCFSLAAKMLKAEYSATDVQVLLNHGEGGVVFETQTVQRMEGIVLGALQWRMRSITPFSFIPFFVDLFRLKDPAFRQVLKDRASEIILKSQREIKVLEFKPSIVAASALLYASHELFPFQYPCFLRAISDCSYVNKETVVQCYNVIQDIAREEYESVLNINSTSDTPVN-------------------VLDEHFLSLESEKTN-GVIQEQEFKRRK 882 + + SL E H+P +Y + L+ D D+ VR + I ++ F V YLA+NYLDRFL+ + + + W +LL+++C S+AAKM E + + L GE +FE +T+ RME +VL L WRM+++TPFS+I +F+ + A R L R+SE+IL+ LEF+PS +AA+ + E A ++V+K V+QC IQD + S+ IN+ P + VLD LS +S+ T+ I RRK Sbjct: 76 ECVASLVEREQAHMPRADYGERLRGGGGDVDLRVRSEAIGWIWEVYTYYNFSSVTAYLAVNYLDRFLSQYELPEGRDWMTQLLSVACLSIAAKM---EETVVPQCLDLQIGEPRFLFEVETIHRMELLVLTNLNWRMQAVTPFSYIDYFLRKLNSGNAAPRSWLL-RSSELILRIAAGTGFLEFRPSEIAAAVAATVAGEATGVVEEDIAEAF---THVDKGRVLQCQEAIQD----HHYSMATINTVQPKPASTRRGSASASSSSVPESPVAVLDAGCLSYKSDDTDAATIASHGGGRRK 365
BLAST of Phvul.005G109600.1 vs. DB:Swiss
Match: CCD21_ARATH (Cyclin-D2-1 OS=Arabidopsis thaliana OX=3702 GN=CYCD2-1 PE=1 SV=3) HSP 1 Score: 121.709 bits (304), Expect = 1.423e-30 Identity = 87/277 (31.41%), Postives = 145/277 (52.35%), Query Frame = 1 Query: 52 DALPSLFLIESDHIPPPNYCQTLKASDFDISVRRNVVSLISQLSCT--FDPVLPYLAINYLDRFLANQGILQPKPWANKLLAISCFSLAAKMLKAEY-SATDVQVLLNHGEGGVVFETQTVQRMEGIVLGALQWRMRSITPFSFIPFFVDLFRLKDPAFRQVLKDRASEIILKSQREIKVLEFKPSIVAASALLYASHELFPFQYPCF--LRAISDCSYVNKETVVQCYNVIQDIAREE---------YESVLNINSTSDTPVNVLDEHFLSLESEK 840 D + + + E + P +Y + L + D D+SVR + I ++ F + L++NYLDRFL + + + K WA +LLA+SC SLA+KM + + D+QV + VFE +T++RME +V+ L WR++++TPFSFI +FVD + L R+S IL + + I+ L+F+PS A A + C +A+S YV +E V +C N+++ + EE ++ + + + +PV VL+ LS SE+ Sbjct: 65 DRIKEMLVREIEFCPGTDYVKRLLSGDLDLSVRNQALDWILKVCAHYHFGHLCICLSMNYLDRFLTSYELPKDKDWAAQLLAVSCLSLASKMEETDVPHIVDLQV----EDPKFVFEAKTIKRMELLVVTTLNWRLQALTPFSFIDYFVDKI---SGHVSENLIYRSSRFILNTTKAIEFLDFRPS---EIAAAAAVSVSISGETECIDEEKALSSLIYVKQERVKRCLNLMRSLTGEENVRGTSLSQEQARVAVRAVPASPVGVLEATCLSYRSEE 331
BLAST of Phvul.005G109600.1 vs. DB:Swiss
Match: CCD21_ORYSJ (Cyclin-D2-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCD2-1 PE=3 SV=2) HSP 1 Score: 114.775 bits (286), Expect = 2.104e-28 Identity = 74/224 (33.04%), Postives = 125/224 (55.80%), Query Frame = 1 Query: 79 ESDHIPPPNYCQTLKASDFDISVRRNVVSLISQLS--CTFDPVLPYLAINYLDRFLANQGILQPKPWANKLLAISCFSLAAKMLKAEY-SATDVQVLLNHGEGGVVFETQTVQRMEGIVLGALQWRMRSITPFSFIPFFVDLFRLKDPAFRQVLKDRASEIILKSQREIKVLEFKPSIVAASALLYASHELFPFQYPCFLRAISDCSYVNKETVVQCYNVIQDI 741 E+++ P +Y L++ D + R VS I ++ F P+ YLA+NY+DRFL+ + + + + WA +LLA++C SLAAKM + S D+QV + VFE +T+ RME ++L AL WR+RS+TPF+FI FF K ++ ++ + +I+ L+ PS +AA+A+L A+ E + A++ C + +E + CY ++Q + Sbjct: 59 EAEYSPRSDYPDRLRSRSIDPAARAESVSWILKVQEYNGFLPLTAYLAVNYMDRFLSLRHLPEGQGWAMQLLAVACLSLAAKMEETLVPSLLDLQVECSR----YVFEPRTICRMEFLILTALNWRLRSVTPFTFIDFF-------------ACKHISNAMVQNANSDIQFLDHCPSSMAAAAVLCATGETPSLAFVNPELAVNWCIGLAEEGISSCYQLMQQL 265
