Phvul.005G110250.1

Transcript Overview
NamePhvul.005G110250.1
Unique NamePhvul.005G110250.1_Pv_G19833_v2.1
TypemRNA
OrganismPhaseolus vulgaris (Common bean)
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr05supercontigChr05:33659529..33661267 -Phaseolus vulgaris G19833 genome v2.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Phaseolus vulgaris G19833 genome v2.12019-09-17
InterProScan: Phaseolus vulgaris G19833 genome v2.12019-10-18
BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot2019-10-18
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
pvpvL105Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvpvL109Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvpvR247Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pspvL467Pisum sativum Cameor genome v1aPisum sativum
pspvL483Pisum sativum Cameor genome v1aPisum sativum
pvvuR481Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pvvuR493Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccpvL0222Cajanus cajan Asha genome v1.0Cajanus cajan
ccpvL0366Cajanus cajan Asha genome v1.0Cajanus cajan
aspvL160Vigna angularis Jingnong 6 genome v1.1Vigna angularis
aspvL212Vigna angularis Jingnong 6 genome v1.1Vigna angularis
aspvL691Vigna angularis Jingnong 6 genome v1.1Vigna angularis
aspvL699Vigna angularis Jingnong 6 genome v1.1Vigna angularis
pvzwsR469Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvzwsR486Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvvfhR481Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvvfhR528Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvtifR475Vicia faba cv. Tiffany genome v1.0Vicia faba
pvtifR478Vicia faba cv. Tiffany genome v1.0Vicia faba
pvtifR524Vicia faba cv. Tiffany genome v1.0Vicia faba
pvvrvR445Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvrvR449Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvrvR470Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvuaR417Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvuaR429Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvuaR437Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvuaR447Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvssR535Vicia sativa cv. Studenica genome v1.0Vicia sativa
pvvssR566Vicia sativa cv. Studenica genome v1.0Vicia sativa
avjpvL090Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjpvL130Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjpvL669Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjpvL679Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
ccapvL124Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapvL139Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapvL482Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapvL778Cajanus cajan cv. Asha genome v2.0Cajanus cajan
pvvumR516Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvumR536Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvumR537Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvumR558Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvvaR528Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvvaR563Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvasR523Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvasR533Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvasR535Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvasR559Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvstR524Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvvstR534Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvvstR536Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvvstR561Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvpvfR444Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR452Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR457Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR460Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR469Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvvunR444Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
pvvunR456Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
Va05G038200.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
LR48_mrnaVigan05g130900Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Phvul.005G110250Phvul.005G110250_Pv_G19833_v2.1Phaseolus vulgarisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Phvul.005G110250.1Phvul.005G110250.1_Pv_G19833_v2.1-proteinPhaseolus vulgarispolypeptide
Phvul.005G110250.1_Pv_G19833_v2.1Phvul.005G110250.1_Pv_G19833_v2.1Phaseolus vulgarispolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.005G110250.1.v2.1.CDS.4Phvul.005G110250.1.v2.1.CDS.4_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.005G110250.1.v2.1.CDS.3Phvul.005G110250.1.v2.1.CDS.3_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.005G110250.1.v2.1.CDS.2Phvul.005G110250.1.v2.1.CDS.2_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.005G110250.1.v2.1.CDS.1Phvul.005G110250.1.v2.1.CDS.1_Pv_G19833_v2.1Phaseolus vulgarisCDS


Homology
The following BLAST results are available for this feature:
BLAST of Phvul.005G110250.1 vs.
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF04195Transposase_28coord: 85..140
e-value: 3.9E-14
score: 52.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 281..336
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 303..318

Sequences
The following sequences are available for this feature:

