Phvul.005G127700.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Phvul.005G127700.1 vs. DB:Swiss
Match: U2AFA_ORYSJ (Splicing factor U2af small subunit A OS=Oryza sativa subsp. japonica OX=39947 GN=U2AF35A PE=2 SV=1) HSP 1 Score: 336.265 bits (861), Expect = 6.978e-115 Identity = 152/186 (81.72%), Postives = 172/186 (92.47%), Query Frame = 1 Query: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLANMYQRPDMITPGVDAHGHPIDPRKIQDHFQEFYEDLFEELSKYGEIESLNVCDNLADHMVGNVYVQFREEEHAANAVRNLAGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRLQLFG 558 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH KPS+SPT+LL+NMY RPDMITPG+DA G+PIDP KIQ F++FYED+FEELSKYGEIESL+VCDN ADHM+GNVYVQFREE+ AA A++ L GR+Y+GRPIIV+FSPV+DFREATCRQYEEN+CNRGGYCNFMH+K I RDLR +LFG Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNKPSVSPTLLLSNMYLRPDMITPGIDAQGNPIDPEKIQADFEDFYEDIFEELSKYGEIESLHVCDNFADHMIGNVYVQFREEDQAARALQALTGRYYSGRPIIVEFSPVSDFREATCRQYEENSCNRGGYCNFMHVKEIGRDLRKRLFG 186
BLAST of Phvul.005G127700.1 vs. DB:Swiss
Match: U2AFB_ARATH (Splicing factor U2af small subunit B OS=Arabidopsis thaliana OX=3702 GN=U2AF35B PE=1 SV=1) HSP 1 Score: 334.724 bits (857), Expect = 2.247e-114 Identity = 153/186 (82.26%), Postives = 175/186 (94.09%), Query Frame = 1 Query: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLANMYQRPDMITPGVDAHGHPIDPRKIQDHFQEFYEDLFEELSKYGEIESLNVCDNLADHMVGNVYVQFREEEHAANAVRNLAGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRLQLFG 558 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPT+LL+NMYQRPDMITPGVD G P+DP KIQDHF++FYED+FEEL+K+GE+ESLNVCDNLADHM+GNVYV F+EE+HAA A++ L GRFY+GRPII DFSPVTDFREATCRQYEEN+CNRGGYCNFMH+K+ISR+LR +LFG Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEEDHAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQISRELRRKLFG 186
BLAST of Phvul.005G127700.1 vs. DB:Swiss
Match: U2AFB_ORYSJ (Splicing factor U2af small subunit B OS=Oryza sativa subsp. japonica OX=39947 GN=U2AF35B PE=2 SV=1) HSP 1 Score: 334.339 bits (856), Expect = 7.596e-114 Identity = 148/185 (80.00%), Postives = 172/185 (92.97%), Query Frame = 1 Query: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLANMYQRPDMITPGVDAHGHPIDPRKIQDHFQEFYEDLFEELSKYGEIESLNVCDNLADHMVGNVYVQFREEEHAANAVRNLAGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRLQLF 555 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P++SPTI+LANMYQRPDMITPGVDA G PIDP K+Q+HF++FYED++EELSK+GE+E+LNVCDNLADHM+GNVYVQFREEE A A L GRFY+GRPIIV++SPVTDFREATCRQ+EEN+CNRGGYCNFMH+K+I R+LR +L+ Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTVSPTIVLANMYQRPDMITPGVDAQGQPIDPEKMQEHFEDFYEDIYEELSKFGEVETLNVCDNLADHMIGNVYVQFREEEQAVAAHNALQGRFYSGRPIIVEYSPVTDFREATCRQFEENSCNRGGYCNFMHVKQIGRELRRKLY 185
BLAST of Phvul.005G127700.1 vs. DB:Swiss
Match: U2AFA_ARATH (Splicing factor U2af small subunit A OS=Arabidopsis thaliana OX=3702 GN=U2AF35A PE=1 SV=1) HSP 1 Score: 332.028 bits (850), Expect = 3.999e-113 Identity = 152/185 (82.16%), Postives = 173/185 (93.51%), Query Frame = 1 Query: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLANMYQRPDMITPGVDAHGHPIDPRKIQDHFQEFYEDLFEELSKYGEIESLNVCDNLADHMVGNVYVQFREEEHAANAVRNLAGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRLQLF 555 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPT+LL+NMYQRPDMITPGVDA G P+DPRKIQ+HF++F+EDLFEEL K+GEIESLN+CDNLADHM+GNVYVQF+EE+ AA A++ L GRFY+GRPII DFSPVTDFREATCRQYEEN CNRGGYCNFMH+K +SR+LR +LF Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQFKEEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKLVSRELRRKLF 185
BLAST of Phvul.005G127700.1 vs. DB:Swiss
Match: U2AF1_BOVIN (Splicing factor U2AF 35 kDa subunit OS=Bos taurus OX=9913 GN=U2AF1 PE=2 SV=1) HSP 1 Score: 242.662 bits (618), Expect = 1.023e-78 Identity = 113/186 (60.75%), Postives = 141/186 (75.81%), Query Frame = 1 Query: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLANMYQRPDMITPGVDAHGHPIDPRKIQDHFQEFYEDLFEELS-KYGEIESLNVCDNLADHMVGNVYVQFREEEHAANAVRNLAGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRLQLF 555 MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLH KP+ S TI L N+Y+ P + D + ++Q+H+ EF+E++F E+ KYGE+E +NVCDNL DH+VGNVYV+FR EE A AV +L R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LR +L+ Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELY 186
