Phvul.005G125600.2
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Phvul.005G125600.2 vs. DB:Swiss
Match: PRRP2_ARATH (Proteinaceous RNase P 2 OS=Arabidopsis thaliana OX=3702 GN=PRORP2 PE=1 SV=1) HSP 1 Score: 424.476 bits (1090), Expect = 1.263e-144 Identity = 242/404 (59.90%), Postives = 295/404 (73.02%), Query Frame = 1
Query: 10 PKKKRKTSQNPEAKFQFELNSCSKAKDLRGAISLYDDAVLNN-TRLNQHHFNALLYLCSNSVADQSLKSTALDYGFRAFRHMSALGVVPNEXXXXXXXXXXXXKGDADYAFELVKGIGQYNNAS-PRLRTYDPALFCFCEMLDADKAYEVEEHMNGVGVSXXXXXXXXXXKVSARSGRADKVYEYLHKLRSCVRCVSESTAGVIEEWFRGAKASEVGE--VEFDVGRVKEGVLRNXXXXXXXXXXXXXDWVVNRTSVGATGHCCCCGEQLVCVDIDDAETEKFAGSVAGLAMEREVKAN-------FSEFQAWLEKHDSYEAIVDGANVGLYQQNFADGGFSISQLDDVVKELYNRSG-KKWPLIVMHNKRLRGLMENPSSRKLVEEWMKNGALYTTPNGSNDD 1185
P KK+K S+NPE F LNSCSK+KDL A++LYD A+ ++ RL+Q HF LLYLCS S+ D SL+ A+D GF F M + G+ PNEASVT+VARLAAAKG+ DYAF++VK S PRLRTY PAL CFCE L+A+K YEVEEHM G++LEEAE++ALLKVSA +GR +KVY YLHKLR V CVSE T +IEEWF G KA EVG+ + DVG ++E VL NGGGWHG GWVG+G W V + +V +TG C C EQL CVD ++ ET+KF S+ LAM+R+ K N FSEFQ WLEKH YEAIVDGAN+GLYQQNF DG FS+SQL+ V+KELY SG KWPLI++H +R++ L+ENP+ R LVEEW+ NG LY TP GSNDD
Sbjct: 19 PNKKKKVSRNPETNLLFNLNSCSKSKDLSAALALYDAAITSSEVRLSQQHFQTLLYLCSASITDISLQYLAIDRGFEIFDRMVSSGISPNEASVTSVARLAAAKGNGDYAFKVVKEFVSVGGVSIPRLRTYAPALLCFCEKLEAEKGYEVEEHMEAAGIALEEAEISALLKVSAATGRENKVYRYLHKLREYVGCVSEETLKIIEEWFCGEKAGEVGDNGIGSDVGMLREAVLNNGGGWHGHGWVGEGKWTVKKGNVSSTGRCLSCSEQLACVDTNEVETQKFVDSLVALAMDRKTKMNSCETNVVFSEFQDWLEKHGDYEAIVDGANIGLYQQNFVDGSFSLSQLESVMKELYRESGNNKWPLILLHKRRVKTLLENPTHRNLVEEWISNGVLYATPPGSNDD 422
BLAST of Phvul.005G125600.2 vs. DB:Swiss
Match: PRRP3_ARATH (Proteinaceous RNase P 3 OS=Arabidopsis thaliana OX=3702 GN=PRORP3 PE=1 SV=1) HSP 1 Score: 395.586 bits (1015), Expect = 9.769e-133 Identity = 231/393 (58.78%), Postives = 287/393 (73.03%), Query Frame = 1
Query: 43 EAKFQFELNSCSKAKDLRGAISLYDDAVLN-NTRLNQHHFNALLYLCSNSVADQSLKSTALDYGFRAFRHMSALGVVPNEXXXXXXXXXXXXKGDADYAFELVKGIGQYNNAS-PRLRTYDPALFCFCEMLDADKAYEVEEHMNGVGVSXXXXXXXXXXKVSARSGRADKVYEYLHKLRSCVRCVSESTAGVIEEWFRGAKASEVGE--VEFDVGRVKEGVLRNXXXXXXXXXXXXXDWVVNRTSVGATGHCCCCGEQLVCVDIDDAETEKFAGSVAGLAMEREVK-------ANFSEFQAWLEKHDSYEAIVDGANVGLYQQNFADGGFSISQLDDVVKELYNRSG-KKWPLIVMHNKRLRGLMENPSSRKLVEEWMKNGALYTTPNGSNDD 1185
E L+SCSK KDL A++LYD A+ + + RLNQ HF +LLYLCS ++D SL++ A+D GF+ F M + G+ PNE+SVTAVARLAAAKGD DYAF+LVK + S PRLRTY PAL CFC+ L+A+K YEVE+HM+ G+ LEEAE++ALLKVSA +GR +KVY YL KLR CV CVSE T+ IEEWF G KASEV + + D+ ++ VL+NGGGWHG GWVG+G W+V + +V + G C C E L CVD ++ ETE F S+ LAMER+ K A+FSEFQ WLEKH YEAI+DGAN+GLYQQNFADGGFS+ QL+ VVKELYN+SG KK PLI++H KR+ L+ENP+ R LVEEW+ N LY TP GSNDD
