Phvul.005G127700.1

Transcript Overview
NamePhvul.005G127700.1
Unique NamePhvul.005G127700.1_Pv_G19833_v2.1
TypemRNA
OrganismPhaseolus vulgaris (Common bean)
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr05supercontigChr05:36534444..36537421 -Phaseolus vulgaris G19833 genome v2.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Phaseolus vulgaris G19833 genome v2.12019-09-17
InterProScan: Phaseolus vulgaris G19833 genome v2.12019-10-18
BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot2019-10-18
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
pvpvL016Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvpvL108Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pspvL467Pisum sativum Cameor genome v1aPisum sativum
pspvL477Pisum sativum Cameor genome v1aPisum sativum
pvvuR472Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pvvuR481Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pvvuR493Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caipvL0050Cicer arietinum ICC 4958 genome v2Cicer arietinum
caipvL0289Cicer arietinum ICC 4958 genome v2Cicer arietinum
crpvL075Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
capvL043Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
crpvL274Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
caipvL0837Cicer arietinum ICC 4958 genome v2Cicer arietinum
capvL233Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
capvL621Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccpvL0464Cajanus cajan Asha genome v1.0Cajanus cajan
ccpvL1033Cajanus cajan Asha genome v1.0Cajanus cajan
anpvL0149Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0334Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0665Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0780Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0871Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL1030Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL1040Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL1169Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL1224Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL1302Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
aspvL156Vigna angularis Jingnong 6 genome v1.1Vigna angularis
aspvL691Vigna angularis Jingnong 6 genome v1.1Vigna angularis
pvzwsR469Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvzwsR483Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvzwsR485Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvvfhR481Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvvfhR510Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvvfhR523Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvvfhR527Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvtifR478Vicia faba cv. Tiffany genome v1.0Vicia faba
pvtifR523Vicia faba cv. Tiffany genome v1.0Vicia faba
pvvrvR448Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvrvR457Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvuaR408Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvuaR417Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvuaR429Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvssR535Vicia sativa cv. Studenica genome v1.0Vicia sativa
pvvssR556Vicia sativa cv. Studenica genome v1.0Vicia sativa
pvvssR582Vicia sativa cv. Studenica genome v1.0Vicia sativa
pvvssR599Vicia sativa cv. Studenica genome v1.0Vicia sativa
canpvL037Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canpvL215Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canpvL604Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjpvL090Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjpvL505Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjpvL669Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carpvL053Cicer arietinum
carpvL223Cicer arietinum
carpvL336Cicer arietinum
carpvL598Cicer arietinum
ccapvL124Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapvL379Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapvL482Cajanus cajan cv. Asha genome v2.0Cajanus cajan
pvvumR534Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvumR537Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvumR558Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvvaR516Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvvaR517Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvasR531Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvasR535Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvasR559Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvstR532Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvvstR536Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvvstR561Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvpvfR429Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR444Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR457Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR473Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvvunR439Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
pvvunR444Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
pvvunR456Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
Cc_v2.0_07861.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Vfaba.Tiffany.R1.1g045440.1Vicia faba cv. Tiffany genome v1.0Vicia faba
rna-KK1_026360Cajanus cajan Asha genome v1.0Cajanus cajan
Va03G074250.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vigst.07G052700.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
rna-TanjilR_19776Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vigun01g169100.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Cr_01313.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
rna-TanjilR_17101Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vigst.04G219900.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Vfaba.Hedin2.R1.1g065120.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Vum_04G02470.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Vigun01g169100.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Ca_07824.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Ca_00762Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Vigan.07G069700.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Vfaba.Hedin2.R1.5g145680.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
rna-XM_004494083.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
rna-TanjilR_30893Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vigun05g240600.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
evm.model.Chr01.1618Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
jg31844.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Ca_07023Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Vigun05g240600.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Cr_05365.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
rna-XM_004487477.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
rna-TanjilR_04337Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Psat05G0715500-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
rna-TanjilR_20473Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-XM_014642714.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
rna-TanjilR_28567Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vigan.04G340100.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
evm.model.Chr05.2280Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Va05G048730.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
XM_058917742.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Vum_07G00562.1Vigna umbellata FF25 genome v1.0Vigna umbellata
jg44269.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
LR48_mrnaVigan05g172300Vigna angularis Jingnong 6 genome v1.1Vigna angularis
rna-TanjilR_23632Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Phvul.001G186200.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
PvulFLAVERTChr05.1000935Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
PvulFLAVERTChr01.1200Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Phvul.005G127700Phvul.005G127700_Pv_G19833_v2.1Phaseolus vulgarisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Phvul.005G127700.1Phvul.005G127700.1_Pv_G19833_v2.1-proteinPhaseolus vulgarispolypeptide
Phvul.005G127700.1_Pv_G19833_v2.1Phvul.005G127700.1_Pv_G19833_v2.1Phaseolus vulgarispolypeptide