protein sequence of Phvul.005G110250.1_Pv_G19833_v2.1

>Phvul.005G110250.1_Pv_G19833_v2.1 ID=Phvul.005G110250.1_Pv_G19833_v2.1; Name=Phvul.005G110250.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=516bp
MRVKKPEKPSMCGSMRKSVEVFSEFTKVSMLKDFVESVDIVLEGVPNGAF
ALRKCREFETVCLGRGKERKDFFYFYSCLISDIHVRFPFDAFTMEVLRIL
NVAHSQLHPNSWALLQAFRVLCEVLSVKATARSFLHFFGTRPGDRIGWVS
LVGQAKNNFAPYTTSYKNFKGFLFYWTKDPTRINVWPRSLMIDVDLEVLS
VLDQLPRKIPTRSLVRAYLSSDRCVDIDGIMASLVPLGGKKDYFRELRLK
RQARKVEGGEVSGGFATPIAEVTIPLTTVPAVETNCPPTNPKKRKKDYGK
GCGKSSRRHGERSSSGKSPKRGRVAGGSSSSDPDFLGHELKVADKVTVKL
NPYQQDAYLSVRPSQMHDAFLELCSRTLVLGKRMTSDLMKRDKNAVEAEG
LRVKLGESIAKLQSALTENANLSARNQGREVVEKADEEIRGLKESLSDMA
LTNHRSKEKIDKPLKELKVAKDSIMEEHELGFKKVLQQATFFYNVPWTKG
NLMLTRTSMMVSSCR*
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mRNA from alignment at Chr05:33659529..33661267-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Phvul.005G110250.1_Pv_G19833_v2.1 ID=Phvul.005G110250.1_Pv_G19833_v2.1; Name=Phvul.005G110250.1; organism=Phaseolus vulgaris; type=mRNA; length=1739bp; location=Sequence derived from: Chr05:33659529..33661267- (Phaseolus vulgaris
ATGAGGGTGAAGAAACCCGAGAAGCCGAGTATGTGTGGGTCAATGAGAAA
GTCCGTTGAGGTTTTTTCGGAGTTCACAAAGGTTTCTATGCTCAAAGATT
TTGTGGAAAGTGTAGATATAGTGTTAGAAGGTGTGCCTAACGGTGCCTTC
GCACTCCGTAAGTGTCGAGAGTTCGAGACCGTTTGTCTGGGTAGGGGGAA
AGAGCGCAAAGATTTCTTTTACTTTTATTCTTGTTTGATTTCGGATATCC
ATGTCCGTTTTCCTTTCGATGCTTTTACCATGGAAGTGTTGCGTATCTTA
AACGTAGCACATTCACAACTGCATCCGAATAGTTGGGCTTTGCTCCAGGC
TTTTAGGGTGTTGTGTGAGGTGCTAAGTGTTAAGGCGACTGCCAGGTCTT
TTTTACACTTCTTTGGTACGAGGCCGGGTGACCGAATAGGTTGGGTGTCT
TTGGTTGGTCAAGCGAAAAATAACTTTGCTCCTTACACGACTTCTTATAA
GAACTTTAAAGGTGGTTTCTTTAAAGTTGTCGTTGAGGAGGAAGGTTGAC
CATTTTTCTTTGACGACAAAACTCCCAGGTTTCCTTTTCTATTGGACGAA
GGATCCAACACGCATCAATGTATGGCCAAGGTCCTTGATGATCGATGTTG
ACCTAGAAGTGTTGTCGGTATTGGACCAACTTCCACGCAAGATTCCAACC
CGATCTCTCGTTCGTGCTTACTTATCGTCTGATAGATGTGTAGATATTGA
CGGTATGTGATTCTACTCGTCTTAATGCTTATCTGACTATTATTGACTTA
ATCCTTTCGTTTTGTGTAGGTATAATGGCAAGTCTAGTCCCGCTAGGTGG
GAAGAAGGATTATTTTCGAGAGTTGCGTTTGAAGAGGCAAGCACGAAAGG
TCGAGGGAGGAGAAGTGTCGGGAGGGTTTGCTACGCCGATTGCAGAGGTA
ACTATTCCTCTCACTACGGTGCCTGCTGTTGAGACCAATTGTCCTCCTAC
TAACCCAAAGAAGAGGAAGAAGGATTATGGGAAAGGCTGTGGCAAATCCT
CTCGGCGTCACGGGGAACGTTCTTCCTCGGGGAAGTCTCCCAAAAGAGGC
CGAGTGGCCGGTGGTTCGAGTTCAAGTGACCCCGATTTCCTTGGTCATGA
GCTTAAGGTGGCTGATAAGGTCACTGTCAAGCTGAACCCCTATCAACAAG
ATGCGTACCTCTCAGTGCGTCCTTCCCAAATGCACGACGCATTTCTGGAG
TTGTGTTCCAGGACTCTAGTTCTCGGCAAACGGATGACATCAGACTTAAT
GAAAAGGGACAAGAATGCTGTCGAAGCGGAGGGTCTTCGAGTCAAGTTGG
GCGAGTCGATTGCCAAGTTGCAGTCAGCACTGACCGAGAACGCCAACCTC
TCGGCTCGAAATCAAGGTCTGGAGGCCGAGATGAAGAAATGGAAAGAAAG
GTGTGAGTTGGCTTAGAAGACAGGGAGAGAGGTTGTCGAAAAGGCGGATG
AAGAGATCCGGGGTCTGAAGGAGAGTCTCTCGGATATGGCCTTGACCAAC
CATAGGTCCAAAGAGAAGATAGATAAGCCGCTGAAGGAGCTAAAGGTGGC
CAAAGATAGCATTATGGAAGAACACGAGCTTGGCTTCAAGAAGGTTCTCC
AACAAGCGACTTTCTTCTACAATGTTCCTTGGACGAAGGGAAATTTGATG
TTGACAAGGACTTCTATGATGGTCAGCTCATGCCGATAG
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Coding sequence (CDS) from alignment at Chr05:33659529..33661267-

