Phvul.005G126800.1

Transcript Overview
NamePhvul.005G126800.1
Unique NamePhvul.005G126800.1_Pv_G19833_v2.1
TypemRNA
OrganismPhaseolus vulgaris (Common bean)
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr05supercontigChr05:36442278..36444057 -Phaseolus vulgaris G19833 genome v2.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Phaseolus vulgaris G19833 genome v2.12019-09-17
InterProScan: Phaseolus vulgaris G19833 genome v2.12019-10-18
BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot2019-10-18
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
pvpvL016Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvpvL108Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pspvL467Pisum sativum Cameor genome v1aPisum sativum
pspvL477Pisum sativum Cameor genome v1aPisum sativum
pvvuR472Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pvvuR481Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pvvuR493Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caipvL0050Cicer arietinum ICC 4958 genome v2Cicer arietinum
caipvL0289Cicer arietinum ICC 4958 genome v2Cicer arietinum
crpvL075Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
capvL043Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
crpvL274Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
caipvL0837Cicer arietinum ICC 4958 genome v2Cicer arietinum
capvL233Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
capvL621Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccpvL0464Cajanus cajan Asha genome v1.0Cajanus cajan
ccpvL1033Cajanus cajan Asha genome v1.0Cajanus cajan
anpvL0149Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0334Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0665Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0780Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0871Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL1030Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL1040Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL1169Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL1224Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL1302Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL1378Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
aspvL156Vigna angularis Jingnong 6 genome v1.1Vigna angularis
aspvL691Vigna angularis Jingnong 6 genome v1.1Vigna angularis
pvzwsR469Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvzwsR483Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvzwsR485Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvvfhR481Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvvfhR510Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvvfhR523Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvvfhR527Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvtifR478Vicia faba cv. Tiffany genome v1.0Vicia faba
pvtifR520Vicia faba cv. Tiffany genome v1.0Vicia faba
pvtifR523Vicia faba cv. Tiffany genome v1.0Vicia faba
pvvrvR448Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvrvR455Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvrvR457Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvuaR408Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvuaR417Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvuaR429Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvssR535Vicia sativa cv. Studenica genome v1.0Vicia sativa
pvvssR556Vicia sativa cv. Studenica genome v1.0Vicia sativa
pvvssR582Vicia sativa cv. Studenica genome v1.0Vicia sativa
pvvssR599Vicia sativa cv. Studenica genome v1.0Vicia sativa