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.005G127700.1.v2.1.three_prime_UTR.2Phvul.005G127700.1.v2.1.three_prime_UTR.2_Pv_G19833_v2.1Phaseolus vulgaristhree_prime_UTR
Phvul.005G127700.1.v2.1.three_prime_UTR.1Phvul.005G127700.1.v2.1.three_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgaristhree_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.005G127700.1.v2.1.CDS.4Phvul.005G127700.1.v2.1.CDS.4_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.005G127700.1.v2.1.CDS.3Phvul.005G127700.1.v2.1.CDS.3_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.005G127700.1.v2.1.CDS.2Phvul.005G127700.1.v2.1.CDS.2_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.005G127700.1.v2.1.CDS.1Phvul.005G127700.1.v2.1.CDS.1_Pv_G19833_v2.1Phaseolus vulgarisCDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.005G127700.1.v2.1.five_prime_UTR.1Phvul.005G127700.1.v2.1.five_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgarisfive_prime_UTR


Homology
BLAST of Phvul.005G127700.1 vs. DB:Swiss
Match: U2AFA_ORYSJ (Splicing factor U2af small subunit A OS=Oryza sativa subsp. japonica OX=39947 GN=U2AF35A PE=2 SV=1)

HSP 1 Score: 336.265 bits (861), Expect = 6.978e-115
Identity = 152/186 (81.72%), Postives = 172/186 (92.47%), Query Frame = 1
Query:    1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLANMYQRPDMITPGVDAHGHPIDPRKIQDHFQEFYEDLFEELSKYGEIESLNVCDNLADHMVGNVYVQFREEEHAANAVRNLAGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRLQLFG 558
            MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH KPS+SPT+LL+NMY RPDMITPG+DA G+PIDP KIQ  F++FYED+FEELSKYGEIESL+VCDN ADHM+GNVYVQFREE+ AA A++ L GR+Y+GRPIIV+FSPV+DFREATCRQYEEN+CNRGGYCNFMH+K I RDLR +LFG
Sbjct:    1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNKPSVSPTLLLSNMYLRPDMITPGIDAQGNPIDPEKIQADFEDFYEDIFEELSKYGEIESLHVCDNFADHMIGNVYVQFREEDQAARALQALTGRYYSGRPIIVEFSPVSDFREATCRQYEENSCNRGGYCNFMHVKEIGRDLRKRLFG 186          
BLAST of Phvul.005G127700.1 vs. DB:Swiss
Match: U2AFB_ARATH (Splicing factor U2af small subunit B OS=Arabidopsis thaliana OX=3702 GN=U2AF35B PE=1 SV=1)

HSP 1 Score: 334.724 bits (857), Expect = 2.247e-114
Identity = 153/186 (82.26%), Postives = 175/186 (94.09%), Query Frame = 1
Query:    1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLANMYQRPDMITPGVDAHGHPIDPRKIQDHFQEFYEDLFEELSKYGEIESLNVCDNLADHMVGNVYVQFREEEHAANAVRNLAGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRLQLFG 558
            MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPT+LL+NMYQRPDMITPGVD  G P+DP KIQDHF++FYED+FEEL+K+GE+ESLNVCDNLADHM+GNVYV F+EE+HAA A++ L GRFY+GRPII DFSPVTDFREATCRQYEEN+CNRGGYCNFMH+K+ISR+LR +LFG
Sbjct:    1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEEDHAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQISRELRRKLFG 186          
BLAST of Phvul.005G127700.1 vs. DB:Swiss
Match: U2AFB_ORYSJ (Splicing factor U2af small subunit B OS=Oryza sativa subsp. japonica OX=39947 GN=U2AF35B PE=2 SV=1)

