Phvul.005G123700.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Phvul.005G123700.1 vs. DB:Swiss
Match: R10A_ORYSJ (60S ribosomal protein L10a OS=Oryza sativa subsp. japonica OX=39947 GN=RPL10A PE=1 SV=1) HSP 1 Score: 365.925 bits (938), Expect = 3.611e-129 Identity = 193/216 (89.35%), Postives = 207/216 (95.83%), Query Frame = 1 Query: 1 MSKLQSDALREAISGIMGDSKEKNRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLDYMDVEXXXXXXXXXXXXXXXXXXYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF 648 MSKLQS+ L+EAIS ++G+SKEK R F ET+ELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMK+CMLGDAQHVEEAEKIGLDYMDVEALKK+NKNKKLVKKLAKKYHAFLASEA+IKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKA VKFQLKKVLCMGVAVGN+SM+EKQI QN+Q+SVNFLVSLLKKNWQNVRCLY+KSTMGK RVF Sbjct: 1 MSKLQSEVLKEAISQVVGESKEKGRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIQQNIQMSVNFLVSLLKKNWQNVRCLYIKSTMGKPIRVF 216
BLAST of Phvul.005G123700.1 vs. DB:Swiss
Match: R10A_ORYSI (60S ribosomal protein L10a OS=Oryza sativa subsp. indica OX=39946 GN=RPL10A PE=3 SV=1) HSP 1 Score: 365.925 bits (938), Expect = 3.611e-129 Identity = 193/216 (89.35%), Postives = 207/216 (95.83%), Query Frame = 1 Query: 1 MSKLQSDALREAISGIMGDSKEKNRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLDYMDVEXXXXXXXXXXXXXXXXXXYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF 648 MSKLQS+ L+EAIS ++G+SKEK R F ET+ELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMK+CMLGDAQHVEEAEKIGLDYMDVEALKK+NKNKKLVKKLAKKYHAFLASEA+IKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKA VKFQLKKVLCMGVAVGN+SM+EKQI QN+Q+SVNFLVSLLKKNWQNVRCLY+KSTMGK RVF Sbjct: 1 MSKLQSEVLKEAISQVVGESKEKGRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIQQNIQMSVNFLVSLLKKNWQNVRCLYIKSTMGKPIRVF 216
BLAST of Phvul.005G123700.1 vs. DB:Swiss
Match: R10A1_ARATH (60S ribosomal protein L10a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL10AA PE=1 SV=1) HSP 1 Score: 362.073 bits (928), Expect = 9.792e-128 Identity = 193/216 (89.35%), Postives = 206/216 (95.37%), Query Frame = 1 Query: 1 MSKLQSDALREAISGIMGDSKEKNRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLDYMDVEXXXXXXXXXXXXXXXXXXYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF 648 MSKLQS+A+REAI+ I G S+ K RNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEK+GL+ MDVE+LKKLNKNKKLVKKLAKKYHAFLASE+VIKQIPRLLGPGLNKAGKFPTLV+HQESLESKVNETKA VKFQLKKVLCMGVAVGN+SM+EKQIFQNVQ+SVNFLVSLLKKNWQNVRCLYLKSTMG R+F Sbjct: 1 MSKLQSEAVREAITTITGKSEAKKRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKMGLENMDVESLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPQRIF 216
BLAST of Phvul.005G123700.1 vs. DB:Swiss
Match: R10A2_ARATH (60S ribosomal protein L10a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL10AB PE=1 SV=1) HSP 1 Score: 360.147 bits (923), Expect = 5.977e-127 Identity = 191/216 (88.43%), Postives = 205/216 (94.91%), Query Frame = 1 Query: 1 MSKLQSDALREAISGIMGDSKEKNRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLDYMDVEXXXXXXXXXXXXXXXXXXYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF 648 MSKLQS+A+REAI+ I G S+EK RNFVET+ELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEK+GL MDVEALKKLNKNKKLVKKLAK YHAFLASE+VIKQIPRLLGPGLNKAGKFPTLV+HQESLE+KVNETKA VKFQLKKVLCMGVAVGN+SM+EKQ+FQNVQ+SVNFLVSLLKKNWQNVRCLYLKSTMG R+F Sbjct: 1 MSKLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKMGLSNMDVEALKKLNKNKKLVKKLAKSYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQLFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPQRIF 216