canpvL037Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canpvL215Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canpvL604Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjpvL090Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjpvL505Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjpvL669Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carpvL053Cicer arietinum
carpvL223Cicer arietinum
carpvL336Cicer arietinum
carpvL598Cicer arietinum
ccapvL124Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapvL289Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapvL379Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapvL482Cajanus cajan cv. Asha genome v2.0Cajanus cajan
pvvumR534Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvumR537Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvumR558Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvvaR516Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvvaR517Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvvaR563Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvasR531Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvasR535Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvasR559Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvstR532Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvvstR536Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvvstR561Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvpvfR429Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR444Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR457Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR473Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvvunR439Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
pvvunR444Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
pvvunR456Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
Vigun05g239400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Vfaba.Hedin2.R1.6g021040.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
rna-KK1_026372Cajanus cajan Asha genome v1.0Cajanus cajan
rna-TanjilR_02599Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
XM_058923741.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
jg7880.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
rna-TanjilR_03191Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Ca_07035Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
evm.model.Chr05.2268Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Cr_01320.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Ca_16451Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Vigst.07G053800.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Vigan.07G070800.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Vfaba.Hedin2.R1.1g064640.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Psat07G0448900-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Va05G048600.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vigun05g239400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
jg44250.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vfaba.Tiffany.R1.6g015960.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Psat05G0716700-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Ca_18183.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
rna-XM_014641786.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
rna-XM_004506079.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
LR48_mrnaVigan05g171400Vigna angularis Jingnong 6 genome v1.1Vigna angularis
XM_058873763.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Cc_v2.0_02968.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
rna-TanjilR_17098Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Cc_v2.0_23729.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
