Phvul.005G117500.1

Transcript Overview
NamePhvul.005G117500.1
Unique NamePhvul.005G117500.1_Pv_G19833_v2.1
TypemRNA
OrganismPhaseolus vulgaris (Common bean)
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr05supercontigChr05:35151153..35154731 +Phaseolus vulgaris G19833 genome v2.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Phaseolus vulgaris G19833 genome v2.12019-09-17
InterProScan: Phaseolus vulgaris G19833 genome v2.12019-10-18
BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot2019-10-18
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
pvpvL016Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvpvL108Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvpvR249Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pspvL228Pisum sativum Cameor genome v1aPisum sativum
pspvL467Pisum sativum Cameor genome v1aPisum sativum
pspvL479Pisum sativum Cameor genome v1aPisum sativum
pspvL833Pisum sativum Cameor genome v1aPisum sativum
pvvuR474Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pvvuR481Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pvvuR493Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pvvuR510Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caipvL0049Cicer arietinum ICC 4958 genome v2Cicer arietinum
caipvL0289Cicer arietinum ICC 4958 genome v2Cicer arietinum
crpvL075Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
capvL043Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
crpvL274Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
capvL233Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
crpvL745Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
capvL621Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccpvL0143Cajanus cajan Asha genome v1.0Cajanus cajan
ccpvL0208Cajanus cajan Asha genome v1.0Cajanus cajan
ccpvL0582Cajanus cajan Asha genome v1.0Cajanus cajan
anpvL0150Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0331Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0665Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0872Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL1030Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL1168Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL1224Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL1302Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL1378Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
aspvL156Vigna angularis Jingnong 6 genome v1.1Vigna angularis
aspvL691Vigna angularis Jingnong 6 genome v1.1Vigna angularis
pvzwsR447Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvzwsR469Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvzwsR486Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvvfhR481Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvvfhR523Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvvfhR536Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvtifR478Vicia faba cv. Tiffany genome v1.0Vicia faba
pvtifR520Vicia faba cv. Tiffany genome v1.0Vicia faba
pvtifR530Vicia faba cv. Tiffany genome v1.0Vicia faba
pvvrvR447Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvrvR455Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvrvR479Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvuaR417Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvuaR429Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvuaR448Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvssR535Vicia sativa cv. Studenica genome v1.0Vicia sativa
