Phvul.005G124800.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Phvul.005G124800.1 vs. DB:Swiss
Match: ZWIP3_ARATH (Zinc finger protein WIP3 OS=Arabidopsis thaliana OX=3702 GN=WIP3 PE=2 SV=1) HSP 1 Score: 331.257 bits (848), Expect = 4.146e-112 Identity = 189/338 (55.92%), Postives = 213/338 (63.02%), Query Frame = 1 Query: 19 NVENKNLCLQTPTFIEWLEPSSSLTGSISPPPXXXXXXXXXXXX-----------------------ETIQFLPFKEDHGVKRDGLXXXXXXXXXXXXALHIGLP--HTGDPDPDEHDGSD---------------EKKVFHVKEEEPLKKSFQGCSFNQE---RRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLKGT-QPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGAKPFMCRKCSKSFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHSPHPS--HEGFVEDEKECVT 894 + E K L ++P+FIEWL+P SS T S S + S +IQ LP +E+ + V L IG P H G + DGSD E V +K+ +K + + E +RFWIP+PAQI VGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKG DSLKGT QPAA+LRLPCYCCA+GCKNNINHPR+KPLKDFRTLQTHYKRKHG+KPF C KC K+ AVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFG GHSPHPS +GF ED ECVT Sbjct: 3 SYETKGLSFESPSFIEWLKPQSSTTSSKSVLYRGKTRDAISRSNHHQSQMNMLERSLFLYQPQEPLNTSIQCLPLLNKLMENNSQASDIKEENKDDVVTLQIGFPKYHRGSSE----DGSDITFDHQKKPIKREIIEDGVVMMKKRRKMKFDEEIIDSDVEVCGKRFWIPSPAQIHVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGADSLKGTIQPAAILRLPCYCCAEGCKNNINHPRSKPLKDFRTLQTHYKRKHGSKPFSCGKCGKALAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGSGHSPHPSLLFDGFEED-TECVT 335
BLAST of Phvul.005G124800.1 vs. DB:Swiss
Match: ZWIP5_ARATH (Zinc finger protein WIP5 OS=Arabidopsis thaliana OX=3702 GN=WIP5 PE=2 SV=1) HSP 1 Score: 297.745 bits (761), Expect = 5.996e-99 Identity = 137/211 (64.93%), Postives = 159/211 (75.36%), Query Frame = 1 Query: 247 LHIGLPHTG-----------DPDPDEHDGSDEKKVFHVKEEEPLKKSFQGCSFNQERRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLKGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGAKPFMCRKCSKSFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHSP 846 LH+GLP+ G D DE D ++ V E ++ +WIPTP+QIL+GP QF C +C KTFNRYNNMQMHMWGHGS++RKGP+SL+GTQP MLRLPC+CCA GCKNNI+HPRAKPLKDFRTLQTHYKRKHG+KPF CR C K+FAVKGDWRTHEKNCGKLWYC+CGSDFKHKRSLKDH+++FG GH P Sbjct: 105 LHLGLPNYGVGESIRSNIAPDATTDEQDQDHDRGVEVTVESHLDDDDDHHGDLHRGHHYWIPTPSQILIGPTQFTCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCFCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGSKPFACRMCGKAFAVKGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHVKAFGNGHVP 315
BLAST of Phvul.005G124800.1 vs. DB:Swiss
Match: ZWIP2_ARATH (Zinc finger protein WIP2 OS=Arabidopsis thaliana OX=3702 GN=WIP2 PE=1 SV=1) HSP 1 Score: 293.893 bits (751), Expect = 6.870e-97 Identity = 129/166 (77.71%), Postives = 150/166 (90.36%), Query Frame = 1 Query: 385 RFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLKGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGAKPFMCRKCSKSFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHSPHPSHEGFVEDEK 882 ++WIPTP+QIL+GP QF+C +C KTFNRYNNMQMHMWGHGS++RKGP+SL+GTQP MLRLPCYCCA GC+NNI+HPRAKPLKDFRTLQTHYKRKHG KPFMCRKC K+FAV+GDWRTHEKNCGKLWYC CGSDFKHKRSLKDHI++FG GH + +GF E+++ Sbjct: 201 QYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHGAY-GIDGFDEEDE 365
BLAST of Phvul.005G124800.1 vs. DB:Swiss