rna-TanjilR_23635Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vum_07G00573.1Vigna umbellata FF25 genome v1.0Vigna umbellata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
PvulFLAVERTChr05.1000929Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Phvul.005G126800Phvul.005G126800_Pv_G19833_v2.1Phaseolus vulgarisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Phvul.005G126800.1Phvul.005G126800.1_Pv_G19833_v2.1-proteinPhaseolus vulgarispolypeptide
Phvul.005G126800.1_Pv_G19833_v2.1Phvul.005G126800.1_Pv_G19833_v2.1Phaseolus vulgarispolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.005G126800.1.v2.1.CDS.4Phvul.005G126800.1.v2.1.CDS.4_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.005G126800.1.v2.1.CDS.3Phvul.005G126800.1.v2.1.CDS.3_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.005G126800.1.v2.1.CDS.2Phvul.005G126800.1.v2.1.CDS.2_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.005G126800.1.v2.1.CDS.1Phvul.005G126800.1.v2.1.CDS.1_Pv_G19833_v2.1Phaseolus vulgarisCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.005G126800.1.v2.1.three_prime_UTR.1Phvul.005G126800.1.v2.1.three_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgaristhree_prime_UTR


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.005G126800.1.v2.1.five_prime_UTR.2Phvul.005G126800.1.v2.1.five_prime_UTR.2_Pv_G19833_v2.1Phaseolus vulgarisfive_prime_UTR
Phvul.005G126800.1.v2.1.five_prime_UTR.1Phvul.005G126800.1.v2.1.five_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgarisfive_prime_UTR


Homology
BLAST of Phvul.005G126800.1 vs. DB:Swiss
Match: RLP24_ARATH (Probable ribosome biogenesis protein RLP24 OS=Arabidopsis thaliana OX=3702 GN=At2g44860 PE=1 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 1.050e-74
Identity = 115/168 (68.45%), Postives = 136/168 (80.95%), Query Frame = 1
Query:    1 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRVHGKDMTQDSTFEFERKRNRPERYDRNLADNVLKAIPKIEKIRVTREERHHKNRMXXXXXXXXXXXXXXXXQSISLVKAPSVLQQDPSLTLPKIKVKVSQQQSEENRAMEE 504
            MRLEKCWFCSST+YPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKA+R  HGKDMT+D+TFEFE+KRNRPERYDRN+ +N L AI KI KIR  RE +H +NR+K  K+K L + +KEL+Q+I +V+AP            KIKV VS+++S +N AMEE
Sbjct:    1 MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHGKDMTKDTTFEFEKKRNRPERYDRNVTENTLMAIKKIAKIRTAREAKHIENRLKPNKQKKLNDDMKELDQNIHMVQAPGA---------QKIKVDVSEKKSVQNEAMEE 159          
BLAST of Phvul.005G126800.1 vs. DB:Swiss
Match: RLP24_DICDI (Probable ribosome biogenesis protein RLP24 OS=Dictyostelium discoideum OX=44689 GN=rlp24 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 5.076e-56
Identity = 83/140 (59.29%), Postives = 112/140 (80.00%), Query Frame = 1
Query:    1 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRVHGKDMTQDSTFEFERKRNRPERYDRNLADNVLKAIPKIEKIRVTREERHHKNRMXXXXXXXXXXXXXXXXQSISLVKAPSVL 420
            MR+EKC+FCS  VYPGHG+ FVRND K FRFCRSKCHKNFK+KRNPRK +WTKA+R+++GK+MT D T EFE+KRNRP +YDR L +N + A+ +++KI+  RE+  +KNRM+G K    K+ +KE+ Q++SL++ PS L
Sbjct:    1 MRIEKCYFCSGPVYPGHGVMFVRNDCKQFRFCRSKCHKNFKLKRNPRKTRWTKAFRKLNGKEMTVDKTLEFEKKRNRPVKYDRELINNTIIAMARVQKIKERREKTFYKNRMEGVKGMQKKQKLKEINQNLSLIRGPSAL 140          
BLAST of Phvul.005G126800.1 vs. DB:Swiss
Match: RLP24_MOUSE (Probable ribosome biogenesis protein RLP24 OS=Mus musculus OX=10090 GN=Rsl24d1 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 4.128e-48
Identity = 73/137 (53.28%), Postives = 106/137 (77.37%), Query Frame = 1
Query:    1 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRVHGKDMTQDSTFEFERKRNRPERYDRNLADNVLKAIPKIEKIRVTREERHHKNRMXXXXXXXXXXXXXXXXQSISLVKAP 411