pvvssR556Vicia sativa cv. Studenica genome v1.0Vicia sativa
pvvssR582Vicia sativa cv. Studenica genome v1.0Vicia sativa
canpvL037Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canpvL214Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canpvL604Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjpvL090Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjpvL669Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carpvL053Cicer arietinum
carpvL223Cicer arietinum
carpvL598Cicer arietinum
ccapvL124Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapvL289Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapvL379Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapvL482Cajanus cajan cv. Asha genome v2.0Cajanus cajan
pvvumR521Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvumR534Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvumR537Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvumR558Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvvaR517Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvvaR536Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvvaR563Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvvaR566Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvvaR573Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvasR535Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvasR559Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvasR571Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvstR532Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvvstR536Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvvstR561Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvvstR576Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvpvfR429Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR444Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR457Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR474Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvvunR438Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
pvvunR444Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
pvvunR456Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
Va08G057080.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Cr_05468.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
rna-KK1_030079Cajanus cajan Asha genome v1.0Cajanus cajan
Vfaba.Tiffany.R1.5g124720.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Vfaba.Hedin2.R1.1g059280.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Vfaba.Tiffany.R1.6g009760.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Cc_v2.0_09627.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Psat05G0730200-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Cc_v2.0_07996.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Vigst.06G143000.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
rna-KK1_034938Cajanus cajan Asha genome v1.0Cajanus cajan
jg31596.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
jg7463.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vigun05g230200.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-KK1_003228Cajanus cajan Asha genome v1.0Cajanus cajan
rna-XM_012714219.2Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Vfaba.Hedin2.R1.5g155480.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
evm.model.Chr05.2198.1.62113177Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
