Phvul.005G117500.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Phvul.005G117500.1 vs. DB:Swiss
Match: FLA17_ARATH (Fasciclin-like arabinogalactan protein 17 OS=Arabidopsis thaliana OX=3702 GN=FLA17 PE=2 SV=1) HSP 1 Score: 559.296 bits (1440), Expect = 0.000e+0 Identity = 315/467 (67.45%), Postives = 367/467 (78.59%), Query Frame = 1 Query: 1 MGSGIYGASD-LRILCTVVLMVYGLPQALTLRESSPSSPTAQINSNSILVALLDSQYTELAELVEKAMLLEKLEETVATHNITIFAPTNQALDRNLDADFKRFLLQPANLHSLQTLLLSHIIPTQIGSQTL-------IRHVTTLSNHQIRLS--ANLTAVDQARVTHPDVLTRPDGVIHAIDRLLLPRSVEHDFNRRRTLRSISAVKPEGAPEVDPRTHRXXXXXXXXXXXXXXXXXIYDXXXXXXXXXXXXXXXXXXXHHHFNGEKQVKDFIHTLLHYGGYNEMADILVNLTSLAVEMGHLVSEGYILTVLAPNDEAVAKLTTEQLSEPGAPERIMYYHIIPEYQTEESMYNAVRRFGKVRYDTLRLPHKVVAQEADGSVKFGRGDGSAYLFDPDIYTDGRISVQGIDGVLFPIDEEEEAERVKPATRSGQPAAKVVMHRRGKLQETACWMLGAFGQHSRFTTCQ 1371 M IYG S + + ++++ AL+ + SPSS + QINSNS+LVALLDS+YTELAELVEKA+LL+ LE+ V HNITIFAP N+AL+R+LD +FKRFLL+P NL SLQTLL+ HIIP ++GS ++H TL N Q+RLS VD A + PD LTRPDG+IH I+RLL+PRSV+ DFNRRR+L+SISAV PEGAPEVDPRT+RLKKP P GS PAL I A++PGPSLAPAPAPGPGG HHF+GE QVKDFIHTLLHYGGYNEMADILVNLTSLA EMG LVSEGY+LTVLAPNDEA+AKLTT+QLSEPGAPE+I+YYHIIPEYQTEESMYN+VRRFGKV++DTLR PHKV A+EADGSVKFG G+ SAYLFDPDIYTDGRISVQGIDGVLFP EEE E VK +P K+V RRGKL E AC MLGAFG+ + + C+ Sbjct: 1 MDRRIYGGSAVIHLFLFFSVLIFSAASALS-KNQSPSSGSGQINSNSVLVALLDSRYTELAELVEKALLLQTLEDAVGRHNITIFAPRNEALERDLDPEFKRFLLEPGNLKSLQTLLMFHIIPNRVGSNQWPSEESGRVKH-HTLGNDQVRLSNGQGKKMVDLAEIIRPDDLTRPDGLIHGIERLLIPRSVQEDFNRRRSLQSISAVLPEGAPEVDPRTNRLKKPAAPVPAGSPPALPIQSAMAPGPSLAPAPAPGPGGKQHHFDGEAQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIVYYHIIPEYQTEESMYNSVRRFGKVKFDTLRFPHKVAAKEADGSVKFGDGEKSAYLFDPDIYTDGRISVQGIDGVLFP-QEEEVVESVK------KPVKKIVQPRRGKLLEVACSMLGAFGKDTYLSKCR 458
BLAST of Phvul.005G117500.1 vs. DB:Swiss
Match: FLA16_ARATH (Fasciclin-like arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=FLA16 PE=2 SV=1) HSP 1 Score: 545.043 bits (1403), Expect = 0.000e+0 Identity = 308/423 (72.81%), Postives = 339/423 (80.14%), Query Frame = 1 Query: 118 AQINSNSILVALLDSQYTELAELVEKAMLLEKLEETVATHNITIFAPTNQALDRNLDADFKRFLLQPANLHSLQTLLLSHIIPTQIGSQ---TLIRHVTTLSNHQIRLSA--NLTAVDQARVTHPDVLTRPDGVIHAIDRLLLPRSVEHDFNRRRTLRSISAVKPEGAPEVDPRTHRXXXXXXXXXXXXXXXXXIYDXXXXXXXXXXXXXXXXXXXHHHFNGEKQVKDFIHTLLHYGGYNEMADILVNLTSLAVEMGHLVSEGYILTVLAPNDEAVAKLTTEQLSEPGAPERIMYYHIIPEYQTEESMYNAVRRFGKVRYDTLRLPHKVVAQEADGSVKFGRGDGSAYLFDPDIYTDGRISVQGIDGVLFPIDEEEEAERVKPATRSGQPAAKVVMHRRGKLQETACWMLGAFGQHSRFTTCQ 