            MR+EKC+FCS  +YPGHG+ FVRND K+FRFC+SKCHKNFK KRNPRKV+WTKA+R+  GK++T D++FEFE++RN P +Y R L +  + A+ ++E+I+  R+ +   NR+K  KE    + +KE++Q+I L++AP
Sbjct:    1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAGKELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQKVQDIKEVKQNIHLIRAP 137          
BLAST of Phvul.005G126800.1 vs. DB:Swiss
Match: RLP24_BOVIN (Probable ribosome biogenesis protein RLP24 OS=Bos taurus OX=9913 GN=RSL24D1 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 4.359e-48
Identity = 74/137 (54.01%), Postives = 106/137 (77.37%), Query Frame = 1
Query:    1 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRVHGKDMTQDSTFEFERKRNRPERYDRNLADNVLKAIPKIEKIRVTREERHHKNRMXXXXXXXXXXXXXXXXQSISLVKAP 411
            MR+EKC+FCS  +YPGHG+ FVRND K+FRFC+SKCHKNFK KRNPRKV+WTKA+R+  GK++T D++FEFE++RN P +Y R L +  + A+ ++E+I+  R+ +   NR+K  KE    + VKE++Q+I L++AP
Sbjct:    1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAGKELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQKVQDVKEVKQNIHLIRAP 137          
BLAST of Phvul.005G126800.1 vs. DB:Swiss
Match: RLP24_HUMAN (Probable ribosome biogenesis protein RLP24 OS=Homo sapiens OX=9606 GN=RSL24D1 PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 8.030e-48
Identity = 73/137 (53.28%), Postives = 106/137 (77.37%), Query Frame = 1
Query:    1 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRVHGKDMTQDSTFEFERKRNRPERYDRNLADNVLKAIPKIEKIRVTREERHHKNRMXXXXXXXXXXXXXXXXQSISLVKAP 411
            MR+EKC+FCS  +YPGHG+ FVRND K+FRFC+SKCHKNFK KRNPRKV+WTKA+R+  GK++T D++FEFE++RN P +Y R L +  + A+ ++E+I+  R+ +   NR+K  KE    + +KE++Q+I L++AP
Sbjct:    1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAGKELTVDNSFEFEKRRNEPIKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQKVQDIKEVKQNIHLIRAP 137          
BLAST of Phvul.005G126800.1 vs. DB:Swiss
Match: RLP24_RAT (Probable ribosome biogenesis protein RLP24 OS=Rattus norvegicus OX=10116 GN=Rsl24d1 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 9.354e-48
Identity = 72/137 (52.55%), Postives = 106/137 (77.37%), Query Frame = 1
Query:    1 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRVHGKDMTQDSTFEFERKRNRPERYDRNLADNVLKAIPKIEKIRVTREERHHKNRMXXXXXXXXXXXXXXXXQSISLVKAP 411
            MR+EKC+FCS  +YPGHG+ FVRND K+FRFC+SKCHKNFK KRNPRKV+WTKA+R+  GK++T D++FEFE++RN P +Y R L +  + A+ ++E+I+  R+ +   NR+K  KE    + ++E++Q+I L++AP
Sbjct:    1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAGKELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQRRQAKFIMNRLKKNKELQKVQDIREVKQNIHLIRAP 137          
BLAST of Phvul.005G126800.1 vs. DB:Swiss
Match: RLP24_DANRE (Probable ribosome biogenesis protein RLP24 OS=Danio rerio OX=7955 GN=rsl24d1 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.693e-47
Identity = 75/141 (53.19%), Postives = 104/141 (73.76%), Query Frame = 1
Query:    1 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRVHGKDMTQDSTFEFERKRNRPERYDRNLADNVLKAIPKIEKIRVTREERHHKNRMXXXXXXXXXXXXXXXXQSISLVKAPSVLQ 423
            MR+EKC+FCS+ VYPGHG+ FVRND K+FRFCRSKCHKNFK KRNPRK +WTKA+R+  GK++T D++ EFE++RN P +Y+R L    ++A+ K+E I+  R+ R   NR+K  KE      + E++++I L+KAP   Q
Sbjct:    1 MRIEKCYFCSAPVYPGHGMMFVRNDCKVFRFCRSKCHKNFKKKRNPRKTRWTKAFRKSAGKELTVDNSLEFEKRRNTPVKYNRELWSKTVEAMRKVESIKHKRQARFIMNRLKKGKELEKAADISEVKKNIHLIKAPHAGQ 141          
BLAST of Phvul.005G126800.1 vs. DB:Swiss
Match: RLP24_PONAB (Probable ribosome biogenesis protein RLP24 OS=Pongo abelii OX=9601 GN=RSL24D1 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.364e-47
Identity = 72/137 (52.55%), Postives = 106/137 (77.37%), Query Frame = 1
Query:    1 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRVHGKDMTQDSTFEFERKRNRPERYDRNLADNVLKAIPKIEKIRVTREERHHKNRMXXXXXXXXXXXXXXXXQSISLVKAP 411