Match: ZWIP4_ARATH (Zinc finger protein WIP4 OS=Arabidopsis thaliana OX=3702 GN=WIP4 PE=2 SV=1) HSP 1 Score: 294.278 bits (752), Expect = 1.235e-96 Identity = 126/158 (79.75%), Postives = 144/158 (91.14%), Query Frame = 1 Query: 373 NQERRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLKGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGAKPFMCRKCSKSFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHSP 846 N FWIPTP+QIL+GP QF+C +C KTFNRYNNMQMHMWGHGS++RKGP+SL+GTQP AML+LPCYCCA GCKNNI+HPRA+PLKDFRTLQTHYKRKHG +PF CR+C K+FAVKGDWRTHEKNCGKLWYC+CGSDFKHKRSLKDH+++FG GH P Sbjct: 236 NHLHHFWIPTPSQILMGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLKLPCYCCAPGCKNNIDHPRARPLKDFRTLQTHYKRKHGVRPFACRRCGKAFAVKGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHVKAFGNGHVP 393
BLAST of Phvul.005G124800.1 vs. DB:Swiss
Match: ZWIP6_ARATH (Zinc finger protein WIP6 OS=Arabidopsis thaliana OX=3702 GN=WIP6 PE=2 SV=1) HSP 1 Score: 280.411 bits (716), Expect = 9.865e-93 Identity = 133/211 (63.03%), Postives = 165/211 (78.20%), Query Frame = 1 Query: 244 ALHIGLPHTGDPDPDEHDGSDEKKVFHVKEEEPLKKSFQGCSFNQERRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLKGTQPAA-MLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGAKPFMCRK-CSKSFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHSPHPSHEGFV 870 ALHIG P SD++ + +E L ++ ++WIP+ +QILVGP QF+CS+C+KTFNR+NNMQMHMWGHGS++RKGP+SL+GT+ ++ +LRLPCYCCA+GCKNNI+HPR+KPLKDFRTLQTHYKRKHGAKPF CRK C K+FAV+GDWRTHEKNCGKLW+C CGSDFKHKRSLKDH+R+FG GH+ H + V Sbjct: 57 ALHIGPP-----------SSDKETLSGGNNQEGLTA--------RQGQYWIPSLSQILVGPTQFSCSVCNKTFNRFNNMQMHMWGHGSQYRKGPESLRGTKSSSSILRLPCYCCAEGCKNNIDHPRSKPLKDFRTLQTHYKRKHGAKPFRCRKKCEKTFAVRGDWRTHEKNCGKLWFCVCGSDFKHKRSLKDHVRAFGDGHAAHTVSDRVV 248
BLAST of Phvul.005G124800.1 vs. DB:Swiss
Match: TT1_ARATH (Protein TRANSPARENT TESTA 1 OS=Arabidopsis thaliana OX=3702 GN=TT1 PE=1 SV=1) HSP 1 Score: 276.944 bits (707), Expect = 3.108e-91 Identity = 129/213 (60.56%), Postives = 158/213 (74.18%), Query Frame = 1 Query: 247 LHIGLPHTGDP--DPDEHDGSDEKKVFHVKEEEPLKKSFQGCSFNQERRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLKGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGAKPFMCRKCSKSFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHSPHPSHEGFVEDE 879 LHIGLP G P D + + K++ + ++ G + +WIP P QIL+G F+C +C KTFNRYNN+QMHMWGHGS++RKGP+SLKGTQP AML +PCYCC +GC+N+I+HPR+KPLKDFRTLQTHYKRKHG KPF CR C K AVKGDWRTHEKNCGK W C CGSDFKHKRSLKDH+++FG GH P+P+ G E++ Sbjct: 87 LHIGLPGFGKPSNDAKQLKKRNGKEIATYDAGKGIENELSG------KAYWIPAPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAMLGIPCYCCVEGCRNHIDHPRSKPLKDFRTLQTHYKRKHGHKPFSCRLCGKLLAVKGDWRTHEKNCGKRWVCVCGSDFKHKRSLKDHVKAFGSGHGPYPT--GLFEEQ 291
BLAST of Phvul.005G124800.1 vs. DB:Swiss
Match: STOP1_ARATH (Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS=Arabidopsis thaliana OX=3702 GN=STOP1 PE=2 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 7.038e-26 Identity = 61/153 (39.87%), Postives = 86/153 (56.21%), Query Frame = 1 Query: 415 LVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGP-------DSLKGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGAKPFMCRKC-SKSFAVKGDWRTHEKNCGK-LWYCTCGSDFKHKRSLKDHIRSFGKGHSP 846 ++ P C+IC K F R N++MHM GHG E++ +S+ G++P + R C GCK N H + +PLK ++ HYKR H K F C +C +K F+V D +THEK+CGK W C+CG+ F K L HI F +GH+P Sbjct: 238 ILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTAAALAKPNKESVPGSEPMLIKRYSCPFL--GCKRNKEHKKFQPLKTILCVKNHYKRTHCDKSFTCSRCHTKKFSVIADLKTHEKHCGKNKWLCSCGTTFSRKDKLFGHIALF-QGHTP 387
BLAST of Phvul.005G124800.1 vs. DB:Swiss
