Phvul.005G126800.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Phvul.005G126800.1 vs. DB:Swiss
Match: RLP24_ARATH (Probable ribosome biogenesis protein RLP24 OS=Arabidopsis thaliana OX=3702 GN=At2g44860 PE=1 SV=1) HSP 1 Score: 223.787 bits (569), Expect = 1.050e-74 Identity = 115/168 (68.45%), Postives = 136/168 (80.95%), Query Frame = 1 Query: 1 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRVHGKDMTQDSTFEFERKRNRPERYDRNLADNVLKAIPKIEKIRVTREERHHKNRMXXXXXXXXXXXXXXXXQSISLVKAPSVLQQDPSLTLPKIKVKVSQQQSEENRAMEE 504 MRLEKCWFCSST+YPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKA+R HGKDMT+D+TFEFE+KRNRPERYDRN+ +N L AI KI KIR RE +H +NR+K K+K L + +KEL+Q+I +V+AP KIKV VS+++S +N AMEE Sbjct: 1 MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHGKDMTKDTTFEFEKKRNRPERYDRNVTENTLMAIKKIAKIRTAREAKHIENRLKPNKQKKLNDDMKELDQNIHMVQAPGA---------QKIKVDVSEKKSVQNEAMEE 159
BLAST of Phvul.005G126800.1 vs. DB:Swiss
Match: RLP24_DICDI (Probable ribosome biogenesis protein RLP24 OS=Dictyostelium discoideum OX=44689 GN=rlp24 PE=2 SV=1) HSP 1 Score: 176.792 bits (447), Expect = 5.076e-56 Identity = 83/140 (59.29%), Postives = 112/140 (80.00%), Query Frame = 1 Query: 1 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRVHGKDMTQDSTFEFERKRNRPERYDRNLADNVLKAIPKIEKIRVTREERHHKNRMXXXXXXXXXXXXXXXXQSISLVKAPSVL 420 MR+EKC+FCS VYPGHG+ FVRND K FRFCRSKCHKNFK+KRNPRK +WTKA+R+++GK+MT D T EFE+KRNRP +YDR L +N + A+ +++KI+ RE+ +KNRM+G K K+ +KE+ Q++SL++ PS L Sbjct: 1 MRIEKCYFCSGPVYPGHGVMFVRNDCKQFRFCRSKCHKNFKLKRNPRKTRWTKAFRKLNGKEMTVDKTLEFEKKRNRPVKYDRELINNTIIAMARVQKIKERREKTFYKNRMEGVKGMQKKQKLKEINQNLSLIRGPSAL 140
BLAST of Phvul.005G126800.1 vs. DB:Swiss
Match: RLP24_MOUSE (Probable ribosome biogenesis protein RLP24 OS=Mus musculus OX=10090 GN=Rsl24d1 PE=2 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 4.128e-48 Identity = 73/137 (53.28%), Postives = 106/137 (77.37%), Query Frame = 1 Query: 1 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRVHGKDMTQDSTFEFERKRNRPERYDRNLADNVLKAIPKIEKIRVTREERHHKNRMXXXXXXXXXXXXXXXXQSISLVKAP 411 MR+EKC+FCS +YPGHG+ FVRND K+FRFC+SKCHKNFK KRNPRKV+WTKA+R+ GK++T D++FEFE++RN P +Y R L + + A+ ++E+I+ R+ + NR+K KE + +KE++Q+I L++AP Sbjct: 1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAGKELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQKVQDIKEVKQNIHLIRAP 137
BLAST of Phvul.005G126800.1 vs. DB:Swiss
Match: RLP24_BOVIN (Probable ribosome biogenesis protein RLP24 OS=Bos taurus OX=9913 GN=RSL24D1 PE=2 SV=1) HSP 1 Score: 156.377 bits (394), Expect = 4.359e-48 Identity = 74/137 (54.01%), Postives = 106/137 (77.37%), Query Frame = 1 Query: 1 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRVHGKDMTQDSTFEFERKRNRPERYDRNLADNVLKAIPKIEKIRVTREERHHKNRMXXXXXXXXXXXXXXXXQSISLVKAP 411 MR+EKC+FCS +YPGHG+ FVRND K+FRFC+SKCHKNFK KRNPRKV+WTKA+R+ GK++T D++FEFE++RN P +Y R L + + A+ ++E+I+ R+ + NR+K KE + VKE++Q+I L++AP Sbjct: 1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAGKELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQKVQDVKEVKQNIHLIRAP 137