1371 QINSNS+LVALLDS YTELAELVEKA+LL+ LEE V HNITIFAP N AL+RNLD FK FLL+P NL SLQ+LL+ HI+P +I S +L H TLSN + L+ N VD A + PD + RPDG+IH I+RLL+PRSV+ DFNRRR+LRSISAV PEGAPEVDPRTHRLKKP P G+ P L IYDA+SPGPSLAPAPAPGPGGP HFNG+ QVKDFIHTLLHYGGYNEMADILVNLTSLA EMG LVSEGY+LTVLAPNDEA+AKLTT+QLSEPGAPE+IMYYHIIPEYQTEESMYNAVRRFGKV+YD+LR PHKV+AQEADGSVKFG GDGSAYLFDPDIYTDGRISVQGIDGVLFP EE A +KPA KV RRGKL E AC M+G SRF CQ Sbjct: 32 GQINSNSVLVALLDSHYTELAELVEKALLLQTLEEAVGKHNITIFAPRNDALERNLDPLFKSFLLEPRNLKSLQSLLMFHILPKRITSPQWPSLSHHHRTLSNDHLHLTVDVNTLKVDSAEIIRPDDVIRPDGIIHGIERLLIPRSVQEDFNRRRSLRSISAVIPEGAPEVDPRTHRLKKPSPAVPAGAPPVLPIYDAMSPGPSLAPAPAPGPGGPRGHFNGDAQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIMYYHIIPEYQTEESMYNAVRRFGKVKYDSLRFPHKVLAQEADGSVKFGHGDGSAYLFDPDIYTDGRISVQGIDGVLFP-KEETPATEIKPAAPV---VKKVSKSRRGKLMEVACRMMG-----SRFIPCQ 445
BLAST of Phvul.005G117500.1 vs. DB:Swiss
Match: FLA15_ARATH (Fasciclin-like arabinogalactan protein 15 OS=Arabidopsis thaliana OX=3702 GN=FLA15 PE=2 SV=1) HSP 1 Score: 543.888 bits (1400), Expect = 0.000e+0 Identity = 306/435 (70.34%), Postives = 347/435 (79.77%), Query Frame = 1 Query: 82 LTLRESSPSSP-TAQINSNSILVALLDSQYTELAELVEKAMLLEKLEETVATHNITIFAPTNQALDRNLDADFKRFLLQPANLHSLQTLLLSHIIPTQIGSQTLIRHVT---TLSNHQIRLSANLTAVDQARVTHPDVLTRPDGVIHAIDRLLLPRSVEHDFNRRRTLRSISAVKPEGAPEVDPRTHRXXXXXXXXXXXXXXXXXIYDXXXXXXXXXXXXXXXXXXXHHHFNGEKQVKDFIHTLLHYGGYNEMADILVNLTSLAVEMGHLVSEGYILTVLAPNDEAVAKLTTEQLSEPGAPERIMYYHIIPEYQTEESMYNAVRRFGKVRYDTLRLPHKVVAQEADGSVKFGRGDGSAYLFDPDIYTDGRISVQGIDGVLFPIDEEEEAERVKPATRSGQPAAKVVMH-RRGKLQETACWMLGAFGQHSRFTTCQ 1371 +++ + P P + QINSNS+LVALLDS YTELAELVEKA+LL+ LEE V HNITIFAP N AL++NLD +FK FLLQP NL SLQ+LL+ HI+P +I S V TLSN + + V+ A +T PD LTRPDG+IH I+RLL+PRSV+ DFNRRR+LRSI+AV PEGAPEVDPRTHRLKK P P G+ P L +YDA+SPGPSLAPAPAPGPGGP HHFNGE QVKDFIHTLLHYGGYNEMADILVNLTSLA EMG LVSEGY+LTVLAPNDEA+AKLTT+QLSEPGAPE+IMYYHIIPEYQTEESMYN+VRRFGK+RYD+LR PHKV AQEADGSVKFG GDGSAYLFDPDIYTDGRISVQGIDGVLFP +E+ E+ ++G P K RRGKL E AC MLG S+F TCQ Sbjct: 15 ISITTALPDKPGSGQINSNSVLVALLDSHYTELAELVEKALLLQTLEEAVGQHNITIFAPRNDALEKNLDPEFKSFLLQPKNLKSLQSLLMFHILPKRITSPQFSSAVVSHRTLSNDHLHFTNG--KVNSAEITKPDDLTRPDGIIHGIERLLIPRSVQEDFNRRRSLRSIAAVLPEGAPEVDPRTHRLKKKPAPIPAGAPPVLPVYDAMSPGPSLAPAPAPGPGGPRHHFNGEAQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIMYYHIIPEYQTEESMYNSVRRFGKIRYDSLRFPHKVEAQEADGSVKFGHGDGSAYLFDPDIYTDGRISVQGIDGVLFP-EEKTPVEK-----KTGVPVVKKAPKPRRGKLMEVACTMLG-----SQFPTCQ 436