Match: STOP1_ORYSJ (Zinc finger protein STOP1 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0871200 PE=2 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 3.877e-24 Identity = 57/149 (38.26%), Postives = 84/149 (56.38%), Query Frame = 1 Query: 415 LVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLKGTQPAAMLRLPC--YCCAQ-GCKNNINHPRAKPLKDFRTLQTHYKRKHGAKPFMCRKC-SKSFAVKGDWRTHEKNCGK-LWYCTCGSDFKHKRSLKDHIRSFGKGHSP 846 ++ P C IC K F R N++MHM GHG E++ K ++ +++ P Y C GCK N H + +PLK ++ HYKR H K + C +C +K F+V D +THEK+CG+ W C+CG+ F K L H+ F +GH+P Sbjct: 276 ILAPHTHFCLICGKGFKRDANLRMHMRGHGDEYKTAAALAKPSKDSSLESAPVTRYSCPYVGCKRNKEHKKFQPLKTILCVKNHYKRSHCDKSYTCSRCNTKKFSVIADLKTHEKHCGRDKWLCSCGTTFSRKDKLFGHVALF-QGHTP 423
BLAST of Phvul.005G124800.1 vs. DB:Swiss
Match: STOP2_ARATH (Protein SENSITIVE TO PROTON RHIZOTOXICITY 2 OS=Arabidopsis thaliana OX=3702 GN=STOP2 PE=2 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 1.883e-23 Identity = 60/151 (39.74%), Postives = 80/151 (52.98%), Query Frame = 1 Query: 415 LVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLKGT----QPAAMLRLPCYCCAQ-GCKNNINHPRAKPLKDFRTLQTHYKRKHGAKPFMCRKCS-KSFAVKGDWRTHEKNCGKL-WYCTCGSDFKHKRSLKDHIRSFGKGHSP 846 L+ C IC K F R N++MHM HG E++ + T + L+ Y C Q GC+ N H + +PLK + HYKR H K +MCR+CS K F+V D RTHEK+CG + W C+CG+ F K L H+ F GH P Sbjct: 211 LLAKYTHYCQICGKGFKRDANLRMHMRAHGDEYKTREALISPTSQDKKGGYSLKKHYYSCPQHGCRWNQRHEKFQPLKSVICAKNHYKRSHCPKMYMCRRCSVKHFSVLSDLRTHEKHCGDIKWVCSCGTKFSRKDKLMSHVSLF-LGHVP 360
BLAST of Phvul.005G124800.1 vs. DB:Swiss
Match: ART1_ORYSJ (Zinc finger protein STAR3 OS=Oryza sativa subsp. japonica OX=39947 GN=STAR3 PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 3.996e-20 Identity = 58/152 (38.16%), Postives = 79/152 (51.97%), Query Frame = 1 Query: 415 LVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLKGTQPAAMLRLPC-----YCCAQ-GCKNNINHPRAKPLKDFRTLQTHYKRKHGAKPFMCRKC-SKSFAVKGDWRTHEKNCGK-LWYCTCGSDFKHKRSLKDHIRSFGKGHSP 846 ++ P C IC K F R N++MHM GHG E++ K P P Y C GCK N H +PLK ++ HYKR H K +C +C +K F+V D +THEK+CG+ W C+CG+ F K L H+ F +GH+P Sbjct: 223 ILAPHTHFCGICGKGFKRDANLRMHMRGHGDEYKSAAALAKPPPPPEGEEQPPQPERRYSCPHAGCKRNRMHASFQPLKTILCVKNHYKRSHCEKRHVCGRCGAKRFSVMADLKTHEKHCGRDRWLCSCGTSFSRKDKLFAHVALF-QGHAP 373 The following BLAST results are available for this feature:
BLAST of Phvul.005G124800.1 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
Sequences
The
following sequences are available for this feature:
protein sequence of Phvul.005G124800.1_Pv_G19833_v2.1 >Phvul.005G124800.1_Pv_G19833_v2.1 ID=Phvul.005G124800.1_Pv_G19833_v2.1; Name=Phvul.005G124800.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=309bpback to top mRNA from alignment at Chr05:36197512..36201222+ Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Phvul.005G124800.1_Pv_G19833_v2.1 ID=Phvul.005G124800.1_Pv_G19833_v2.1; Name=Phvul.005G124800.1; organism=Phaseolus vulgaris; type=mRNA; length=3711bp; location=Sequence derived from: Chr05:36197512..36201222+ (Phaseolus vulgarisback to top Coding sequence (CDS) from alignment at Chr05:36197512..36201222+ >Phvul.005G124800.1_Pv_G19833_v2.1 ID=Phvul.005G124800.1_Pv_G19833_v2.1; Name=Phvul.005G124800.1; organism=Phaseolus vulgaris; type=CDS; length=927bp; location=Sequence derived from: Chr05:36197512..36201222+ (Phaseolus vulgarisback to top |