Phvul.005G123700.1

Transcript Overview
NamePhvul.005G123700.1
Unique NamePhvul.005G123700.1_Pv_G19833_v2.1
TypemRNA
OrganismPhaseolus vulgaris (Common bean)
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr05supercontigChr05:36074164..36076099 -Phaseolus vulgaris G19833 genome v2.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Phaseolus vulgaris G19833 genome v2.12019-09-17
InterProScan: Phaseolus vulgaris G19833 genome v2.12019-10-18
BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot2019-10-18
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
pvpvL016Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvpvL108Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pspvL467Pisum sativum Cameor genome v1aPisum sativum
pspvL477Pisum sativum Cameor genome v1aPisum sativum
pspvL832Pisum sativum Cameor genome v1aPisum sativum
pvvuR472Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pvvuR481Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pvvuR493Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caipvL0052Cicer arietinum ICC 4958 genome v2Cicer arietinum
caipvL0289Cicer arietinum ICC 4958 genome v2Cicer arietinum
crpvL075Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
capvL043Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
crpvL274Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
capvL233Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
crpvL758Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
capvL621Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccpvL0908Cajanus cajan Asha genome v1.0Cajanus cajan
ccpvL1032Cajanus cajan Asha genome v1.0Cajanus cajan
ccpvL1033Cajanus cajan Asha genome v1.0Cajanus cajan
ccpvL1113Cajanus cajan Asha genome v1.0Cajanus cajan
anpvL0150Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0334Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0665Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0780Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL1030Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL1040Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL1168Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL1224Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL1302Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL1378Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
aspvL156Vigna angularis Jingnong 6 genome v1.1Vigna angularis
aspvL533Vigna angularis Jingnong 6 genome v1.1Vigna angularis
aspvL691Vigna angularis Jingnong 6 genome v1.1Vigna angularis
pvzwsR469Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvzwsR483Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvzwsR485Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvvfhR481Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvvfhR508Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvvfhR523Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvvfhR534Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvtifR478Vicia faba cv. Tiffany genome v1.0Vicia faba
pvtifR505Vicia faba cv. Tiffany genome v1.0Vicia faba
pvtifR520Vicia faba cv. Tiffany genome v1.0Vicia faba
pvtifR529Vicia faba cv. Tiffany genome v1.0Vicia faba
pvvrvR448Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvrvR455Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvrvR457Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvuaR417Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvuaR429Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvssR535Vicia sativa cv. Studenica genome v1.0Vicia sativa
pvvssR556Vicia sativa cv. Studenica genome v1.0Vicia sativa
pvvssR582Vicia sativa cv. Studenica genome v1.0Vicia sativa
pvvssR599Vicia sativa cv. Studenica genome v1.0Vicia sativa
canpvL037Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canpvL604Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjpvL090Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjpvL505Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjpvL669Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carpvL053Cicer arietinum
carpvL223Cicer arietinum
carpvL598Cicer arietinum
ccapvL124Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapvL289Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapvL379Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapvL482Cajanus cajan cv. Asha genome v2.0Cajanus cajan
pvvumR534Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvumR537Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvumR558Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvvaR516Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvvaR517Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvvaR563Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvasR531Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvasR535Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvasR559Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvstR532Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvvstR536Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvvstR561Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvpvfR429Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR444Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR457Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvvunR444Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
pvvunR456Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
rna-TanjilR_24144Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-XM_004487438.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Cc_v2.0_23761.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
rna-KK1_034637Cajanus cajan Asha genome v1.0Cajanus cajan
Vigst.07G056100.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Vum_07G00598.1Vigna umbellata FF25 genome v1.0Vigna umbellata
rna-TanjilR_28579Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vigan.07G074200.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Psat05G0721000-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Ca_00699.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
evm.model.Chr05.2240Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vigun05g236000.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Va05G047860.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vigun05g236000.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
jg44195.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Cr_01343.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
LR48_mrnaVigan05g167900Vigna angularis Jingnong 6 genome v1.1Vigna angularis
XM_058923715.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
rna-TanjilR_01311Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-XM_014641499.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Ca_07060Cicer arietinum CDC Frontier genome v1.0Cicer arietinum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
PvulFLAVERTChr05.1000914Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Phvul.005G123700Phvul.005G123700_Pv_G19833_v2.1Phaseolus vulgarisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Phvul.005G123700.1Phvul.005G123700.1_Pv_G19833_v2.1-proteinPhaseolus vulgarispolypeptide
Phvul.005G123700.1_Pv_G19833_v2.1Phvul.005G123700.1_Pv_G19833_v2.1Phaseolus vulgarispolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.005G123700.1.v2.1.CDS.5Phvul.005G123700.1.v2.1.CDS.5_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.005G123700.1.v2.1.CDS.4Phvul.005G123700.1.v2.1.CDS.4_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.005G123700.1.v2.1.CDS.3Phvul.005G123700.1.v2.1.CDS.3_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.005G123700.1.v2.1.CDS.2Phvul.005G123700.1.v2.1.CDS.2_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.005G123700.1.v2.1.CDS.1Phvul.005G123700.1.v2.1.CDS.1_Pv_G19833_v2.1Phaseolus vulgarisCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.005G123700.1.v2.1.three_prime_UTR.1Phvul.005G123700.1.v2.1.three_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgaristhree_prime_UTR