rna-TanjilR_00288Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Va05G046460.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
rna-TanjilR_23692Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Psat03G0115700-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
XM_058923645.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Ca_00877Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
evm.model.Chr11.1166Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Ca_00728.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Vigun01g182300.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Ca_07926.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Vum_07G00650.1Vigna umbellata FF25 genome v1.0Vigna umbellata
rna-XM_027335779.1Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Vigan.07G081600.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Vfaba.Tiffany.R1.1g040600.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Cc_v2.0_23817.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Vigst.07G061100.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
rna-TanjilR_10713Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vigun11g120000.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-XM_004487379.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
rna-XM_014638841.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vigan.06G155100.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
rna-TanjilR_19812Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Cr_16486.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
jg44075.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
XM_058877314.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
LR48_mrnaVigan08g129900Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vigun05g230200.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Vigun01g182300.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-TanjilR_03122Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Psat07G0548100-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
LR48_mrnaVigan05g163300Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Psat5g262880.1Pisum sativum Cameor genome v1aPisum sativum
Cr_01383.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Ca_15215Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Ca_07103Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Vigun11g120000.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Vigst.04G231400.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
rna-XM_014640681.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
XM_058884756.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Vum_06G01017.1Vigna umbellata FF25 genome v1.0Vigna umbellata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
PvulFLAVERTChr11.1000626Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
PvulFLAVERTChr01.1001336Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
PvulFLAVERTChr05.787Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Phvul.011G100600.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Phvul.005G117500Phvul.005G117500_Pv_G19833_v2.1Phaseolus vulgarisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Phvul.005G117500.1_Pv_G19833_v2.1Phvul.005G117500.1_Pv_G19833_v2.1Phaseolus vulgarispolypeptide