HSP 1 Score: 334.339 bits (856), Expect = 7.596e-114
Identity = 148/185 (80.00%), Postives = 172/185 (92.97%), Query Frame = 1
Query:    1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLANMYQRPDMITPGVDAHGHPIDPRKIQDHFQEFYEDLFEELSKYGEIESLNVCDNLADHMVGNVYVQFREEEHAANAVRNLAGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRLQLF 555
            MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P++SPTI+LANMYQRPDMITPGVDA G PIDP K+Q+HF++FYED++EELSK+GE+E+LNVCDNLADHM+GNVYVQFREEE A  A   L GRFY+GRPIIV++SPVTDFREATCRQ+EEN+CNRGGYCNFMH+K+I R+LR +L+
Sbjct:    1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTVSPTIVLANMYQRPDMITPGVDAQGQPIDPEKMQEHFEDFYEDIYEELSKFGEVETLNVCDNLADHMIGNVYVQFREEEQAVAAHNALQGRFYSGRPIIVEYSPVTDFREATCRQFEENSCNRGGYCNFMHVKQIGRELRRKLY 185          
BLAST of Phvul.005G127700.1 vs. DB:Swiss
Match: U2AFA_ARATH (Splicing factor U2af small subunit A OS=Arabidopsis thaliana OX=3702 GN=U2AF35A PE=1 SV=1)

HSP 1 Score: 332.028 bits (850), Expect = 3.999e-113
Identity = 152/185 (82.16%), Postives = 173/185 (93.51%), Query Frame = 1
Query:    1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLANMYQRPDMITPGVDAHGHPIDPRKIQDHFQEFYEDLFEELSKYGEIESLNVCDNLADHMVGNVYVQFREEEHAANAVRNLAGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRLQLF 555
            MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPT+LL+NMYQRPDMITPGVDA G P+DPRKIQ+HF++F+EDLFEEL K+GEIESLN+CDNLADHM+GNVYVQF+EE+ AA A++ L GRFY+GRPII DFSPVTDFREATCRQYEEN CNRGGYCNFMH+K +SR+LR +LF
Sbjct:    1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQFKEEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKLVSRELRRKLF 185          
BLAST of Phvul.005G127700.1 vs. DB:Swiss
Match: U2AF1_BOVIN (Splicing factor U2AF 35 kDa subunit OS=Bos taurus OX=9913 GN=U2AF1 PE=2 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.023e-78
Identity = 113/186 (60.75%), Postives = 141/186 (75.81%), Query Frame = 1
Query:    1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLANMYQRPDMITPGVDAHGHPIDPRKIQDHFQEFYEDLFEELS-KYGEIESLNVCDNLADHMVGNVYVQFREEEHAANAVRNLAGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRLQLF 555
            MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLH KP+ S TI L N+Y+ P   +   D     +   ++Q+H+ EF+E++F E+  KYGE+E +NVCDNL DH+VGNVYV+FR EE A  AV +L  R++ G+PI  + SPVTDFREA CRQYE   C RGG+CNFMHLK ISR+LR +L+
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELY 186          
BLAST of Phvul.005G127700.1 vs. DB:Swiss
Match: U2AF1_MOUSE (Splicing factor U2AF 35 kDa subunit OS=Mus musculus OX=10090 GN=U2af1 PE=1 SV=4)

HSP 1 Score: 242.662 bits (618), Expect = 1.092e-78
Identity = 113/186 (60.75%), Postives = 141/186 (75.81%), Query Frame = 1
Query:    1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLANMYQRPDMITPGVDAHGHPIDPRKIQDHFQEFYEDLFEELS-KYGEIESLNVCDNLADHMVGNVYVQFREEEHAANAVRNLAGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRLQLF 555
            MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLH KP+ S TI L N+Y+ P   +   D     +   ++Q+H+ EF+E++F E+  KYGE+E +NVCDNL DH+VGNVYV+FR EE A  AV +L  R++ G+PI  + SPVTDFREA CRQYE   C RGG+CNFMHLK ISR+LR +L+
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELY 186          
BLAST of Phvul.005G127700.1 vs. DB:Swiss
Match: U2AF5_HUMAN (Splicing factor U2AF 35 kDa subunit-like protein OS=Homo sapiens OX=9606 GN=U2AF1L5 PE=1 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.128e-78
Identity = 113/186 (60.75%), Postives = 141/186 (75.81%), Query Frame = 1
Query:    1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLANMYQRPDMITPGVDAHGHPIDPRKIQDHFQEFYEDLFEELS-KYGEIESLNVCDNLADHMVGNVYVQFREEEHAANAVRNLAGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRLQLF 555
            MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLH KP+ S TI L N+Y+ P   +   D     +   ++Q+H+ EF+E++F E+  KYGE+E +NVCDNL DH+VGNVYV+FR EE A  AV +L  R++ G+PI  + SPVTDFREA CRQYE   C RGG+CNFMHLK ISR+LR +L+
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELY 186          
BLAST of Phvul.005G127700.1 vs. DB:Swiss
Match: U2AF1_HUMAN (Splicing factor U2AF 35 kDa subunit OS=Homo sapiens OX=9606 GN=U2AF1 PE=1 SV=3)