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.005G123700.1.v2.1.five_prime_UTR.1Phvul.005G123700.1.v2.1.five_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgarisfive_prime_UTR


Homology
BLAST of Phvul.005G123700.1 vs. DB:Swiss
Match: R10A_ORYSJ (60S ribosomal protein L10a OS=Oryza sativa subsp. japonica OX=39947 GN=RPL10A PE=1 SV=1)

HSP 1 Score: 365.925 bits (938), Expect = 3.611e-129
Identity = 193/216 (89.35%), Postives = 207/216 (95.83%), Query Frame = 1
Query:    1 MSKLQSDALREAISGIMGDSKEKNRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLDYMDVEXXXXXXXXXXXXXXXXXXYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF 648
            MSKLQS+ L+EAIS ++G+SKEK R F ET+ELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMK+CMLGDAQHVEEAEKIGLDYMDVEALKK+NKNKKLVKKLAKKYHAFLASEA+IKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKA VKFQLKKVLCMGVAVGN+SM+EKQI QN+Q+SVNFLVSLLKKNWQNVRCLY+KSTMGK  RVF
Sbjct:    1 MSKLQSEVLKEAISQVVGESKEKGRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIQQNIQMSVNFLVSLLKKNWQNVRCLYIKSTMGKPIRVF 216          
BLAST of Phvul.005G123700.1 vs. DB:Swiss
Match: R10A_ORYSI (60S ribosomal protein L10a OS=Oryza sativa subsp. indica OX=39946 GN=RPL10A PE=3 SV=1)

HSP 1 Score: 365.925 bits (938), Expect = 3.611e-129
Identity = 193/216 (89.35%), Postives = 207/216 (95.83%), Query Frame = 1
Query:    1 MSKLQSDALREAISGIMGDSKEKNRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLDYMDVEXXXXXXXXXXXXXXXXXXYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF 648
            MSKLQS+ L+EAIS ++G+SKEK R F ET+ELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMK+CMLGDAQHVEEAEKIGLDYMDVEALKK+NKNKKLVKKLAKKYHAFLASEA+IKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKA VKFQLKKVLCMGVAVGN+SM+EKQI QN+Q+SVNFLVSLLKKNWQNVRCLY+KSTMGK  RVF
Sbjct:    1 MSKLQSEVLKEAISQVVGESKEKGRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIQQNIQMSVNFLVSLLKKNWQNVRCLYIKSTMGKPIRVF 216          
BLAST of Phvul.005G123700.1 vs. DB:Swiss
Match: R10A1_ARATH (60S ribosomal protein L10a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL10AA PE=1 SV=1)