>Phvul.005G110250.1_Pv_G19833_v2.1 ID=Phvul.005G110250.1_Pv_G19833_v2.1; Name=Phvul.005G110250.1; organism=Phaseolus vulgaris; type=CDS; length=1548bp; location=Sequence derived from: Chr05:33659529..33661267- (Phaseolus vulgaris
ATGAGGGTGAAGAAACCCGAGAAGCCGAGTATGTGTGGGTCAATGAGAAA
GTCCGTTGAGGTTTTTTCGGAGTTCACAAAGGTTTCTATGCTCAAAGATT
TTGTGGAAAGTGTAGATATAGTGTTAGAAGGTGTGCCTAACGGTGCCTTC
GCACTCCGTAAGTGTCGAGAGTTCGAGACCGTTTGTCTGGGTAGGGGGAA
AGAGCGCAAAGATTTCTTTTACTTTTATTCTTGTTTGATTTCGGATATCC
ATGTCCGTTTTCCTTTCGATGCTTTTACCATGGAAGTGTTGCGTATCTTA
AACGTAGCACATTCACAACTGCATCCGAATAGTTGGGCTTTGCTCCAGGC
TTTTAGGGTGTTGTGTGAGGTGCTAAGTGTTAAGGCGACTGCCAGGTCTT
TTTTACACTTCTTTGGTACGAGGCCGGGTGACCGAATAGGTTGGGTGTCT
TTGGTTGGTCAAGCGAAAAATAACTTTGCTCCTTACACGACTTCTTATAA
GAACTTTAAAGGTTTCCTTTTCTATTGGACGAAGGATCCAACACGCATCA
ATGTATGGCCAAGGTCCTTGATGATCGATGTTGACCTAGAAGTGTTGTCG
GTATTGGACCAACTTCCACGCAAGATTCCAACCCGATCTCTCGTTCGTGC
TTACTTATCGTCTGATAGATGTGTAGATATTGACGGTATAATGGCAAGTC
TAGTCCCGCTAGGTGGGAAGAAGGATTATTTTCGAGAGTTGCGTTTGAAG
AGGCAAGCACGAAAGGTCGAGGGAGGAGAAGTGTCGGGAGGGTTTGCTAC
GCCGATTGCAGAGGTAACTATTCCTCTCACTACGGTGCCTGCTGTTGAGA
CCAATTGTCCTCCTACTAACCCAAAGAAGAGGAAGAAGGATTATGGGAAA
GGCTGTGGCAAATCCTCTCGGCGTCACGGGGAACGTTCTTCCTCGGGGAA
GTCTCCCAAAAGAGGCCGAGTGGCCGGTGGTTCGAGTTCAAGTGACCCCG
ATTTCCTTGGTCATGAGCTTAAGGTGGCTGATAAGGTCACTGTCAAGCTG
AACCCCTATCAACAAGATGCGTACCTCTCAGTGCGTCCTTCCCAAATGCA
CGACGCATTTCTGGAGTTGTGTTCCAGGACTCTAGTTCTCGGCAAACGGA
TGACATCAGACTTAATGAAAAGGGACAAGAATGCTGTCGAAGCGGAGGGT
CTTCGAGTCAAGTTGGGCGAGTCGATTGCCAAGTTGCAGTCAGCACTGAC
CGAGAACGCCAACCTCTCGGCTCGAAATCAAGGGAGAGAGGTTGTCGAAA
AGGCGGATGAAGAGATCCGGGGTCTGAAGGAGAGTCTCTCGGATATGGCC
TTGACCAACCATAGGTCCAAAGAGAAGATAGATAAGCCGCTGAAGGAGCT
AAAGGTGGCCAAAGATAGCATTATGGAAGAACACGAGCTTGGCTTCAAGA
AGGTTCTCCAACAAGCGACTTTCTTCTACAATGTTCCTTGGACGAAGGGA
AATTTGATGTTGACAAGGACTTCTATGATGGTCAGCTCATGCCGATAG
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