BLAST of Phvul.005G126800.1 vs. DB:Swiss
Match: RLP24_HUMAN (Probable ribosome biogenesis protein RLP24 OS=Homo sapiens OX=9606 GN=RSL24D1 PE=1 SV=1) HSP 1 Score: 155.992 bits (393), Expect = 8.030e-48 Identity = 73/137 (53.28%), Postives = 106/137 (77.37%), Query Frame = 1 Query: 1 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRVHGKDMTQDSTFEFERKRNRPERYDRNLADNVLKAIPKIEKIRVTREERHHKNRMXXXXXXXXXXXXXXXXQSISLVKAP 411 MR+EKC+FCS +YPGHG+ FVRND K+FRFC+SKCHKNFK KRNPRKV+WTKA+R+ GK++T D++FEFE++RN P +Y R L + + A+ ++E+I+ R+ + NR+K KE + +KE++Q+I L++AP Sbjct: 1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAGKELTVDNSFEFEKRRNEPIKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQKVQDIKEVKQNIHLIRAP 137
BLAST of Phvul.005G126800.1 vs. DB:Swiss
Match: RLP24_RAT (Probable ribosome biogenesis protein RLP24 OS=Rattus norvegicus OX=10116 GN=Rsl24d1 PE=2 SV=1) HSP 1 Score: 155.606 bits (392), Expect = 9.354e-48 Identity = 72/137 (52.55%), Postives = 106/137 (77.37%), Query Frame = 1 Query: 1 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRVHGKDMTQDSTFEFERKRNRPERYDRNLADNVLKAIPKIEKIRVTREERHHKNRMXXXXXXXXXXXXXXXXQSISLVKAP 411 MR+EKC+FCS +YPGHG+ FVRND K+FRFC+SKCHKNFK KRNPRKV+WTKA+R+ GK++T D++FEFE++RN P +Y R L + + A+ ++E+I+ R+ + NR+K KE + ++E++Q+I L++AP Sbjct: 1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAGKELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQRRQAKFIMNRLKKNKELQKVQDIREVKQNIHLIRAP 137
BLAST of Phvul.005G126800.1 vs. DB:Swiss
Match: RLP24_DANRE (Probable ribosome biogenesis protein RLP24 OS=Danio rerio OX=7955 GN=rsl24d1 PE=2 SV=1) HSP 1 Score: 154.836 bits (390), Expect = 1.693e-47 Identity = 75/141 (53.19%), Postives = 104/141 (73.76%), Query Frame = 1 Query: 1 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRVHGKDMTQDSTFEFERKRNRPERYDRNLADNVLKAIPKIEKIRVTREERHHKNRMXXXXXXXXXXXXXXXXQSISLVKAPSVLQ 423 MR+EKC+FCS+ VYPGHG+ FVRND K+FRFCRSKCHKNFK KRNPRK +WTKA+R+ GK++T D++ EFE++RN P +Y+R L ++A+ K+E I+ R+ R NR+K KE + E++++I L+KAP Q Sbjct: 1 MRIEKCYFCSAPVYPGHGMMFVRNDCKVFRFCRSKCHKNFKKKRNPRKTRWTKAFRKSAGKELTVDNSLEFEKRRNTPVKYNRELWSKTVEAMRKVESIKHKRQARFIMNRLKKGKELEKAADISEVKKNIHLIKAPHAGQ 141
BLAST of Phvul.005G126800.1 vs. DB:Swiss
Match: RLP24_PONAB (Probable ribosome biogenesis protein RLP24 OS=Pongo abelii OX=9601 GN=RSL24D1 PE=2 SV=1) HSP 1 Score: 154.836 bits (390), Expect = 2.364e-47 Identity = 72/137 (52.55%), Postives = 106/137 (77.37%), Query Frame = 1 Query: 1 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRVHGKDMTQDSTFEFERKRNRPERYDRNLADNVLKAIPKIEKIRVTREERHHKNRMXXXXXXXXXXXXXXXXQSISLVKAP 411 MR+EKC+FCS +YPGHG+ FVRND K+FRFC+SKCHKNFK +RNPRKV+WTKA+R+ GK++T D++FEFE++RN P +Y R L + + A+ ++E+I+ R+ + NR+K KE + +KE++Q+I L++AP Sbjct: 1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKRRNPRKVRWTKAFRKAAGKELTVDNSFEFEKRRNEPIKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQKVQDIKEVKQNIHLIRAP 137