Phvul.005G117500.1Phvul.005G117500.1_Pv_G19833_v2.1-proteinPhaseolus vulgarispolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.005G117500.1.v2.1.five_prime_UTR.1Phvul.005G117500.1.v2.1.five_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgarisfive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.005G117500.1.v2.1.CDS.1Phvul.005G117500.1.v2.1.CDS.1_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.005G117500.1.v2.1.CDS.2Phvul.005G117500.1.v2.1.CDS.2_Pv_G19833_v2.1Phaseolus vulgarisCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.005G117500.1.v2.1.three_prime_UTR.1Phvul.005G117500.1.v2.1.three_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgaristhree_prime_UTR
Phvul.005G117500.1.v2.1.three_prime_UTR.2Phvul.005G117500.1.v2.1.three_prime_UTR.2_Pv_G19833_v2.1Phaseolus vulgaristhree_prime_UTR


Homology
BLAST of Phvul.005G117500.1 vs. DB:Swiss
Match: FLA17_ARATH (Fasciclin-like arabinogalactan protein 17 OS=Arabidopsis thaliana OX=3702 GN=FLA17 PE=2 SV=1)

HSP 1 Score: 559.296 bits (1440), Expect = 0.000e+0
Identity = 315/467 (67.45%), Postives = 367/467 (78.59%), Query Frame = 1
Query:    1 MGSGIYGASD-LRILCTVVLMVYGLPQALTLRESSPSSPTAQINSNSILVALLDSQYTELAELVEKAMLLEKLEETVATHNITIFAPTNQALDRNLDADFKRFLLQPANLHSLQTLLLSHIIPTQIGSQTL-------IRHVTTLSNHQIRLS--ANLTAVDQARVTHPDVLTRPDGVIHAIDRLLLPRSVEHDFNRRRTLRSISAVKPEGAPEVDPRTHRXXXXXXXXXXXXXXXXXIYDXXXXXXXXXXXXXXXXXXXHHHFNGEKQVKDFIHTLLHYGGYNEMADILVNLTSLAVEMGHLVSEGYILTVLAPNDEAVAKLTTEQLSEPGAPERIMYYHIIPEYQTEESMYNAVRRFGKVRYDTLRLPHKVVAQEADGSVKFGRGDGSAYLFDPDIYTDGRISVQGIDGVLFPIDEEEEAERVKPATRSGQPAAKVVMHRRGKLQETACWMLGAFGQHSRFTTCQ 1371
            M   IYG S  + +     ++++    AL+ +  SPSS + QINSNS+LVALLDS+YTELAELVEKA+LL+ LE+ V  HNITIFAP N+AL+R+LD +FKRFLL+P NL SLQTLL+ HIIP ++GS          ++H  TL N Q+RLS       VD A +  PD LTRPDG+IH I+RLL+PRSV+ DFNRRR+L+SISAV PEGAPEVDPRT+RLKKP  P   GS PAL I  A++PGPSLAPAPAPGPGG  HHF+GE QVKDFIHTLLHYGGYNEMADILVNLTSLA EMG LVSEGY+LTVLAPNDEA+AKLTT+QLSEPGAPE+I+YYHIIPEYQTEESMYN+VRRFGKV++DTLR PHKV A+EADGSVKFG G+ SAYLFDPDIYTDGRISVQGIDGVLFP  EEE  E VK      +P  K+V  RRGKL E AC MLGAFG+ +  + C+
Sbjct:    1 MDRRIYGGSAVIHLFLFFSVLIFSAASALS-KNQSPSSGSGQINSNSVLVALLDSRYTELAELVEKALLLQTLEDAVGRHNITIFAPRNEALERDLDPEFKRFLLEPGNLKSLQTLLMFHIIPNRVGSNQWPSEESGRVKH-HTLGNDQVRLSNGQGKKMVDLAEIIRPDDLTRPDGLIHGIERLLIPRSVQEDFNRRRSLQSISAVLPEGAPEVDPRTNRLKKPAAPVPAGSPPALPIQSAMAPGPSLAPAPAPGPGGKQHHFDGEAQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIVYYHIIPEYQTEESMYNSVRRFGKVKFDTLRFPHKVAAKEADGSVKFGDGEKSAYLFDPDIYTDGRISVQGIDGVLFP-QEEEVVESVK------KPVKKIVQPRRGKLLEVACSMLGAFGKDTYLSKCR 458          
BLAST of Phvul.005G117500.1 vs. DB:Swiss
Match: FLA16_ARATH (Fasciclin-like arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=FLA16 PE=2 SV=1)

HSP 1 Score: 545.043 bits (1403), Expect = 0.000e+0
Identity = 308/423 (72.81%), Postives = 339/423 (80.14%), Query Frame = 1
Query:  118 AQINSNSILVALLDSQYTELAELVEKAMLLEKLEETVATHNITIFAPTNQALDRNLDADFKRFLLQPANLHSLQTLLLSHIIPTQIGSQ---TLIRHVTTLSNHQIRLSA--NLTAVDQARVTHPDVLTRPDGVIHAIDRLLLPRSVEHDFNRRRTLRSISAVKPEGAPEVDPRTHRXXXXXXXXXXXXXXXXXIYDXXXXXXXXXXXXXXXXXXXHHHFNGEKQVKDFIHTLLHYGGYNEMADILVNLTSLAVEMGHLVSEGYILTVLAPNDEAVAKLTTEQLSEPGAPERIMYYHIIPEYQTEESMYNAVRRFGKVRYDTLRLPHKVVAQEADGSVKFGRGDGSAYLFDPDIYTDGRISVQGIDGVLFPIDEEEEAERVKPATRSGQPAAKVVMHRRGKLQETACWMLGAFGQHSRFTTCQ 1371
             QINSNS+LVALLDS YTELAELVEKA+LL+ LEE V  HNITIFAP N AL+RNLD  FK FLL+P NL SLQ+LL+ HI+P +I S    +L  H  TLSN  + L+   N   VD A +  PD + RPDG+IH I+RLL+PRSV+ DFNRRR+LRSISAV PEGAPEVDPRTHRLKKP P    G+ P L IYDA+SPGPSLAPAPAPGPGGP  HFNG+ QVKDFIHTLLHYGGYNEMADILVNLTSLA EMG LVSEGY+LTVLAPNDEA+AKLTT+QLSEPGAPE+IMYYHIIPEYQTEESMYNAVRRFGKV+YD+LR PHKV+AQEADGSVKFG GDGSAYLFDPDIYTDGRISVQGIDGVLFP  EE  A  +KPA        KV   RRGKL E AC M+G     SRF  CQ