HSP 1 Score: 362.073 bits (928), Expect = 9.792e-128
Identity = 193/216 (89.35%), Postives = 206/216 (95.37%), Query Frame = 1
Query:    1 MSKLQSDALREAISGIMGDSKEKNRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLDYMDVEXXXXXXXXXXXXXXXXXXYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF 648
            MSKLQS+A+REAI+ I G S+ K RNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEK+GL+ MDVE+LKKLNKNKKLVKKLAKKYHAFLASE+VIKQIPRLLGPGLNKAGKFPTLV+HQESLESKVNETKA VKFQLKKVLCMGVAVGN+SM+EKQIFQNVQ+SVNFLVSLLKKNWQNVRCLYLKSTMG   R+F
Sbjct:    1 MSKLQSEAVREAITTITGKSEAKKRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKMGLENMDVESLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPQRIF 216          
BLAST of Phvul.005G123700.1 vs. DB:Swiss
Match: R10A2_ARATH (60S ribosomal protein L10a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL10AB PE=1 SV=1)

HSP 1 Score: 360.147 bits (923), Expect = 5.977e-127
Identity = 191/216 (88.43%), Postives = 205/216 (94.91%), Query Frame = 1
Query:    1 MSKLQSDALREAISGIMGDSKEKNRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLDYMDVEXXXXXXXXXXXXXXXXXXYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF 648
            MSKLQS+A+REAI+ I G S+EK RNFVET+ELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEK+GL  MDVEALKKLNKNKKLVKKLAK YHAFLASE+VIKQIPRLLGPGLNKAGKFPTLV+HQESLE+KVNETKA VKFQLKKVLCMGVAVGN+SM+EKQ+FQNVQ+SVNFLVSLLKKNWQNVRCLYLKSTMG   R+F
Sbjct:    1 MSKLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKMGLSNMDVEALKKLNKNKKLVKKLAKSYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQLFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPQRIF 216          
BLAST of Phvul.005G123700.1 vs. DB:Swiss
Match: R10A3_ARATH (60S ribosomal protein L10a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL10AC PE=1 SV=1)

HSP 1 Score: 355.525 bits (911), Expect = 5.249e-125
Identity = 194/217 (89.40%), Postives = 205/217 (94.47%), Query Frame = 1
Query:    1 MSKLQSDALREAISGIMGDSKE-KNRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLDYMDVEXXXXXXXXXXXXXXXXXXYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF 648
            MSKLQS+A+REAIS I+   KE K RNF ETIELQIGLKNYDPQKDKRFSGSVKLPH+PRPKMKICMLGDAQHVEEAEKIGL+ MDVEALKKLNKNKKLVKKLAKK+HAFLASE+VIKQIPRLLGPGLNKAGKFPTLV+HQESLESKVNETKA VKFQLKKVLCMGVAVGN+SM+EKQIFQNVQ+SVNFLVSLLKKNWQNVRCLYLKSTMG   RVF
Sbjct:    1 MSKLQSEAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPRPKMKICMLGDAQHVEEAEKIGLESMDVEALKKLNKNKKLVKKLAKKFHAFLASESVIKQIPRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPNRVF 217          
BLAST of Phvul.005G123700.1 vs. DB:Swiss
Match: R10AB_DROME (60S ribosomal protein L10a-2 OS=Drosophila melanogaster OX=7227 GN=RpL10Ab PE=1 SV=2)