HSP 1 Score: 242.662 bits (618), Expect = 1.128e-78
Identity = 113/186 (60.75%), Postives = 141/186 (75.81%), Query Frame = 1
Query:    1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLANMYQRPDMITPGVDAHGHPIDPRKIQDHFQEFYEDLFEELS-KYGEIESLNVCDNLADHMVGNVYVQFREEEHAANAVRNLAGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRLQLF 555
            MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLH KP+ S TI L N+Y+ P   +   D     +   ++Q+H+ EF+E++F E+  KYGE+E +NVCDNL DH+VGNVYV+FR EE A  AV +L  R++ G+PI  + SPVTDFREA CRQYE   C RGG+CNFMHLK ISR+LR +L+
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELY 186          
BLAST of Phvul.005G127700.1 vs. DB:Swiss
Match: U2AF4_RAT (Splicing factor U2AF 26 kDa subunit OS=Rattus norvegicus OX=10116 GN=U2af1l4 PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 3.605e-78
Identity = 112/188 (59.57%), Postives = 140/188 (74.47%), Query Frame = 1
Query:    1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLANMYQRPDMITPGVDAHGHPIDPRKIQDHFQEFYEDLFEELS-KYGEIESLNVCDNLADHMVGNVYVQFREEEHAANAVRNLAGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRLQLFGK 561
            MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLH KP+ S TI+L N+Y+ P       D     +   ++Q+H+  F+E++F EL  KYGEIE +NVCDNL DH+VGNVYV+FR EE A  AV  L  R++ G+ +  + SPVTDFRE+ CRQYE   C RGG+CNFMHL+ ISR+LR QL+G+
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSHCHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVAELNNRWFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISRNLRRQLYGR 188          
BLAST of Phvul.005G127700.1 vs. DB:Swiss
Match: U2AF4_MOUSE (Splicing factor U2AF 26 kDa subunit OS=Mus musculus OX=10090 GN=U2af1l4 PE=1 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 3.605e-78
Identity = 112/188 (59.57%), Postives = 140/188 (74.47%), Query Frame = 1
Query:    1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLANMYQRPDMITPGVDAHGHPIDPRKIQDHFQEFYEDLFEELS-KYGEIESLNVCDNLADHMVGNVYVQFREEEHAANAVRNLAGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRLQLFGK 561
            MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLH KP+ S TI+L N+Y+ P       D     +   ++Q+H+  F+E++F EL  KYGEIE +NVCDNL DH+VGNVYV+FR EE A  AV  L  R++ G+ +  + SPVTDFRE+ CRQYE   C RGG+CNFMHL+ ISR+LR QL+G+
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSHCHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVAELNNRWFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISRNLRRQLYGR 188          
The following BLAST results are available for this feature:
BLAST of Phvul.005G127700.1 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
U2AFA_ORYSJ6.978e-11581.72Splicing factor U2af small subunit A OS=Oryza sati... [more]
U2AFB_ARATH2.247e-11482.26Splicing factor U2af small subunit B OS=Arabidopsi... [more]
U2AFB_ORYSJ7.596e-11480.00Splicing factor U2af small subunit B OS=Oryza sati... [more]
U2AFA_ARATH3.999e-11382.16Splicing factor U2af small subunit A OS=Arabidopsi... [more]
U2AF1_BOVIN1.023e-7860.75Splicing factor U2AF 35 kDa subunit OS=Bos taurus ... [more]
U2AF1_MOUSE1.092e-7860.75Splicing factor U2AF 35 kDa subunit OS=Mus musculu... [more]
U2AF5_HUMAN1.128e-7860.75Splicing factor U2AF 35 kDa subunit-like protein O... [more]
U2AF1_HUMAN1.128e-7860.75Splicing factor U2AF 35 kDa subunit OS=Homo sapien... [more]
U2AF4_RAT3.605e-7859.57Splicing factor U2AF 26 kDa subunit OS=Rattus norv... [more]
U2AF4_MOUSE3.605e-7859.57Splicing factor U2AF 26 kDa subunit OS=Mus musculu... [more]
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InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009145U2 auxiliary factor small subunitPRINTSPR01848U2AUXFACTORcoord: 103..125
score: 64.82
coord: 18..37
score: 85.68
coord: 37..57
score: 54.55
coord: 130..154
score: 61.82
coord: 75..90
score: 51.14
coord: 165..177
score: 66.78
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 45..142
e-value: 0.009
score: 24.8
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 83..139
e-value: 1.3E-6
score: 28.1
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 44..146
score: 11.366
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 148..174
e-value: 0.13
score: 21.4
coord: 13..39
e-value: 0.0065
score: 25.7
IPR000571Zinc finger, CCCH-typePFAMPF00642zf-CCCHcoord: 14..37
e-value: 4.9E-7
score: 29.5
coord: 150..173
e-value: 8.4E-5
score: 22.4
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 148..175
score: 11.122
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 12..40
score: 13.112
IPR003954RNA recognition motif domain, eukaryoteSMARTSM00361rrm2_1coord: 73..142
e-value: 1.7E-6
score: 37.6
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 43..144
e-value: 6.0E-32
score: 112.1
NoneNo IPR availableGENE3D4.10.1000.10coord: 145..205
e-value: 5.1E-5
score: 25.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 247..285
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 223..246
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 187..308
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 287..308
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 197..222
NoneNo IPR availableCDDcd12539RRM_U2AF35Bcoord: 44..145
e-value: 1.73632E-65
score: 199.127
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 77..149