Sbjct: 89 EKSLLINLHSCSKRKDLSAALALYDAAITSSDIRLNQQHFQSLLYLCSAFISDPSLQTVAIDRGFQIFDRMVSSGISPNESSVTAVARLAAAKGDGDYAFKLVKDLVAVGGVSVPRLRTYAPALLCFCDTLEAEKGYEVEDHMDASGIVLEEAEISALLKVSAATGRENKVYRYLQKLRECVGCVSEETSKAIEEWFYGVKASEVSDNGIGSDIELLRAAVLKNGGGWHGLGWVGEGKWIVKKGNVSSAGKCLSCDEHLACVDTNEVETEDFVNSLVTLAMERKAKMNSCEPMADFSEFQEWLEKHGDYEAILDGANIGLYQQNFADGGFSLPQLEAVVKELYNKSGSKKQPLILLHKKRVNALLENPNHRNLVEEWINNNVLYATPPGSNDD 481
BLAST of Phvul.005G125600.2 vs. DB:Swiss
Match: PRRP1_ARATH (Proteinaceous RNase P 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PRORP1 PE=1 SV=1) HSP 1 Score: 302.753 bits (774), Expect = 1.322e-96 Identity = 191/393 (48.60%), Postives = 256/393 (65.14%), Query Frame = 1
Query: 16 KKRKTSQNPEAKFQFELNSCSKAKDLRGAISLYDDAVLNNTRLNQHHFNALLYLCSNS-VADQSLKSTALDYGFRAFRHMSALGVVPNEXXXXXXXXXXXXKGDADYAFELVKGIGQYNNASPRLRTYDPALFCFCEMLDADKAYEVEEHMNGVGVSXXXXXXXXXXKVSARSGRADKVYEYLHKLRSCVRCVSESTAGVIEEWFRGAKASEVGEVEFDVGRVKEGVLRNXXXXXXXXXXXXXDWVVNRTSVGATGHCCCCGEQLVCVDIDDAETEKFAGSVAGLAMEREVKANFSEFQAWLEKHDSYEAIVDGANVGLYQQNFADGGFSISQLDDVVKELYNRS-GKKWPLIVMHNKRLR-GLMENPSSRKLVEEWMKNGALYTTPNGSNDD 1185
KK+ Q+PEA + +L+ CSK D+ A+ LYD+A N +L+Q+H+N LLY+CS + A +S + L GF F+ M VVPNEA+ T ARLA AK D + AF++VK + + PRLR+Y PALF FC DADKAYEV+ HM V EE ELAALLKVS + ADKVY+ L +LR VR VS+ST +IEEWF+ A++ G ++DV ++++ V+ GGGWHGQGW+G G W V RT + G C CC E+LVC+DI+ ETE FA S+ LA EREVKANF++FQ WLE+H ++A++DGAN+GL Q FS QL++ V+ S K+ PL+++H R+ G P +R L+E+W GALY TP GSNDD
Sbjct: 88 KKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFG-IQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEVATKTGVKKWDVKKIRDAVVSGGGGWHGQGWLGTGKWNVKRTEMDENGVCKCCKEKLVCIDINPVETETFAASLTRLACEREVKANFNQFQEWLERHGPFDAVIDGANMGLVNQR----SFSFFQLNNTVQRCQQISPSKRLPLVILHKSRVNGGPATYPKNRALLEKWKNAGALYATPPGSNDD 475 The following BLAST results are available for this feature:
BLAST of Phvul.005G125600.2 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot) Total hits: 3
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
Sequences
The
following sequences are available for this feature:
protein sequence of Phvul.005G125600.2_Pv_G19833_v2.1 >Phvul.005G125600.2_Pv_G19833_v2.1 ID=Phvul.005G125600.2_Pv_G19833_v2.1; Name=Phvul.005G125600.2_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=396bpback to top mRNA from alignment at Chr05:36297632..36299750- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Phvul.005G125600.2_Pv_G19833_v2.1 ID=Phvul.005G125600.2_Pv_G19833_v2.1; Name=Phvul.005G125600.2; organism=Phaseolus vulgaris; type=mRNA; length=2119bp; location=Sequence derived from: Chr05:36297632..36299750- (Phaseolus vulgarisback to top Coding sequence (CDS) from alignment at Chr05:36297632..36299750- >Phvul.005G125600.2_Pv_G19833_v2.1 ID=Phvul.005G125600.2_Pv_G19833_v2.1; Name=Phvul.005G125600.2; organism=Phaseolus vulgaris; type=CDS; length=1188bp; location=Sequence derived from: Chr05:36297632..36299750- (Phaseolus vulgarisback to top |