HSP 1 Score: 273.478 bits (698), Expect = 1.437e-92
Identity = 145/215 (67.44%), Postives = 179/215 (83.26%), Query Frame = 1
Query:    4 SKLQSDALREAISGIMGDSKEKNRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLDYMDVEXXXXXXXXXXXXXXXXXXYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF 648
            SK+  D L E ++G++  S +K R F+ET+ELQIGLKNYDPQKDKRFSG+VKL HIPRPKMK+C+LGD QH +EA+   +D+MD EALKKLNKNKKLVKKLAK Y AFLASE++IKQIPRLLGPGLNKAGKFP L++HQES+  K+ E K+ +KFQ+KKVLC+ VAVG+V M   ++ QNV LS+NFLVSLLKKNWQNVR L++KS+MG   R++
Sbjct:    3 SKVSRDTLYEGVNGLLEASAKKKRGFLETVELQIGLKNYDPQKDKRFSGTVKLKHIPRPKMKVCILGDQQHCDEAKANNVDFMDAEALKKLNKNKKLVKKLAKSYDAFLASESLIKQIPRLLGPGLNKAGKFPALLSHQESMIGKIEEVKSTIKFQMKKVLCLSVAVGHVGMKSDELAQNVNLSINFLVSLLKKNWQNVRSLHVKSSMGPPQRLY 217          
BLAST of Phvul.005G123700.1 vs. DB:Swiss
Match: RL10A_SPOFR (60S ribosomal protein L10a OS=Spodoptera frugiperda OX=7108 GN=RpL10A PE=2 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 2.786e-91
Identity = 144/215 (66.98%), Postives = 181/215 (84.19%), Query Frame = 1
Query:    4 SKLQSDALREAISGIMGDSKEKNRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLDYMDVEXXXXXXXXXXXXXXXXXXYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF 648
            SK+  D L E ++ ++  SK+K RNF+ET+ELQIGLKNYDPQKDKRFSG+VKL +IPRPKM++C+LGD QH +EA+ + +  MD EALKKLNKNKKLVKKLAKKY AFLASE++IKQIPRLLGPGLNKAGKFP L++HQES+  K++E KA +KFQ+KKVLC+ VAVG+V M   ++ QNV LS+NFLVSLLKK+WQNVR L++KSTMG   +++
Sbjct:    3 SKVSRDTLYECVNAVLQASKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAKSLTVPCMDAEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKATIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPPKLY 217          
BLAST of Phvul.005G123700.1 vs. DB:Swiss
Match: RL10A_DANRE (60S ribosomal protein L10a OS=Danio rerio OX=7955 GN=rpl10a PE=2 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 1.142e-90
Identity = 143/216 (66.20%), Postives = 178/216 (82.41%), Query Frame = 1
Query:    1 MSKLQSDALREAISGIMGDSKEKNRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLDYMDVEXXXXXXXXXXXXXXXXXXYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF 648
            MSK+  D L EA+  +   S+ K R F+ET+ELQI LKNYDPQKDKRFSG+V+L   PRPK  +C+LGD QH +EA+   L +MD+EALKKLNKNKKLVKKLAKKY AFLASE++IKQIPR+LGPGLNKAGKFP+L+TH E+L +KV+E K+ +KFQ+KKVLC+ VAVG+V M E+++  N+ L+VNFLVSLLKKNWQNVR LY+KSTMGK  R++
Sbjct:    1 MSKVSRDTLYEAVKEVQAGSRRKKRKFLETVELQISLKNYDPQKDKRFSGTVRLKTTPRPKFSVCVLGDQQHCDEAKAAELPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNENLGTKVDEVKSTIKFQMKKVLCLAVAVGHVKMSEEELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY 216          
BLAST of Phvul.005G123700.1 vs. DB:Swiss
Match: RL10A_XENLA (60S ribosomal protein L10a OS=Xenopus laevis OX=8355 GN=rpl10a PE=2 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 1.751e-90
Identity = 142/215 (66.05%), Postives = 180/215 (83.72%), Query Frame = 1
Query:    4 SKLQSDALREAISGIMGDSKEKNRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLDYMDVEXXXXXXXXXXXXXXXXXXYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF 648