Sbjct:   32 GQINSNSVLVALLDSHYTELAELVEKALLLQTLEEAVGKHNITIFAPRNDALERNLDPLFKSFLLEPRNLKSLQSLLMFHILPKRITSPQWPSLSHHHRTLSNDHLHLTVDVNTLKVDSAEIIRPDDVIRPDGIIHGIERLLIPRSVQEDFNRRRSLRSISAVIPEGAPEVDPRTHRLKKPSPAVPAGAPPVLPIYDAMSPGPSLAPAPAPGPGGPRGHFNGDAQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIMYYHIIPEYQTEESMYNAVRRFGKVKYDSLRFPHKVLAQEADGSVKFGHGDGSAYLFDPDIYTDGRISVQGIDGVLFP-KEETPATEIKPAAPV---VKKVSKSRRGKLMEVACRMMG-----SRFIPCQ 445          
BLAST of Phvul.005G117500.1 vs. DB:Swiss
Match: FLA15_ARATH (Fasciclin-like arabinogalactan protein 15 OS=Arabidopsis thaliana OX=3702 GN=FLA15 PE=2 SV=1)

HSP 1 Score: 543.888 bits (1400), Expect = 0.000e+0
Identity = 306/435 (70.34%), Postives = 347/435 (79.77%), Query Frame = 1
Query:   82 LTLRESSPSSP-TAQINSNSILVALLDSQYTELAELVEKAMLLEKLEETVATHNITIFAPTNQALDRNLDADFKRFLLQPANLHSLQTLLLSHIIPTQIGSQTLIRHVT---TLSNHQIRLSANLTAVDQARVTHPDVLTRPDGVIHAIDRLLLPRSVEHDFNRRRTLRSISAVKPEGAPEVDPRTHRXXXXXXXXXXXXXXXXXIYDXXXXXXXXXXXXXXXXXXXHHHFNGEKQVKDFIHTLLHYGGYNEMADILVNLTSLAVEMGHLVSEGYILTVLAPNDEAVAKLTTEQLSEPGAPERIMYYHIIPEYQTEESMYNAVRRFGKVRYDTLRLPHKVVAQEADGSVKFGRGDGSAYLFDPDIYTDGRISVQGIDGVLFPIDEEEEAERVKPATRSGQPAAKVVMH-RRGKLQETACWMLGAFGQHSRFTTCQ 1371
            +++  + P  P + QINSNS+LVALLDS YTELAELVEKA+LL+ LEE V  HNITIFAP N AL++NLD +FK FLLQP NL SLQ+LL+ HI+P +I S      V    TLSN  +  +     V+ A +T PD LTRPDG+IH I+RLL+PRSV+ DFNRRR+LRSI+AV PEGAPEVDPRTHRLKK P P   G+ P L +YDA+SPGPSLAPAPAPGPGGP HHFNGE QVKDFIHTLLHYGGYNEMADILVNLTSLA EMG LVSEGY+LTVLAPNDEA+AKLTT+QLSEPGAPE+IMYYHIIPEYQTEESMYN+VRRFGK+RYD+LR PHKV AQEADGSVKFG GDGSAYLFDPDIYTDGRISVQGIDGVLFP +E+   E+     ++G P  K     RRGKL E AC MLG     S+F TCQ
Sbjct:   15 ISITTALPDKPGSGQINSNSVLVALLDSHYTELAELVEKALLLQTLEEAVGQHNITIFAPRNDALEKNLDPEFKSFLLQPKNLKSLQSLLMFHILPKRITSPQFSSAVVSHRTLSNDHLHFTNG--KVNSAEITKPDDLTRPDGIIHGIERLLIPRSVQEDFNRRRSLRSIAAVLPEGAPEVDPRTHRLKKKPAPIPAGAPPVLPVYDAMSPGPSLAPAPAPGPGGPRHHFNGEAQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIMYYHIIPEYQTEESMYNSVRRFGKIRYDSLRFPHKVEAQEADGSVKFGHGDGSAYLFDPDIYTDGRISVQGIDGVLFP-EEKTPVEK-----KTGVPVVKKAPKPRRGKLMEVACTMLG-----SQFPTCQ 436          
BLAST of Phvul.005G117500.1 vs. DB:Swiss
Match: FLA18_ARATH (Fasciclin-like arabinogalactan protein 18 OS=Arabidopsis thaliana OX=3702 GN=FLA18 PE=2 SV=1)

HSP 1 Score: 532.717 bits (1371), Expect = 0.000e+0
Identity = 307/471 (65.18%), Postives = 352/471 (74.73%), Query Frame = 1
Query:    1 MGSGIYGASDLRILCTVVLMVYGLPQALTLRESSPS-SPTAQINSNSILVALLDSQYTELAELVEKAMLLEKLEETVATHNITIFAPTNQALDRNLDADFKRFLLQPANLHSLQTLLLSHIIPTQIGSQTL-------IRHVTTLSNHQIRLSA-----NLTAVDQARVTHPDVLTRPDGVIHAIDRLLLPRSVEHDFNRRRTLRSISAVKPEGAPEVDPRTHRXXXXXXXXXXXXXX--XXXIYDXXXXXXXXXXXXXXXXXXXHHHFNGEKQVKDFIHTLLHYGGYNEMADILVNLTSLAVEMGHLVSEGYILTVLAPNDEAVAKLTTEQLSEPGAPERIMYYHIIPEYQTEESMYNAVRRFGKVRYDTLRLPHKVVAQEADGSVKFGRGDGSAYLFDPDIYTDGRISVQGIDGVLFPIDEEEEAERVKPATRSGQPAAKVVMHRRGKLQETACWMLGAFGQHSRFTTC 1368
            M   IYG S    + T+    + L  A  L     + + + QINSNS+LVALLDS+YTELAELVEKA+LL+ LE+ V  HNITIFAP N+AL+R+LD DFKRFLLQP NL SLQTLLLSHIIP ++GS          ++HVT   +  + LS          V+ A +T PD LTRPDG+IH I+RLL+PRSV+ DFNRRR LRSISAV PEGAPE+DPRT+RLKK        +     L I  A++PGPSLAPAPAPGPGG H HFNG+ QVKDFIHTLLHYGGYNEMADILVNLTSLA EMG LVSEGY+LTVLAPNDEA+ KLTT+QLSEPGAPE+IMYYHIIPEYQTEESMYN+VRRFGKV+Y+TLR PHKV A+EADGSVKFG GD SAYLFDPDIYTDGRISVQGIDGVLFP ++EEE  +         P  KVV  RRGKL E AC MLGA G+ S  + C