Sequences
The following sequences are available for this feature:

protein sequence of Phvul.005G127700.1_Pv_G19833_v2.1

>Phvul.005G127700.1_Pv_G19833_v2.1 ID=Phvul.005G127700.1_Pv_G19833_v2.1; Name=Phvul.005G127700.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=309bp
MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLAN
MYQRPDMITPGVDAHGHPIDPRKIQDHFQEFYEDLFEELSKYGEIESLNV
CDNLADHMVGNVYVQFREEEHAANAVRNLAGRFYAGRPIIVDFSPVTDFR
EATCRQYEENTCNRGGYCNFMHLKRISRDLRLQLFGKHSRSRSRSPYRHR
SHEDRSHRSHSRKYDDRDHHHESRSRRHKSTSPEHRRGRSPGRRRHRSPV
RDGSEERRARIEQWNREKEEQDPGKKTKAEDIDIGNSGRSRNASRFHGQE
QQSPNEEY*
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mRNA from alignment at Chr05:36534444..36537421-

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Phvul.005G127700.1_Pv_G19833_v2.1 ID=Phvul.005G127700.1_Pv_G19833_v2.1; Name=Phvul.005G127700.1; organism=Phaseolus vulgaris; type=mRNA; length=2978bp; location=Sequence derived from: Chr05:36534444..36537421- (Phaseolus vulgaris
TAAGAATACAGAAGAGAGAATTGTAGTTGGAAATTATCATGTATTTGAAT TGACTGGAAGGACACCCAAACACAACCTTCACTTTTATTCGAAATTAAAT TTAAAGAAGTATCTAGAAAGATTCTTCTATAAGCCTTCTACCCATTACTA CAAATCCCCAATTTCTGAAACCCTAGGCAGCAACAAAGAGAAGAAGTAAA ACGGCATCTGAACCGTGTGGTTGCGGCAATGGCGGAGCATCTGGCATCGA TATTCGGGACGGAGAAGGACAGGGTGAATTGCCCGTTCTACTTCAAGATC GGCGCGTGTAGGCACGGAGATCGCTGCTCTCGCCTCCACACGAAGCCCAG CATAAGCCCCACCATTCTGCTCGCCAACATGTACCAGCGCCCCGACATGA TAACCCCCGGCGTCGACGCCCACGGCCACCCCATCGACCCTCGCAAGATC CAGGACCACTTTCAGGAGTTCTATGAGGATCTCTTCGAGGAGCTCTCCAA GTACGGCGAAATCGAAAGCCTCAATGTCTGCGACAACCTCGCCGATCACA TGGTATGTGCCCTCACCCTAACCCTAATCCCAACCCCTCGCTTTGTCCAT TTTTGTTAGAATTGAACGCTGTCGTTTTCAGGTGGGGAATGTGTACGTTC AGTTCAGAGAGGAGGAGCATGCTGCCAATGCTGTTAGGAACCTCGCTGGA AGGTTTTATGCCGGTTAGTTATCTCCTTAACTTTTGGTTCTCTGCAATTT CTCATTCATTCTGTATTTATGAGCTTCATCAATGCACGACGTTCTTTCTC CTTAATTTAAATATTGAGGTGTTTTAGTGGTTTGTATGGGTGCAGGTAGG CCAATTATCGTGGATTTTTCGCCGGTGACGGATTTTCGAGAAGCTACATG CAGGCAGTACGAGGAGAATACTTGCAACCGCGGTGGTTATTGTAACTTCA TGCATTTGAAAAGAATTAGCAGGTAAAACTTTGGCTTTGGTGTTTAGTTT TTTTTGTTTTTTTTTTTTTCTTGAAGGTGGTGGTGTTTGTTGCTTACATG