            SK+  D L EA+  ++  SK+K R F+ET+ELQI LKNYDPQKDKRFSG+V+L   PRPK  +C+LGD QH +EA+ + L +MD+EALKKLNKNKKLVKKLAKKY AFLASE++IKQIPR+LGPGLNKAGKFP+L+TH E+L +KV+E K+ +KFQ+KKVLC+ VAVG+V + E+++  N+ LS+NFLVSLLKKNWQNVR LY+KSTMGK  R++
Sbjct:    3 SKVSRDTLYEAVREVLQGSKKKKRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPKFSLCVLGDQQHCDEAKAVDLPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNENLVAKVDEVKSTIKFQMKKVLCLAVAVGHVKLTEEELVYNIHLSINFLVSLLKKNWQNVRALYIKSTMGKPQRLY 217          
BLAST of Phvul.005G123700.1 vs. DB:Swiss
Match: RL10A_CAEEL (60S ribosomal protein L10a OS=Caenorhabditis elegans OX=6239 GN=rpl-1 PE=3 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 2.973e-89
Identity = 139/216 (64.35%), Postives = 175/216 (81.02%), Query Frame = 1
Query:    1 MSKLQSDALREAISGIMGDSKEKNRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLDYMDVEXXXXXXXXXXXXXXXXXXYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF 648
            MSK+  ++L EAI+ ++  S EK R F ETIELQIGLKNYDPQKDKRFSGS++L HIPRP MK+C+ GD  H++EA    +  M  + LKKLNK KKL+KKLAK Y AF+ASE++IKQIPR+LGPGLNKAGKFP++VTH ESL+SK +E +A VKFQ+KKVLC+ VAVG+V + ++++  N+ LS+NFLVSLLKKNWQNVR L +KSTMGK  RV+
Sbjct:    1 MSKVSRESLNEAIAEVLKGSSEKPRKFRETIELQIGLKNYDPQKDKRFSGSIRLKHIPRPNMKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEELVSNISLSINFLVSLLKKNWQNVRSLNIKSTMGKPQRVY 216          
The following BLAST results are available for this feature:
BLAST of Phvul.005G123700.1 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
R10A_ORYSJ3.611e-12989.3560S ribosomal protein L10a OS=Oryza sativa subsp. ... [more]
R10A_ORYSI3.611e-12989.3560S ribosomal protein L10a OS=Oryza sativa subsp. ... [more]
R10A1_ARATH9.792e-12889.3560S ribosomal protein L10a-1 OS=Arabidopsis thalia... [more]
R10A2_ARATH5.977e-12788.4360S ribosomal protein L10a-2 OS=Arabidopsis thalia... [more]
R10A3_ARATH5.249e-12589.4060S ribosomal protein L10a-3 OS=Arabidopsis thalia... [more]
R10AB_DROME1.437e-9267.4460S ribosomal protein L10a-2 OS=Drosophila melanog... [more]
RL10A_SPOFR2.786e-9166.9860S ribosomal protein L10a OS=Spodoptera frugiperd... [more]
RL10A_DANRE1.142e-9066.2060S ribosomal protein L10a OS=Danio rerio OX=7955 ... [more]
RL10A_XENLA1.751e-9066.0560S ribosomal protein L10a OS=Xenopus laevis OX=83... [more]
RL10A_CAEEL2.973e-8964.3560S ribosomal protein L10a OS=Caenorhabditis elega... [more]
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InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016095Ribosomal protein L1, 3-layer alpha/beta-sandwichGENE3D3.40.50.790coord: 62..151
e-value: 3.1E-70
score: 237.7
NoneNo IPR availableGENE3D3.30.190.20coord: 22..211
e-value: 3.1E-70
score: 237.7
IPR002143Ribosomal protein L1PIRSFPIRSF002155RPL1p_RPL1a_RPL10e_RPL1ocoord: 1..216
e-value: 3.4E-49
score: 165.2
IPR028364Ribosomal protein L1/ribosomal biogenesis proteinPFAMPF00687Ribosomal_L1coord: 22..210
e-value: 3.3E-43
score: 147.8
IPR028364Ribosomal protein L1/ribosomal biogenesis proteinCDDcd00403Ribosomal_L1coord: 7..215
e-value: 3.02515E-63
score: 193.555
IPR023673Ribosomal protein L1, conserved sitePROSITEPS01199RIBOSOMAL_L1coord: 116..135
IPR023674Ribosomal protein L1-likeSUPERFAMILY56808Ribosomal protein L1coord: 22..216