Sbjct:    1 MDRCIYGCS----VITIFFSFFFLLNASALESGHHNITGSGQINSNSVLVALLDSRYTELAELVEKALLLQTLEDAVGRHNITIFAPRNEALERDLDPDFKRFLLQPGNLKSLQTLLLSHIIPKRVGSNQWPEENSGRVKHVTLGHDQVLHLSKLKGTNGKRLVNSAVITRPDDLTRPDGLIHGIERLLIPRSVQEDFNRRRNLRSISAVLPEGAPEIDPRTNRLKKSATAVSVPAGSPPVLPIESAMAPGPSLAPAPAPGPGGAHKHFNGDAQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMGKLTTDQLSEPGAPEQIMYYHIIPEYQTEESMYNSVRRFGKVKYETLRFPHKVGAKEADGSVKFGSGDRSAYLFDPDIYTDGRISVQGIDGVLFPEEKEEETVKKPTG-----PVKKVVQPRRGKLLEVACSMLGAIGKDSYLSRC 462          
BLAST of Phvul.005G117500.1 vs. DB:Swiss
Match: STAB2_MOUSE (Stabilin-2 OS=Mus musculus OX=10090 GN=Stab2 PE=1 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 2.217e-8
Identity = 51/188 (27.13%), Postives = 89/188 (47.34%), Query Frame = 1
Query:   13 IYGASDLRILCTVVLMVYGLPQALTLRESSPSSPTAQINSNSILVALLDSQYTELAELVEKAMLLEKLEETVATHNITIFAPTNQALDRNLDADFKRFLLQPANLHSLQTLLLSHIIP-TQIGSQTLIR--HVTTLSNHQI--------RLSANLTAVDQARVTHPDVLTRPDGVIHAIDRLLLPRSV 543
            +YG+  ++I+   ++   GL   L  R      PT + N    ++ +L  +Y +   L+EK  + + LE+       TIF P+N+AL  N+ A    +LL P     L  L+  HI+  TQ+   TL+   H+ +++N  I        ++ AN  AVD+  V         +G I+ +  +L+P S+
Sbjct:  485 LYGSKIVQIIQGNIVASNGLVHILD-RAMDKIEPTLESNPQQTIMTMLQPRYGKFRSLLEKTNVGQALEKGGIDEPYTIFVPSNEALS-NMTAGVLDYLLSPEGSRKLLELVRYHIVAFTQLEVATLVSTLHIRSMANQIITFNISSKGQILANNVAVDETEV------AAKNGRIYTLTGVLIPPSI 664          
BLAST of Phvul.005G117500.1 vs. DB:Swiss
Match: STAB2_HUMAN (Stabilin-2 OS=Homo sapiens OX=9606 GN=STAB2 PE=1 SV=3)

HSP 1 Score: 60.4622 bits (145), Expect = 2.567e-8
Identity = 43/153 (28.10%), Postives = 75/153 (49.02%), Query Frame = 1
Query:  112 PTAQINSNSILVALLDSQYTELAELVEKAMLLEKLEETVATHNITIFAPTNQALDRNLDADFKRFLLQPANLHSLQTLLLSHIIP-TQIGSQTLIR--HVTTLSNHQIRLSANLTAVDQARVTHPDV------LTRPDGVIHAIDRLLLPRSV 543
            PT + N+   ++ +L  +Y++   L+E+  L   L+E       TIF P N+AL+   D     +LL P     L  L+  HI+P TQ+   TLI   H+ +++N  I+ +      D  ++   DV      +T  +G I+ +  +L+P S+
Sbjct:  510 PTFESNNEQTIMTMLQPRYSKFRSLLEETNLGHALDEDGVGGPYTIFVPNNEALNNMKDGTLD-YLLSPEGSRKLLELVRYHIVPFTQLEVATLISTPHIRSMANQLIQFN----TTDNGQILANDVAMEEIEITAKNGRIYTLTGVLIPPSI 657          
The following BLAST results are available for this feature:
BLAST of Phvul.005G117500.1 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot)
Total hits: 6
Match NameE-valueIdentityDescription
FLA17_ARATH0.000e+067.45Fasciclin-like arabinogalactan protein 17 OS=Arabi... [more]
FLA16_ARATH0.000e+072.81Fasciclin-like arabinogalactan protein 16 OS=Arabi... [more]
FLA15_ARATH0.000e+070.34Fasciclin-like arabinogalactan protein 15 OS=Arabi... [more]
FLA18_ARATH0.000e+065.18Fasciclin-like arabinogalactan protein 18 OS=Arabi... [more]
STAB2_MOUSE2.217e-827.13Stabilin-2 OS=Mus musculus OX=10090 GN=Stab2 PE=1 ... [more]
STAB2_HUMAN2.567e-828.10Stabilin-2 OS=Homo sapiens OX=9606 GN=STAB2 PE=1 S... [more]
back to top
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000782FAS1 domainSMARTSM00554fasc_3coord: 82..179
e-value: 1.1E-13
score: 61.5
coord: 301..406
e-value: 2.0E-14
score: 63.9
IPR000782FAS1 domainPFAMPF02469Fasciclincoord: 54..178
e-value: 3.8E-20
score: 72.4
coord: 299..404
e-value: 7.9E-7
score: 29.3
IPR000782FAS1 domainPROSITEPS50213FAS1coord: 43..176
score: 19.655
IPR000782FAS1 domainPROSITEPS50213FAS1coord: 260..388
score: 10.382
IPR036378FAS1 domain superfamilyGENE3D2.30.180.10coord: 274..407
e-value: 8.1E-7
score: 31.4