TGTTAGTAGAAAAACTCAGTATAAAAATCCAATTCAAAAGCCATTTAAGT TGCTTCAACCCAAAACGAATTATAGACTGGATCAATTCTTGAATATCAAA TTGAACATGCGAACATTTGCCTTTGATCATGGTAGCGAATATTTCAATGT GATTCTGGACCATCTTGTGTGAATCCAAACATGCTATAAAATTTAAAGCT TATATTTGTCTGATCCATGTTATATACAGGGATTTGAGACTCCAGTTATT TGGAAAGCACAGCAGAAGCAGAAGCAGGAGTCCTTACAGGCATCGGAGCC ATGAGGATCGGTCCCATCGTAGTCATAGCAGAAAGTATGATGACAGGGAC CACCATCATGAGAGTCGCAGCAGGAGACACAAGAGCACGAGCCCTGAACA TAGGAGAGGAAGAAGTCCTGGACGGAGGAGGCACCGCAGTCCAGTTAGAG ATGGCAGTGAGGAGAGGCGCGCCAGAATTGAGCAGTGGAACAGGGAGAAG GAAGAGCAAGATCCTGGAAAGAAGACTAAAGCAGAGGACATCGACATTGG TAACAGTGGCCGGTCTCGGAATGCTAGCAGATTTCATGGGCAGGAACAGC AATCTCCAAATGAGGAATATTGATCTGTTTTTGTTGTTACGGTTTGTGTT CTATCCCTTTTGTTTGCGTATTCATTTAGAACTAGGCAGGATATTTTATT CTAGAGCAGTGGAACAGGGAGAAGACCACAGCTCACCACCCATTTTCCAC TGTGCAGGTGGTGCAGGTGCACTTCTCTAATATATGGAATGTGTTCCATT CTTCCTCCCTCCCTTTCTTTTACTTTTTGGATTTTCCATTTTTTAATAGA CATGTGGATGTTTTTCCAATTTATCTAGGTTATTCATAACGTTTCACTGT TTGTGCAACTTACGTAGGTTATTCACAGCATTTCATTGTTTTTAACAATC TTTCTGCATTATTTGATCACTCTTCAGTATAGAATGTACTAAAAATACTG ATCAGCTGAACCCTTTTGTTGTTTCTACTATATGTACGAAGGTCAGCTAA AAACTTGTGCATATTTGCTTTTTCCTTCTTTGTTGTTCCTACAAGTGTCT TATAATTCCCCTAGCCAAGAATTTTTTTTTGGATCTATGAAAATAGTTGT TTTGCTGTCATTCAATCCATCCCTGTTTCACAGATTTCAAAATAGCCTTA CGGCATTCTAGCTAATATAGTCCTTTAAAATATAGCCTCCTCTTGTTGAG TAGAGTTTTGTAACTTTTTCCATGGTCCTCTTCTGTCATTAGAAAATGGA CGTCCTTTTTCTCAAGTGCTTAATTGTTCAAATTCATCGGGTCTCACTCT TGTTTAATGTATGCATCACTTTACAGTCAGGTACACTAACCAACATCATA AACGAAGACTAATGAACGACCAGTTTCAACTCTTTCATAGGGTTTATTTT ATTTTATTTCAATTAGTTCTTTTTTTTGTTTTGCCTCATAGAAAATTGAA AAATTTAAACAGTATGATGTTACGTTGTTATGAGTTTTGCAGGTTCAGGT ATCCCTGCATCTAAAGAAACAAGCACTTTTGTTAATTCCAGTTTACCATG GAATGTGTACAGGTTCATTCTTCTTGGTATGCTCTTTGGAGGATGTTTTA ATGGGTCTTGAGCTGGCAACTAATCGTGTAGGAGTAGGATGAATTTGTAA GAGAGAACTTCTCTCATTTGCAGGCTGAGGAAGATGCTTTTCTTTTCTTT TTTGGCAGATTAGTATGTGTTTATCCTTTAGATATCTGGTACCCACCTTT CAACTTAATTTTCCGCCGTTTGTAAATTGTTTCTTTTATGATACAGCTCT CAGACACCAAAACACTATCGCCGAACAGAATGAGGAAAATTGCTTTATTA TATATCTATATCTTTTATGCAAGGGAGT
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Coding sequence (CDS) from alignment at Chr05:36534444..36537421-