BLAST of Phvul.005G117500.1 vs. DB:Swiss
Match: FLA18_ARATH (Fasciclin-like arabinogalactan protein 18 OS=Arabidopsis thaliana OX=3702 GN=FLA18 PE=2 SV=1) HSP 1 Score: 532.717 bits (1371), Expect = 0.000e+0 Identity = 307/471 (65.18%), Postives = 352/471 (74.73%), Query Frame = 1 Query: 1 MGSGIYGASDLRILCTVVLMVYGLPQALTLRESSPS-SPTAQINSNSILVALLDSQYTELAELVEKAMLLEKLEETVATHNITIFAPTNQALDRNLDADFKRFLLQPANLHSLQTLLLSHIIPTQIGSQTL-------IRHVTTLSNHQIRLSA-----NLTAVDQARVTHPDVLTRPDGVIHAIDRLLLPRSVEHDFNRRRTLRSISAVKPEGAPEVDPRTHRXXXXXXXXXXXXXX--XXXIYDXXXXXXXXXXXXXXXXXXXHHHFNGEKQVKDFIHTLLHYGGYNEMADILVNLTSLAVEMGHLVSEGYILTVLAPNDEAVAKLTTEQLSEPGAPERIMYYHIIPEYQTEESMYNAVRRFGKVRYDTLRLPHKVVAQEADGSVKFGRGDGSAYLFDPDIYTDGRISVQGIDGVLFPIDEEEEAERVKPATRSGQPAAKVVMHRRGKLQETACWMLGAFGQHSRFTTC 1368 M IYG S + T+ + L A L + + + QINSNS+LVALLDS+YTELAELVEKA+LL+ LE+ V HNITIFAP N+AL+R+LD DFKRFLLQP NL SLQTLLLSHIIP ++GS ++HVT + + LS V+ A +T PD LTRPDG+IH I+RLL+PRSV+ DFNRRR LRSISAV PEGAPE+DPRT+RLKK + L I A++PGPSLAPAPAPGPGG H HFNG+ QVKDFIHTLLHYGGYNEMADILVNLTSLA EMG LVSEGY+LTVLAPNDEA+ KLTT+QLSEPGAPE+IMYYHIIPEYQTEESMYN+VRRFGKV+Y+TLR PHKV A+EADGSVKFG GD SAYLFDPDIYTDGRISVQGIDGVLFP ++EEE + P KVV RRGKL E AC MLGA G+ S + C Sbjct: 1 MDRCIYGCS----VITIFFSFFFLLNASALESGHHNITGSGQINSNSVLVALLDSRYTELAELVEKALLLQTLEDAVGRHNITIFAPRNEALERDLDPDFKRFLLQPGNLKSLQTLLLSHIIPKRVGSNQWPEENSGRVKHVTLGHDQVLHLSKLKGTNGKRLVNSAVITRPDDLTRPDGLIHGIERLLIPRSVQEDFNRRRNLRSISAVLPEGAPEIDPRTNRLKKSATAVSVPAGSPPVLPIESAMAPGPSLAPAPAPGPGGAHKHFNGDAQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMGKLTTDQLSEPGAPEQIMYYHIIPEYQTEESMYNSVRRFGKVKYETLRFPHKVGAKEADGSVKFGSGDRSAYLFDPDIYTDGRISVQGIDGVLFPEEKEEETVKKPTG-----PVKKVVQPRRGKLLEVACSMLGAIGKDSYLSRC 462
BLAST of Phvul.005G117500.1 vs. DB:Swiss