IPR036378FAS1 domain superfamilyGENE3D2.30.180.10coord: 45..179
e-value: 5.9E-21
score: 77.0
IPR036378FAS1 domain superfamilySUPERFAMILY82153FAS1 domaincoord: 239..406
IPR036378FAS1 domain superfamilySUPERFAMILY82153FAS1 domaincoord: 45..179
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 192..256

Sequences
The following sequences are available for this feature:

protein sequence of Phvul.005G117500.1_Pv_G19833_v2.1

>Phvul.005G117500.1_Pv_G19833_v2.1 ID=Phvul.005G117500.1_Pv_G19833_v2.1; Name=Phvul.005G117500.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=458bp
MGSGIYGASDLRILCTVVLMVYGLPQALTLRESSPSSPTAQINSNSILVA
LLDSQYTELAELVEKAMLLEKLEETVATHNITIFAPTNQALDRNLDADFK
RFLLQPANLHSLQTLLLSHIIPTQIGSQTLIRHVTTLSNHQIRLSANLTA
VDQARVTHPDVLTRPDGVIHAIDRLLLPRSVEHDFNRRRTLRSISAVKPE
GAPEVDPRTHRLKKPPPPAKPGSSPALSIYDALSPGPSLAPAPAPGPGGP
HHHFNGEKQVKDFIHTLLHYGGYNEMADILVNLTSLAVEMGHLVSEGYIL
TVLAPNDEAVAKLTTEQLSEPGAPERIMYYHIIPEYQTEESMYNAVRRFG
KVRYDTLRLPHKVVAQEADGSVKFGRGDGSAYLFDPDIYTDGRISVQGID
GVLFPIDEEEEAERVKPATRSGQPAAKVVMHRRGKLQETACWMLGAFGQH
SRFTTCQ*
back to top

mRNA from alignment at Chr05:35151153..35154731+

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Phvul.005G117500.1_Pv_G19833_v2.1 ID=Phvul.005G117500.1_Pv_G19833_v2.1; Name=Phvul.005G117500.1; organism=Phaseolus vulgaris; type=mRNA; length=3579bp; location=Sequence derived from: Chr05:35151153..35154731+ (Phaseolus vulgaris
ACACATTCACTTGCCGCCAACTTCCCAATTCCAATTTCACTCCCTTGGGA TTAAAGAGCAAAGGAATCGTACAGTTGGTGCTCCCAGTGAAGTGGTGGTT GGGTTTCTCTCCACCGCAATCTGGCCATGGGTAGCGGCATCTACGGCGCT TCCGACCTCCGCATTTTGTGCACCGTCGTCTTAATGGTGTATGGTTTGCC TCAGGCATTAACGTTGCGAGAGTCTTCTCCGTCGTCACCGACGGCTCAGA TTAATTCGAACTCAATCTTAGTTGCTCTTCTGGACTCGCAGTACACGGAA CTGGCGGAGCTTGTGGAAAAAGCAATGCTGTTGGAGAAACTAGAAGAGAC GGTGGCTACACACAACATAACAATTTTCGCTCCGACCAACCAAGCTTTGG ACCGGAACCTCGACGCTGATTTCAAGCGCTTCCTTCTCCAACCCGCGAAC CTTCACTCCCTCCAAACGCTTCTCCTCTCTCACATCATCCCCACGCAAAT CGGATCCCAAACCCTAATCCGCCACGTCACCACTCTCTCCAACCACCAAA TCCGTCTCTCCGCAAACCTCACCGCCGTCGACCAGGCCCGCGTTACACAC CCGGATGTCCTCACCCGACCCGACGGCGTCATACACGCCATCGACCGCCT CCTCCTCCCTCGCTCCGTCGAGCACGACTTCAACCGCCGCCGCACCCTTC GCTCCATCTCCGCCGTCAAACCCGAGGGAGCCCCGGAGGTCGACCCGAGA ACCCATCGTCTCAAAAAACCTCCTCCGCCTGCGAAGCCTGGCTCCTCTCC GGCTCTTTCGATATACGATGCCTTGTCTCCGGGACCATCCCTTGCTCCGG CGCCGGCGCCGGGGCCTGGTGGACCGCACCACCATTTCAATGGCGAGAAA CAGGTGAAGGATTTCATCCACACACTTCTCCACTACGGTGGATACAACGA GATGGCAGACATTCTCGTGAATCTAACGTCGTTAGCCGTTGAAATGGGTC ATTTAGTGTCTGAGGGTTACATTCTCACCGTTTTGGCTCCGAACGACGAA GCCGTGGCGAAGTTAACGACGGAACAGTTGAGTGAACCGGGTGCGCCGGA GCGGATAATGTACTATCACATAATACCGGAGTACCAGACGGAAGAGAGCA TGTACAATGCGGTTCGAAGGTTCGGGAAGGTTCGTTACGATACTCTACGG TTGCCGCATAAGGTGGTTGCACAGGAGGCTGATGGGTCCGTTAAATTCGG GCGCGGGGACGGGTCGGCGTATTTGTTCGACCCGGACATATACACGGATG GTCGGATCTCGGTTCAGGGGATTGATGGGGTTTTGTTTCCGATTGATGAG GAGGAGGAGGCGGAGCGGGTTAAACCCGCTACCCGGTCGGGTCAACCCGC TGCAAAAGTTGTCATGCACAGGAGAGGTACGGTCTACTGTTGCCTTTGTT GCTTTTTCTTGTGCTTTTCTCCTTATTAGGAAAAAGGGTAGAGGTGATAG CGATGTCTTTGGCTGGCTGAATTTCATTATTTTTCCTTTTTCTTTTTAAA GGGTTTTCTTTTATTAAGTGCCTTGCTTTTGGTTAACTCTGTTTTTGATT GGCTCACGTCGTTGTTTTTGCTAGCTTTTGCTGTATAATTGAATTCGACA ACCCTGTTGAAATTATGACTTGGGTTTAGTTTTGGCCTTGTGCGTTCTAG GTGGGGCTGGAAGAGTTGAAATGTGTTCAGTATGAGGTTGGTTTCTTTTG GGGTAGAAAACAAAATGAAGACATGTCTGTCTAGGATATTTTCAATTGGG CATTTGGTGTCGGGTTAGTGATTATATGTTTGGTTCCAGCCAATATGATT TAATTCACTTTATATGTCACTTAGAATCACGGTTTAATTCCAGCTAATAT GCTTTTAGGTAACTGATTATTTGTTTGGTTCCATCTTCAAATTTTAACGC CTGCTCGAGTTAGTAGTATTCAGGAGGCTCAAAAGTTAACTGTGTTGTTA