Sequences
The following sequences are available for this feature:

protein sequence of Phvul.005G123700.1_Pv_G19833_v2.1

>Phvul.005G123700.1_Pv_G19833_v2.1 ID=Phvul.005G123700.1_Pv_G19833_v2.1; Name=Phvul.005G123700.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=217bp
MSKLQSDALREAISGIMGDSKEKNRNFVETIELQIGLKNYDPQKDKRFSG
SVKLPHIPRPKMKICMLGDAQHVEEAEKIGLDYMDVEALKKLNKNKKLVK
KLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNET
KAMVKFQLKKVLCMGVAVGNVSMDEKQIFQNVQLSVNFLVSLLKKNWQNV
RCLYLKSTMGKSYRVF*
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mRNA from alignment at Chr05:36074164..36076099-

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Phvul.005G123700.1_Pv_G19833_v2.1 ID=Phvul.005G123700.1_Pv_G19833_v2.1; Name=Phvul.005G123700.1; organism=Phaseolus vulgaris; type=mRNA; length=1936bp; location=Sequence derived from: Chr05:36074164..36076099- (Phaseolus vulgaris
TCTGCTTTCTTCACTCATTCCAATTCTCACTTTCTTCTTCTCTGCAATTT TTTCGCAGCTCTGAGATCTGTAGCCGCCTAGCCGTTAAGTTGGAAAAGCC CAAGTTTCAAAATGAGGTATTCATTTTCATGTTTTATGATTGTCAATGTT CAAAATTCTTTGCATGTTCACCCATTTTATCGTTAATGTAATGCTCCTGA TCGTTTTTCATTGATAACTGCTGTGTACTATGTGCGGTGACACTGTTAAT TGAAATCCTTTGGCGAAATTTGTGCATTTTGAATAGCCTAGGCTTTGTGG TCTCTAATATGTTATGGATGTTTGCTGTGCAGTAAGCTTCAGAGTGATGC TCTAAGGGAAGCTATCTCTGGTATCATGGGTGATTCCAAAGAGAAGAACC GGAATTTTGTGGAGACTATTGAACTCCAAATTGGGCTGAAAAACTATGAT CCCCAAAAGGACAAGCGTTTCAGTGGCTCTGTTAAGTTGCCTCATATTCC TCGCCCCAAGATGAAGATTTGCATGCTTGGAGATGCCCAACACGTTGAGG AGGTAACTAGTTGCTCTAATTTGCCAACACTTTTTTGAGATTTCGATTAG GTGCAATATTTTGCTGTAGCATATCCGGAAATTCAGTCGTGTCTTATTGA AACATTATTTGTCACCATAGCCGAATGTTTTTTGAAACATTACTTGTGCT ACTTATTTTATTGTTTGGGGCTAGTTTTTATAATTCTCTTTAATGACTGC TCTTGTATTACCTTGCAATGCCACCATTTTGTAACTTAGTAACTACAACT CATGAAGAGGAATTTTGTTCTGCTGCCTGGTCTGTTTTATTAATGTCTAT TATTCAAATTTGCAGGCAGAGAAGATAGGATTGGACTACATGGATGTTGA GGCGTTGAAGAAGCTTAACAAAAATAAGAAATTGGTGAAAAAGTTAGCTA AAAAGTATCATGCGTTTTTAGCCTCTGAAGCCGTTATTAAGCAGATTCCT CGTCTCCTAGGACCTGGTCTCAACAAGGCAGGCAAGTTTGATTATTGTTT GAGAGTACTTGTTGATTTGCTTCTGTTTTGCTCACTTGATATAAGAAATT GCTCTGTATCTGTTAATCTCTGGTTAAATTGTGCTTTGTACTTAACGTTT CTAATAACTAATAGTGTAGAAATCTTTGAACTGACTATATATCCTCTTAA GCAAGTTCTTACACTCCCTTTCTAAGTTGATTTACTTTTTAACTAATTCT TATATTTTGGTTTCCATGTCAATATTGCTCAAGCTTATTACAATATTTTG CCTGACTTTGCAGGGAAGTTCCCGACCCTTGTGACTCACCAAGAATCTCT CGAGTCAAAGGTTAATGAGACTAAGGCTATGGTCAAATTCCAGCTTAAGA AGGTGCTCTGTATGGGAGTAGCTGTGGGGAATGTTAGCATGGATGAAAAA CAAATCTTTCAAAATGTACAACTGAGCGTTAACTTCCTTGTCTCACTGCT GAAAAAGAACTGGCAGAATGTGAGTAGTCCACTCTTAAATTGAGTAAAAC TGTTGCATTGTTAACTTTTACTTGCTATATTTGGTCTAACCTTTCAATCG TCTGAATGTAATCTGTTCTTTATTTCAGGTTAGGTGCTTGTATCTGAAGA GCACCATGGGGAAATCGTACCGTGTCTTTTAAGTGTTTGTTCTTAAATTC AGTGAATTTCTGATCACTTAATATATTGTCGTAATAGGTTGGACAGAATC TTTCATTGTTCTACAGTTTTGTTGGATGAGTATTTTTTGGTTAGTATTTC ATGTTATTGACATGTGTTTGAAGTGCTTTGCAACATCGGATAATTTAAGC GGTGCTAATTTTAAGGTACCCTTGTTTTTTTATTTATATACAACATGCGC AATGCTCCTTCGATGCACGTATCCTATGAATCAGCT
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Coding sequence (CDS) from alignment at Chr05:36074164..36076099-