            MR+EKC+FCS  +YPGHG+ FVRND K+FRFC+SKCHKNFK +RNPRKV+WTKA+R+  GK++T D++FEFE++RN P +Y R L +  + A+ ++E+I+  R+ +   NR+K  KE    + +KE++Q+I L++AP
Sbjct:    1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKRRNPRKVRWTKAFRKAAGKELTVDNSFEFEKRRNEPIKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQKVQDIKEVKQNIHLIRAP 137          
BLAST of Phvul.005G126800.1 vs. DB:Swiss
Match: RLP24_CANGA (Ribosome biogenesis protein RLP24 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) OX=284593 GN=RLP24 PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.254e-47
Identity = 71/112 (63.39%), Postives = 86/112 (76.79%), Query Frame = 1
Query:    1 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRVHGKDMTQDSTFEFERKRNRPERYDRNLADNVLKAIPKIEKIRVTREERHHKNRM 336
            MR+ +C FCSS VYPGHGI FVRNDAK FRFCRSKCHKNFK +RNPRK+KWTKA+R+  GK++  DST  F ++RN P RY+R L    LKA+ +IE+IR  RE   +KNRM
Sbjct:    1 MRIYQCHFCSSPVYPGHGIMFVRNDAKEFRFCRSKCHKNFKQRRNPRKLKWTKAFRKAAGKELAVDSTLTFAQRRNVPVRYNRELVATTLKAMSRIEEIRQKRERAFYKNRM 112          
BLAST of Phvul.005G126800.1 vs. DB:Swiss
Match: RLP24_SCHPO (Ribosome biogenesis protein rlp24 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rlp24 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 5.780e-46
Identity = 82/174 (47.13%), Postives = 110/174 (63.22%), Query Frame = 1
Query:    1 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRVHGKDMTQDSTFEF-ERKRNRPERYDRNLADNVLKAIPKIEKIRVTREERHHKNRMXXXXXXXXXXXXXXXXQSISLVKAPSVLQQDPSLTLPKIKVKVSQQQ-----SEENRAMEE 504
            MR+  C+FCS  VYPGHGI FVRND+K+FRFCRSKCHKNFKMKRNPRKV WTKAYR+ HGK+M  D+       +RN P RYDRN+    L A+ ++ ++   RE   +K R+ GK+ + L+EA K + Q++            P  T P+ +V+ ++ Q     S+E   MEE
Sbjct:    1 MRVHTCYFCSGPVYPGHGIMFVRNDSKVFRFCRSKCHKNFKMKRNPRKVAWTKAYRKAHGKEMVYDTALAVTAARRNVPVRYDRNVIATTLNAMKRVSQVHAKRERLFYKKRLAGKRAQELQEAQKLIAQNV------------PQFTEPEGEVETAEVQEPQIVSDEEYTMEE 162          
The following BLAST results are available for this feature:
BLAST of Phvul.005G126800.1 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
RLP24_ARATH1.050e-7468.45Probable ribosome biogenesis protein RLP24 OS=Arab... [more]
RLP24_DICDI5.076e-5659.29Probable ribosome biogenesis protein RLP24 OS=Dict... [more]
RLP24_MOUSE4.128e-4853.28Probable ribosome biogenesis protein RLP24 OS=Mus ... [more]
RLP24_BOVIN4.359e-4854.01Probable ribosome biogenesis protein RLP24 OS=Bos ... [more]
RLP24_HUMAN8.030e-4853.28Probable ribosome biogenesis protein RLP24 OS=Homo... [more]
RLP24_RAT9.354e-4852.55Probable ribosome biogenesis protein RLP24 OS=Ratt... [more]
RLP24_DANRE1.693e-4753.19Probable ribosome biogenesis protein RLP24 OS=Dani... [more]
RLP24_PONAB2.364e-4752.55Probable ribosome biogenesis protein RLP24 OS=Pong... [more]
RLP24_CANGA3.254e-4763.39Ribosome biogenesis protein RLP24 OS=Candida glabr... [more]
RLP24_SCHPO5.780e-4647.13Ribosome biogenesis protein rlp24 OS=Schizosacchar... [more]
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InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011017TRASH domainSMARTSM007464TRASHcoord: 6..44
e-value: 7.0E-12
score: 55.5
IPR038630Ribosomal protein L24e/L24 superfamilyGENE3D2.30.170.20coord: 1..69
e-value: 1.2E-32
score: 113.7
IPR000988Ribosomal protein L24e-relatedPFAMPF01246Ribosomal_L24ecoord: 1..65
e-value: 9.0E-34
score: 115.5
IPR000988Ribosomal protein L24e-relatedCDDcd00472Ribosomal_L24e_L24coord: 1..54
e-value: 9.15561E-31
score: 103.806
IPR023442Ribosomal protein L24e, conserved sitePROSITEPS01073RIBOSOMAL_L24Ecoord: 8..25
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 4..56

Sequences