BLAST of Phvul.005G109600.1 vs. DB:Swiss
Match: CCD31_ORYSJ (Cyclin-D3-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCD3-1 PE=2 SV=2) HSP 1 Score: 115.161 bits (287), Expect = 2.769e-28 Identity = 91/267 (34.08%), Postives = 140/267 (52.43%), Query Frame = 1 Query: 79 ESDHIPPPNYCQTL--KASDFD-ISVRRNVVSLISQLS--CTFDPVLPYLAINYLDRFLANQGILQPKPWANKLLAISCFSLAAKMLKAEYSATDVQVLLNHGEGGVVFETQTVQRMEGIVLGALQWRMRSITPFSFIPFFVDLFRLKDPAFRQVLKDRASEIILKSQREIKVLEFKPSIVAASALLYASHELFPFQYPCFLRAISDCSYVNKETVVQCYNVIQD------IAREEYESVLNINSTSDTPVNVLD-EHFLSLESEKT 843 E HIP Y Q L + D ++VR + + I ++ F P+ L++NYLDRFL+ + Q + +LLA++ SLAAKM E + + L + VFET+T++RME VL AL+WRM+++T SFI +++ F D L R+ ++IL + + + L F+PS +AAS L A E + F R + + KE V++CY +IQD I R+ SV +I +P+ VLD +S +SE T Sbjct: 64 EQQHIPMEGYLQRLLLQPDGLDLVAVRSDAIDWIWKVHELYKFGPLTAVLSVNYLDRFLSVFDLPQEEACMTQLLAVASLSLAAKM---EETVVPHPLDLQVCDAKYVFETRTIKRMELAVLNALKWRMQAVTACSFIDYYLHKFNDDDTPSTSALS-RSVDLILSTCKVAEFLVFRPSEIAASVALVALEE---HETSMFERVATCYKNLKKERVLRCYEMIQDKIIMRNIMRQSAGSVFSIPK---SPIGVLDAAACISQQSEDT 320 The following BLAST results are available for this feature:
BLAST of Phvul.005G109600.1 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
Sequences
The
following sequences are available for this feature:
protein sequence of Phvul.005G109600.1_Pv_G19833_v2.1 >Phvul.005G109600.1_Pv_G19833_v2.1 ID=Phvul.005G109600.1_Pv_G19833_v2.1; Name=Phvul.005G109600.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=313bpback to top mRNA from alignment at Chr05:33252292..33254387+ Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Phvul.005G109600.1_Pv_G19833_v2.1 ID=Phvul.005G109600.1_Pv_G19833_v2.1; Name=Phvul.005G109600.1; organism=Phaseolus vulgaris; type=mRNA; length=2096bp; location=Sequence derived from: Chr05:33252292..33254387+ (Phaseolus vulgarisback to top Coding sequence (CDS) from alignment at Chr05:33252292..33254387+ >Phvul.005G109600.1_Pv_G19833_v2.1 ID=Phvul.005G109600.1_Pv_G19833_v2.1; Name=Phvul.005G109600.1; organism=Phaseolus vulgaris; type=CDS; length=939bp; location=Sequence derived from: Chr05:33252292..33254387+ (Phaseolus vulgarisback to top |