BLAST of Phvul.005G123700.1 vs. DB:Swiss
Match: R10A3_ARATH (60S ribosomal protein L10a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL10AC PE=1 SV=1) HSP 1 Score: 355.525 bits (911), Expect = 5.249e-125 Identity = 194/217 (89.40%), Postives = 205/217 (94.47%), Query Frame = 1 Query: 1 MSKLQSDALREAISGIMGDSKE-KNRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLDYMDVEXXXXXXXXXXXXXXXXXXYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF 648 MSKLQS+A+REAIS I+ KE K RNF ETIELQIGLKNYDPQKDKRFSGSVKLPH+PRPKMKICMLGDAQHVEEAEKIGL+ MDVEALKKLNKNKKLVKKLAKK+HAFLASE+VIKQIPRLLGPGLNKAGKFPTLV+HQESLESKVNETKA VKFQLKKVLCMGVAVGN+SM+EKQIFQNVQ+SVNFLVSLLKKNWQNVRCLYLKSTMG RVF Sbjct: 1 MSKLQSEAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPRPKMKICMLGDAQHVEEAEKIGLESMDVEALKKLNKNKKLVKKLAKKFHAFLASESVIKQIPRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPNRVF 217
BLAST of Phvul.005G123700.1 vs. DB:Swiss
Match: R10AB_DROME (60S ribosomal protein L10a-2 OS=Drosophila melanogaster OX=7227 GN=RpL10Ab PE=1 SV=2) HSP 1 Score: 273.478 bits (698), Expect = 1.437e-92 Identity = 145/215 (67.44%), Postives = 179/215 (83.26%), Query Frame = 1 Query: 4 SKLQSDALREAISGIMGDSKEKNRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLDYMDVEXXXXXXXXXXXXXXXXXXYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF 648 SK+ D L E ++G++ S +K R F+ET+ELQIGLKNYDPQKDKRFSG+VKL HIPRPKMK+C+LGD QH +EA+ +D+MD EALKKLNKNKKLVKKLAK Y AFLASE++IKQIPRLLGPGLNKAGKFP L++HQES+ K+ E K+ +KFQ+KKVLC+ VAVG+V M ++ QNV LS+NFLVSLLKKNWQNVR L++KS+MG R++ Sbjct: 3 SKVSRDTLYEGVNGLLEASAKKKRGFLETVELQIGLKNYDPQKDKRFSGTVKLKHIPRPKMKVCILGDQQHCDEAKANNVDFMDAEALKKLNKNKKLVKKLAKSYDAFLASESLIKQIPRLLGPGLNKAGKFPALLSHQESMIGKIEEVKSTIKFQMKKVLCLSVAVGHVGMKSDELAQNVNLSINFLVSLLKKNWQNVRSLHVKSSMGPPQRLY 217
BLAST of Phvul.005G123700.1 vs. DB:Swiss
Match: RL10A_SPOFR (60S ribosomal protein L10a OS=Spodoptera frugiperda OX=7108 GN=RpL10A PE=2 SV=1) HSP 1 Score: 270.011 bits (689), Expect = 2.786e-91 Identity = 144/215 (66.98%), Postives = 181/215 (84.19%), Query Frame = 1 Query: 4 SKLQSDALREAISGIMGDSKEKNRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLDYMDVEXXXXXXXXXXXXXXXXXXYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF 648 SK+ D L E ++ ++ SK+K RNF+ET+ELQIGLKNYDPQKDKRFSG+VKL +IPRPKM++C+LGD QH +EA+ + + MD EALKKLNKNKKLVKKLAKKY AFLASE++IKQIPRLLGPGLNKAGKFP L++HQES+ K++E KA +KFQ+KKVLC+ VAVG+V M ++ QNV LS+NFLVSLLKK+WQNVR L++KSTMG +++ Sbjct: 3 SKVSRDTLYECVNAVLQASKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAKSLTVPCMDAEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKATIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPPKLY 217
BLAST of Phvul.005G123700.1 vs. DB:Swiss