Match: STAB2_MOUSE (Stabilin-2 OS=Mus musculus OX=10090 GN=Stab2 PE=1 SV=1) HSP 1 Score: 60.8474 bits (146), Expect = 2.217e-8 Identity = 51/188 (27.13%), Postives = 89/188 (47.34%), Query Frame = 1 Query: 13 IYGASDLRILCTVVLMVYGLPQALTLRESSPSSPTAQINSNSILVALLDSQYTELAELVEKAMLLEKLEETVATHNITIFAPTNQALDRNLDADFKRFLLQPANLHSLQTLLLSHIIP-TQIGSQTLIR--HVTTLSNHQI--------RLSANLTAVDQARVTHPDVLTRPDGVIHAIDRLLLPRSV 543 +YG+ ++I+ ++ GL L R PT + N ++ +L +Y + L+EK + + LE+ TIF P+N+AL N+ A +LL P L L+ HI+ TQ+ TL+ H+ +++N I ++ AN AVD+ V +G I+ + +L+P S+ Sbjct: 485 LYGSKIVQIIQGNIVASNGLVHILD-RAMDKIEPTLESNPQQTIMTMLQPRYGKFRSLLEKTNVGQALEKGGIDEPYTIFVPSNEALS-NMTAGVLDYLLSPEGSRKLLELVRYHIVAFTQLEVATLVSTLHIRSMANQIITFNISSKGQILANNVAVDETEV------AAKNGRIYTLTGVLIPPSI 664
BLAST of Phvul.005G117500.1 vs. DB:Swiss
Match: STAB2_HUMAN (Stabilin-2 OS=Homo sapiens OX=9606 GN=STAB2 PE=1 SV=3) HSP 1 Score: 60.4622 bits (145), Expect = 2.567e-8 Identity = 43/153 (28.10%), Postives = 75/153 (49.02%), Query Frame = 1 Query: 112 PTAQINSNSILVALLDSQYTELAELVEKAMLLEKLEETVATHNITIFAPTNQALDRNLDADFKRFLLQPANLHSLQTLLLSHIIP-TQIGSQTLIR--HVTTLSNHQIRLSANLTAVDQARVTHPDV------LTRPDGVIHAIDRLLLPRSV 543 PT + N+ ++ +L +Y++ L+E+ L L+E TIF P N+AL+ D +LL P L L+ HI+P TQ+ TLI H+ +++N I+ + D ++ DV +T +G I+ + +L+P S+ Sbjct: 510 PTFESNNEQTIMTMLQPRYSKFRSLLEETNLGHALDEDGVGGPYTIFVPNNEALNNMKDGTLD-YLLSPEGSRKLLELVRYHIVPFTQLEVATLISTPHIRSMANQLIQFN----TTDNGQILANDVAMEEIEITAKNGRIYTLTGVLIPPSI 657 The following BLAST results are available for this feature:
BLAST of Phvul.005G117500.1 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot) Total hits: 6
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
Sequences
The
following sequences are available for this feature:
protein sequence of Phvul.005G117500.1_Pv_G19833_v2.1 >Phvul.005G117500.1_Pv_G19833_v2.1 ID=Phvul.005G117500.1_Pv_G19833_v2.1; Name=Phvul.005G117500.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=458bpback to top mRNA from alignment at Chr05:35151153..35154731+ Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Phvul.005G117500.1_Pv_G19833_v2.1 ID=Phvul.005G117500.1_Pv_G19833_v2.1; Name=Phvul.005G117500.1; organism=Phaseolus vulgaris; type=mRNA; length=3579bp; location=Sequence derived from: Chr05:35151153..35154731+ (Phaseolus vulgarisback to top Coding sequence (CDS) from alignment at Chr05:35151153..35154731+ >Phvul.005G117500.1_Pv_G19833_v2.1 ID=Phvul.005G117500.1_Pv_G19833_v2.1; Name=Phvul.005G117500.1; organism=Phaseolus vulgaris; type=CDS; length=1374bp; location=Sequence derived from: Chr05:35151153..35154731+ (Phaseolus vulgarisback to top |