BLAST of Phvul.005G126800.1 vs. DB:Swiss
Match: RLP24_CANGA (Ribosome biogenesis protein RLP24 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) OX=284593 GN=RLP24 PE=3 SV=1) HSP 1 Score: 155.606 bits (392), Expect = 3.254e-47 Identity = 71/112 (63.39%), Postives = 86/112 (76.79%), Query Frame = 1 Query: 1 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRVHGKDMTQDSTFEFERKRNRPERYDRNLADNVLKAIPKIEKIRVTREERHHKNRM 336 MR+ +C FCSS VYPGHGI FVRNDAK FRFCRSKCHKNFK +RNPRK+KWTKA+R+ GK++ DST F ++RN P RY+R L LKA+ +IE+IR RE +KNRM Sbjct: 1 MRIYQCHFCSSPVYPGHGIMFVRNDAKEFRFCRSKCHKNFKQRRNPRKLKWTKAFRKAAGKELAVDSTLTFAQRRNVPVRYNRELVATTLKAMSRIEEIRQKRERAFYKNRM 112
BLAST of Phvul.005G126800.1 vs. DB:Swiss
Match: RLP24_SCHPO (Ribosome biogenesis protein rlp24 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rlp24 PE=3 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 5.780e-46 Identity = 82/174 (47.13%), Postives = 110/174 (63.22%), Query Frame = 1 Query: 1 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRVHGKDMTQDSTFEF-ERKRNRPERYDRNLADNVLKAIPKIEKIRVTREERHHKNRMXXXXXXXXXXXXXXXXQSISLVKAPSVLQQDPSLTLPKIKVKVSQQQ-----SEENRAMEE 504 MR+ C+FCS VYPGHGI FVRND+K+FRFCRSKCHKNFKMKRNPRKV WTKAYR+ HGK+M D+ +RN P RYDRN+ L A+ ++ ++ RE +K R+ GK+ + L+EA K + Q++ P T P+ +V+ ++ Q S+E MEE Sbjct: 1 MRVHTCYFCSGPVYPGHGIMFVRNDSKVFRFCRSKCHKNFKMKRNPRKVAWTKAYRKAHGKEMVYDTALAVTAARRNVPVRYDRNVIATTLNAMKRVSQVHAKRERLFYKKRLAGKRAQELQEAQKLIAQNV------------PQFTEPEGEVETAEVQEPQIVSDEEYTMEE 162 The following BLAST results are available for this feature:
BLAST of Phvul.005G126800.1 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
Sequences
The
following sequences are available for this feature:
protein sequence of Phvul.005G126800.1_Pv_G19833_v2.1 >Phvul.005G126800.1_Pv_G19833_v2.1 ID=Phvul.005G126800.1_Pv_G19833_v2.1; Name=Phvul.005G126800.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=169bpback to top mRNA from alignment at Chr05:36442278..36444057- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Phvul.005G126800.1_Pv_G19833_v2.1 ID=Phvul.005G126800.1_Pv_G19833_v2.1; Name=Phvul.005G126800.1; organism=Phaseolus vulgaris; type=mRNA; length=1780bp; location=Sequence derived from: Chr05:36442278..36444057- (Phaseolus vulgarisback to top Coding sequence (CDS) from alignment at Chr05:36442278..36444057- >Phvul.005G126800.1_Pv_G19833_v2.1 ID=Phvul.005G126800.1_Pv_G19833_v2.1; Name=Phvul.005G126800.1; organism=Phaseolus vulgaris; type=CDS; length=507bp; location=Sequence derived from: Chr05:36442278..36444057- (Phaseolus vulgarisback to top |