GAAGGCATGCAACAGTTTGAATGGCAACAGAGACATAATTTTGGATATAG AATTGATTTTAAGTTAAAGCAACTTTAAGGAACTTTGGTGTAACATAAAA ATAACCGAGTTTTACTACTAATTTATTATTAGAATGAAAATATCCATAAA TAAATCACATCCTATCAAAATCAATTATATTAAAAATCTATTTTGCACAC ACTCCCAAATTGTTTGATTCTTGTTAGACAAATGCAGGGATTGGGAATTG GAACTACTTCACGTTATGATGGGAGAACTGTATTATTTTCTAGTTGTTAC ATTTCATGCCATGCTAAACTTTTTTTACTTTTGCCGTTTGCTATATTGTA TGTTTACATGTGTGAGGTGAAGTTTCCGAAAGGTGAAATGGAAATTCTTA AAAGAAATTAAGGTTTTTTTTTGTCTTGACTTTAAATAAGAAAAAGGGTT GAGAAACCCAGTGGCGGGGTTAGTGAATGTATTAGAGTTTTCTGAATTGC CTTTGATGTGACTTTTTGGAGTGGAGTAAAACGTAGCTGGTGCTGATGAA GGTGTAAAGGAAAATGTGGAATGTTGATAAAATTGGCTTGCGTAGCTTTG GCATCTTTCCAGTCAAATCAATGGCCATGTGCTGTGACCGTGTACATTTT CCTATCTTTCCTTTTAAGAAAAAAATGCTTGTGACTCTGAGCTCGACCTA CATCCTTAATATATCAAAATGTAAATTCTGTTGTCAAATGATTCTTTTGT TTTTCTGGGGGTATGTTATTTATACATCTCTTTTCACATGCTAATCCGAA TAAAGCAACTGTTTATTTAAGGTTTGGTTATTATTTTTGTCGGTCATACC TTGTAACTGATTTCGTGAAATGTCACTTGCAGGAAAATTACAGGAAACAG CATGCTGGATGCTCGGAGCCTTTGGACAACATTCTAGATTCACCACTTGC CAATGAAGAAGCCCACTTTTTTCTGGCTTTCCCGAATCCTGAAAAGAATT ATGTGAGATTACAACTTATTATCTCACTAGATTAATTATCTTTTCAATAG GACCCCATTTGTTGGAATGGTGATAGCATATATAATTGGACAAACTATTT GTTTCTCTTTATTATTTCCCTAATCACAATTGTGCTGACATTTTAGTTTT CTTTCTGCATATGTCTATTTACACACTGCTTGCACATGCTTTGATGCAGA TCCAGTGGAAATCTCTTCAATGTAAAAAGTCAAAAAGGAAGGCCATGTTT TGCTTGAATGGGATGTTGCCAGCTGCTTTGGGTGTGATTTTCCCACATTT TTGTTTTGCTCTTTTTTGTTCACTATTTTCTTTTGTGCATTTGGGTCCTA GACGTCTTCATACCATATAGTGCATATATGTACTTAGATGCAGCTACTTC AATTTCATAGTTGGTTTGTTGTGTTGCTTGGATGACAAAGTTTTGTGTAA CTAATTAGGGAATCCCTGTTAGACATGTGCCCTTTCAATAAGTAATTCCA CGGAAGAAATGGAAATACAACAATAAAATGATTCTTTCTTTACTGTAATA TGACATTCCTTGCCTGGCAACTGATATTT
back to top

Coding sequence (CDS) from alignment at Chr05:35151153..35154731+

>Phvul.005G117500.1_Pv_G19833_v2.1 ID=Phvul.005G117500.1_Pv_G19833_v2.1; Name=Phvul.005G117500.1; organism=Phaseolus vulgaris; type=CDS; length=1374bp; location=Sequence derived from: Chr05:35151153..35154731+ (Phaseolus vulgaris
ATGGGTAGCGGCATCTACGGCGCTTCCGACCTCCGCATTTTGTGCACCGT
CGTCTTAATGGTGTATGGTTTGCCTCAGGCATTAACGTTGCGAGAGTCTT
CTCCGTCGTCACCGACGGCTCAGATTAATTCGAACTCAATCTTAGTTGCT
CTTCTGGACTCGCAGTACACGGAACTGGCGGAGCTTGTGGAAAAAGCAAT
GCTGTTGGAGAAACTAGAAGAGACGGTGGCTACACACAACATAACAATTT
TCGCTCCGACCAACCAAGCTTTGGACCGGAACCTCGACGCTGATTTCAAG
CGCTTCCTTCTCCAACCCGCGAACCTTCACTCCCTCCAAACGCTTCTCCT
CTCTCACATCATCCCCACGCAAATCGGATCCCAAACCCTAATCCGCCACG
TCACCACTCTCTCCAACCACCAAATCCGTCTCTCCGCAAACCTCACCGCC
GTCGACCAGGCCCGCGTTACACACCCGGATGTCCTCACCCGACCCGACGG
CGTCATACACGCCATCGACCGCCTCCTCCTCCCTCGCTCCGTCGAGCACG
ACTTCAACCGCCGCCGCACCCTTCGCTCCATCTCCGCCGTCAAACCCGAG
GGAGCCCCGGAGGTCGACCCGAGAACCCATCGTCTCAAAAAACCTCCTCC
GCCTGCGAAGCCTGGCTCCTCTCCGGCTCTTTCGATATACGATGCCTTGT
CTCCGGGACCATCCCTTGCTCCGGCGCCGGCGCCGGGGCCTGGTGGACCG
CACCACCATTTCAATGGCGAGAAACAGGTGAAGGATTTCATCCACACACT
TCTCCACTACGGTGGATACAACGAGATGGCAGACATTCTCGTGAATCTAA
CGTCGTTAGCCGTTGAAATGGGTCATTTAGTGTCTGAGGGTTACATTCTC
ACCGTTTTGGCTCCGAACGACGAAGCCGTGGCGAAGTTAACGACGGAACA
GTTGAGTGAACCGGGTGCGCCGGAGCGGATAATGTACTATCACATAATAC
CGGAGTACCAGACGGAAGAGAGCATGTACAATGCGGTTCGAAGGTTCGGG
AAGGTTCGTTACGATACTCTACGGTTGCCGCATAAGGTGGTTGCACAGGA
GGCTGATGGGTCCGTTAAATTCGGGCGCGGGGACGGGTCGGCGTATTTGT
TCGACCCGGACATATACACGGATGGTCGGATCTCGGTTCAGGGGATTGAT
GGGGTTTTGTTTCCGATTGATGAGGAGGAGGAGGCGGAGCGGGTTAAACC
CGCTACCCGGTCGGGTCAACCCGCTGCAAAAGTTGTCATGCACAGGAGAG
GAAAATTACAGGAAACAGCATGCTGGATGCTCGGAGCCTTTGGACAACAT
TCTAGATTCACCACTTGCCAATGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000782FAS1_domain
IPR036378FAS1_dom_sf