Match: RL10A_DANRE (60S ribosomal protein L10a OS=Danio rerio OX=7955 GN=rpl10a PE=2 SV=1) HSP 1 Score: 268.47 bits (685), Expect = 1.142e-90 Identity = 143/216 (66.20%), Postives = 178/216 (82.41%), Query Frame = 1 Query: 1 MSKLQSDALREAISGIMGDSKEKNRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLDYMDVEXXXXXXXXXXXXXXXXXXYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF 648 MSK+ D L EA+ + S+ K R F+ET+ELQI LKNYDPQKDKRFSG+V+L PRPK +C+LGD QH +EA+ L +MD+EALKKLNKNKKLVKKLAKKY AFLASE++IKQIPR+LGPGLNKAGKFP+L+TH E+L +KV+E K+ +KFQ+KKVLC+ VAVG+V M E+++ N+ L+VNFLVSLLKKNWQNVR LY+KSTMGK R++ Sbjct: 1 MSKVSRDTLYEAVKEVQAGSRRKKRKFLETVELQISLKNYDPQKDKRFSGTVRLKTTPRPKFSVCVLGDQQHCDEAKAAELPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNENLGTKVDEVKSTIKFQMKKVLCLAVAVGHVKMSEEELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY 216
BLAST of Phvul.005G123700.1 vs. DB:Swiss
Match: RL10A_XENLA (60S ribosomal protein L10a OS=Xenopus laevis OX=8355 GN=rpl10a PE=2 SV=1) HSP 1 Score: 268.085 bits (684), Expect = 1.751e-90 Identity = 142/215 (66.05%), Postives = 180/215 (83.72%), Query Frame = 1 Query: 4 SKLQSDALREAISGIMGDSKEKNRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLDYMDVEXXXXXXXXXXXXXXXXXXYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF 648 SK+ D L EA+ ++ SK+K R F+ET+ELQI LKNYDPQKDKRFSG+V+L PRPK +C+LGD QH +EA+ + L +MD+EALKKLNKNKKLVKKLAKKY AFLASE++IKQIPR+LGPGLNKAGKFP+L+TH E+L +KV+E K+ +KFQ+KKVLC+ VAVG+V + E+++ N+ LS+NFLVSLLKKNWQNVR LY+KSTMGK R++ Sbjct: 3 SKVSRDTLYEAVREVLQGSKKKKRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPKFSLCVLGDQQHCDEAKAVDLPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNENLVAKVDEVKSTIKFQMKKVLCLAVAVGHVKLTEEELVYNIHLSINFLVSLLKKNWQNVRALYIKSTMGKPQRLY 217
BLAST of Phvul.005G123700.1 vs. DB:Swiss
Match: RL10A_CAEEL (60S ribosomal protein L10a OS=Caenorhabditis elegans OX=6239 GN=rpl-1 PE=3 SV=1) HSP 1 Score: 265.003 bits (676), Expect = 2.973e-89 Identity = 139/216 (64.35%), Postives = 175/216 (81.02%), Query Frame = 1 Query: 1 MSKLQSDALREAISGIMGDSKEKNRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLDYMDVEXXXXXXXXXXXXXXXXXXYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF 648 MSK+ ++L EAI+ ++ S EK R F ETIELQIGLKNYDPQKDKRFSGS++L HIPRP MK+C+ GD H++EA + M + LKKLNK KKL+KKLAK Y AF+ASE++IKQIPR+LGPGLNKAGKFP++VTH ESL+SK +E +A VKFQ+KKVLC+ VAVG+V + ++++ N+ LS+NFLVSLLKKNWQNVR L +KSTMGK RV+ Sbjct: 1 MSKVSRESLNEAIAEVLKGSSEKPRKFRETIELQIGLKNYDPQKDKRFSGSIRLKHIPRPNMKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEELVSNISLSINFLVSLLKKNWQNVRSLNIKSTMGKPQRVY 216 The following BLAST results are available for this feature:
BLAST of Phvul.005G123700.1 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
Sequences
The
following sequences are available for this feature:
protein sequence of Phvul.005G123700.1_Pv_G19833_v2.1 >Phvul.005G123700.1_Pv_G19833_v2.1 ID=Phvul.005G123700.1_Pv_G19833_v2.1; Name=Phvul.005G123700.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=217bpback to top mRNA from alignment at Chr05:36074164..36076099- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Phvul.005G123700.1_Pv_G19833_v2.1 ID=Phvul.005G123700.1_Pv_G19833_v2.1; Name=Phvul.005G123700.1; organism=Phaseolus vulgaris; type=mRNA; length=1936bp; location=Sequence derived from: Chr05:36074164..36076099- (Phaseolus vulgarisback to top Coding sequence (CDS) from alignment at Chr05:36074164..36076099- >Phvul.005G123700.1_Pv_G19833_v2.1 ID=Phvul.005G123700.1_Pv_G19833_v2.1; Name=Phvul.005G123700.1; organism=Phaseolus vulgaris; type=CDS; length=651bp; location=Sequence derived from: Chr05:36074164..36076099- (Phaseolus vulgarisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
|