>Phvul.005G127700.1_Pv_G19833_v2.1 ID=Phvul.005G127700.1_Pv_G19833_v2.1; Name=Phvul.005G127700.1; organism=Phaseolus vulgaris; type=CDS; length=927bp; location=Sequence derived from: Chr05:36534444..36537421- (Phaseolus vulgaris
ATGGCGGAGCATCTGGCATCGATATTCGGGACGGAGAAGGACAGGGTGAA
TTGCCCGTTCTACTTCAAGATCGGCGCGTGTAGGCACGGAGATCGCTGCT
CTCGCCTCCACACGAAGCCCAGCATAAGCCCCACCATTCTGCTCGCCAAC
ATGTACCAGCGCCCCGACATGATAACCCCCGGCGTCGACGCCCACGGCCA
CCCCATCGACCCTCGCAAGATCCAGGACCACTTTCAGGAGTTCTATGAGG
ATCTCTTCGAGGAGCTCTCCAAGTACGGCGAAATCGAAAGCCTCAATGTC
TGCGACAACCTCGCCGATCACATGGTGGGGAATGTGTACGTTCAGTTCAG
AGAGGAGGAGCATGCTGCCAATGCTGTTAGGAACCTCGCTGGAAGGTTTT
ATGCCGGTAGGCCAATTATCGTGGATTTTTCGCCGGTGACGGATTTTCGA
GAAGCTACATGCAGGCAGTACGAGGAGAATACTTGCAACCGCGGTGGTTA
TTGTAACTTCATGCATTTGAAAAGAATTAGCAGGGATTTGAGACTCCAGT
TATTTGGAAAGCACAGCAGAAGCAGAAGCAGGAGTCCTTACAGGCATCGG
AGCCATGAGGATCGGTCCCATCGTAGTCATAGCAGAAAGTATGATGACAG
GGACCACCATCATGAGAGTCGCAGCAGGAGACACAAGAGCACGAGCCCTG
AACATAGGAGAGGAAGAAGTCCTGGACGGAGGAGGCACCGCAGTCCAGTT
AGAGATGGCAGTGAGGAGAGGCGCGCCAGAATTGAGCAGTGGAACAGGGA
GAAGGAAGAGCAAGATCCTGGAAAGAAGACTAAAGCAGAGGACATCGACA
TTGGTAACAGTGGCCGGTCTCGGAATGCTAGCAGATTTCATGGGCAGGAA
CAGCAATCTCCAAATGAGGAATATTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR009145U2AF_small
IPR000504RRM_dom
IPR000571Znf_CCCH
IPR003954RRM_dom_euk
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003676nucleic acid binding
GO:0046872metal ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0089701U2AF complex