>Phvul.005G123700.1_Pv_G19833_v2.1 ID=Phvul.005G123700.1_Pv_G19833_v2.1; Name=Phvul.005G123700.1; organism=Phaseolus vulgaris; type=CDS; length=651bp; location=Sequence derived from: Chr05:36074164..36076099- (Phaseolus vulgaris
ATGAGTAAGCTTCAGAGTGATGCTCTAAGGGAAGCTATCTCTGGTATCAT
GGGTGATTCCAAAGAGAAGAACCGGAATTTTGTGGAGACTATTGAACTCC
AAATTGGGCTGAAAAACTATGATCCCCAAAAGGACAAGCGTTTCAGTGGC
TCTGTTAAGTTGCCTCATATTCCTCGCCCCAAGATGAAGATTTGCATGCT
TGGAGATGCCCAACACGTTGAGGAGGCAGAGAAGATAGGATTGGACTACA
TGGATGTTGAGGCGTTGAAGAAGCTTAACAAAAATAAGAAATTGGTGAAA
AAGTTAGCTAAAAAGTATCATGCGTTTTTAGCCTCTGAAGCCGTTATTAA
GCAGATTCCTCGTCTCCTAGGACCTGGTCTCAACAAGGCAGGGAAGTTCC
CGACCCTTGTGACTCACCAAGAATCTCTCGAGTCAAAGGTTAATGAGACT
AAGGCTATGGTCAAATTCCAGCTTAAGAAGGTGCTCTGTATGGGAGTAGC
TGTGGGGAATGTTAGCATGGATGAAAAACAAATCTTTCAAAATGTACAAC
TGAGCGTTAACTTCCTTGTCTCACTGCTGAAAAAGAACTGGCAGAATGTT
AGGTGCTTGTATCTGAAGAGCACCATGGGGAAATCGTACCGTGTCTTTTA
A
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR016095Ribosomal_uL1_3-a/b-sand
IPR002143Ribosomal_uL1
IPR028364Ribosomal_uL1/biogenesis
IPR023673Ribosomal_L1_CS
IPR023674Ribosomal_uL1-like
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0015934large ribosomal subunit