The following sequences are available for this feature:

protein sequence of Phvul.005G126800.1_Pv_G19833_v2.1

>Phvul.005G126800.1_Pv_G19833_v2.1 ID=Phvul.005G126800.1_Pv_G19833_v2.1; Name=Phvul.005G126800.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=169bp
MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVK
WTKAYRRVHGKDMTQDSTFEFERKRNRPERYDRNLADNVLKAIPKIEKIR
VTREERHHKNRMKGKKEKLLKEAVKELEQSISLVKAPSVLQQDPSLTLPK
IKVKVSQQQSEENRAMEE*
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mRNA from alignment at Chr05:36442278..36444057-

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Phvul.005G126800.1_Pv_G19833_v2.1 ID=Phvul.005G126800.1_Pv_G19833_v2.1; Name=Phvul.005G126800.1; organism=Phaseolus vulgaris; type=mRNA; length=1780bp; location=Sequence derived from: Chr05:36442278..36444057- (Phaseolus vulgaris
AACAGTCCATTAGAAATAATGAAAACACGTTGAAAGGGTTTTAGAATTAG GGCTTTTTTAGTTCTTCCCTTCTGAACCCACCACCACAGCCACCGCGAGG CGTGGTCAGAATCGGAGTTCAACCATAGCAGCAATCATGTAAGTGCAAAG CCATAGCTTCAACTTTATATTTCAATTCCAATCGCGTCGATATCTTTGTT AGGGTAAATATTCAGAACGATGTTGTGTAGATTTCCTTTGATGGTATAAT CACTGTATGTTTTAACATTTTCGAATGTTATAATTGAGATTACGACGATG ATGATTAGGATAATTAGGTTATGCGTATTCTGTAGTAACGTAGACACTTT TTCTGTGTTATTGGGTAACATAAAGAACAATACTTTGCTACTGCTGCCCT CAATTTTCTGTGTTTTTTTACGGGTTGTTCTAAACAATAGTGTTTTTGGC AGTTCACGGGATTGGTTTTATTGGATGATGTTGGTTTACCGATTAATAGT TTCTACTGCACATGTAGTGATTTAAGAGTCGATTCTGTTGCATTTTTTTA TATTTTATTGGCTCCTTGGGGTATTTAACTGATGAACTTCCTGCCAGTGA TACTTTGATGATATTAGTTGGGGCTAACAATATATATCTCAACATGTCAT CTGAGTGGATTGTGCTATTTTATATATATCTTATTGTTTTCTGTTCTGAT CGTTTATTTTTTCTTGTGAAGTGCTGCTCTTTTCTGAGGCACGATGAGAT TGGAAAAATGCTGGTTTTGCTCTTCAACCGTATACCCTGGACATGGAATC CAGTTTGTTCGCAATGATGCGAAGGTAAAATGAAGTCCACTCTTTCGCTA AGTTCTAACTGTTTTTGAGGATTCTACACTTCATCTATTCATCCTCTTGT TACTGATTGTTCTTGTTAGATCAGATGAAATTAACTGTTATTGTTTTGCA GATTTTTCGGTTTTGTAGGTCTAAATGCCACAAAAACTTCAAAATGAAGA GAAATCCCCGTAAGGTAAAATGGACCAAGGCATATCGTCGAGTGCATGGG AAGGATATGACACAGGTAATTATTTGGATACTAGGTACGCTCTTAATTTA ATTGCCATGTTCTGGGAAAACTTAACAGCTATTATTTTTTGTTTTAGGAC TCGACCTTTGAGTTTGAGAGGAAGCGAAACAGGCCTGAAAGATATGACAG GAATCTTGCGGACAATGTCCTGAAGGCTATTCCAAAGATTGAGAAGATCA GAGTCACCAGGGAGGAAAGACACCATAAGAATAGGTTCTCTTTGATTCCT TATTTATTTATATTGGAAAACTTTACGAAGTATTTTTTTTTGGCCTTTTG CTGATATTGTATAAAAACTCAAATAGGATGAAGGGCAAAAAGGAAAAGCT GCTGAAGGAGGCAGTGAAAGAGTTGGAGCAGAGCATCAGTTTGGTCAAAG CTCCTTCAGTGCTTCAACAGGACCCATCTCTCACTTTACCAAAGATCAAG GTCAAGGTTTCTCAACAGCAATCAGAGGAGAATCGTGCCATGGAAGAGTA GTTCTATCAATGTTGCATTTAGTTTTTACTGTTTTAATATCTGTTGCTAG ATTAGTTCCCCACAAGGCCCTGATTACCAGTTCCATTGTGATCATTAATG TGATTTTGATACAAGATTTTTGGGTAAAGAAGTTATGATGTGTTTGTTGT GTCTTGAACAACGGTTTTGTTAGATAATATTTTTGAAAAATCATCTGAAG TTGGAAAATCAAGCATTTTTTCTCTCCCAT
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Coding sequence (CDS) from alignment at Chr05:36442278..36444057-

>Phvul.005G126800.1_Pv_G19833_v2.1 ID=Phvul.005G126800.1_Pv_G19833_v2.1; Name=Phvul.005G126800.1; organism=Phaseolus vulgaris; type=CDS; length=507bp; location=Sequence derived from: Chr05:36442278..36444057- (Phaseolus vulgaris
ATGAGATTGGAAAAATGCTGGTTTTGCTCTTCAACCGTATACCCTGGACA
TGGAATCCAGTTTGTTCGCAATGATGCGAAGATTTTTCGGTTTTGTAGGT
CTAAATGCCACAAAAACTTCAAAATGAAGAGAAATCCCCGTAAGGTAAAA
TGGACCAAGGCATATCGTCGAGTGCATGGGAAGGATATGACACAGGACTC
GACCTTTGAGTTTGAGAGGAAGCGAAACAGGCCTGAAAGATATGACAGGA
ATCTTGCGGACAATGTCCTGAAGGCTATTCCAAAGATTGAGAAGATCAGA
GTCACCAGGGAGGAAAGACACCATAAGAATAGGATGAAGGGCAAAAAGGA
AAAGCTGCTGAAGGAGGCAGTGAAAGAGTTGGAGCAGAGCATCAGTTTGG
TCAAAGCTCCTTCAGTGCTTCAACAGGACCCATCTCTCACTTTACCAAAG
ATCAAGGTCAAGGTTTCTCAACAGCAATCAGAGGAGAATCGTGCCATGGA
AGAGTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR011017TRASH_dom
IPR038630L24e/L24_sf
IPR000988Ribosomal_eL24-rel
IPR023442Ribosomal_L24e_CS