BLAST of Phvul.005G127700.1 vs. DB:Swiss
Match: U2AF1_MOUSE (Splicing factor U2AF 35 kDa subunit OS=Mus musculus OX=10090 GN=U2af1 PE=1 SV=4) HSP 1 Score: 242.662 bits (618), Expect = 1.092e-78 Identity = 113/186 (60.75%), Postives = 141/186 (75.81%), Query Frame = 1 Query: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLANMYQRPDMITPGVDAHGHPIDPRKIQDHFQEFYEDLFEELS-KYGEIESLNVCDNLADHMVGNVYVQFREEEHAANAVRNLAGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRLQLF 555 MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLH KP+ S TI L N+Y+ P + D + ++Q+H+ EF+E++F E+ KYGE+E +NVCDNL DH+VGNVYV+FR EE A AV +L R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LR +L+ Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELY 186
BLAST of Phvul.005G127700.1 vs. DB:Swiss
Match: U2AF5_HUMAN (Splicing factor U2AF 35 kDa subunit-like protein OS=Homo sapiens OX=9606 GN=U2AF1L5 PE=1 SV=1) HSP 1 Score: 242.662 bits (618), Expect = 1.128e-78 Identity = 113/186 (60.75%), Postives = 141/186 (75.81%), Query Frame = 1 Query: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLANMYQRPDMITPGVDAHGHPIDPRKIQDHFQEFYEDLFEELS-KYGEIESLNVCDNLADHMVGNVYVQFREEEHAANAVRNLAGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRLQLF 555 MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLH KP+ S TI L N+Y+ P + D + ++Q+H+ EF+E++F E+ KYGE+E +NVCDNL DH+VGNVYV+FR EE A AV +L R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LR +L+ Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELY 186
BLAST of Phvul.005G127700.1 vs. DB:Swiss
Match: U2AF1_HUMAN (Splicing factor U2AF 35 kDa subunit OS=Homo sapiens OX=9606 GN=U2AF1 PE=1 SV=3) HSP 1 Score: 242.662 bits (618), Expect = 1.128e-78 Identity = 113/186 (60.75%), Postives = 141/186 (75.81%), Query Frame = 1 Query: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLANMYQRPDMITPGVDAHGHPIDPRKIQDHFQEFYEDLFEELS-KYGEIESLNVCDNLADHMVGNVYVQFREEEHAANAVRNLAGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRLQLF 555 MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLH KP+ S TI L N+Y+ P + D + ++Q+H+ EF+E++F E+ KYGE+E +NVCDNL DH+VGNVYV+FR EE A AV +L R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LR +L+ Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELY 186
BLAST of Phvul.005G127700.1 vs. DB:Swiss
Match: U2AF4_RAT (Splicing factor U2AF 26 kDa subunit OS=Rattus norvegicus OX=10116 GN=U2af1l4 PE=2 SV=1) HSP 1 Score: 240.35 bits (612), Expect = 3.605e-78 Identity = 112/188 (59.57%), Postives = 140/188 (74.47%), Query Frame = 1 Query: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLANMYQRPDMITPGVDAHGHPIDPRKIQDHFQEFYEDLFEELS-KYGEIESLNVCDNLADHMVGNVYVQFREEEHAANAVRNLAGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRLQLFGK 561 MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLH KP+ S TI+L N+Y+ P D + ++Q+H+ F+E++F EL KYGEIE +NVCDNL DH+VGNVYV+FR EE A AV L R++ G+ + + SPVTDFRE+ CRQYE C RGG+CNFMHL+ ISR+LR QL+G+ Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSHCHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVAELNNRWFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISRNLRRQLYGR 188
BLAST of Phvul.005G127700.1 vs. DB:Swiss
Match: U2AF4_MOUSE (Splicing factor U2AF 26 kDa subunit OS=Mus musculus OX=10090 GN=U2af1l4 PE=1 SV=1) HSP 1 Score: 240.35 bits (612), Expect = 3.605e-78 Identity = 112/188 (59.57%), Postives = 140/188 (74.47%), Query Frame = 1 Query: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLANMYQRPDMITPGVDAHGHPIDPRKIQDHFQEFYEDLFEELS-KYGEIESLNVCDNLADHMVGNVYVQFREEEHAANAVRNLAGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRLQLFGK 561 MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLH KP+ S TI+L N+Y+ P D + ++Q+H+ F+E++F EL KYGEIE +NVCDNL DH+VGNVYV+FR EE A AV L R++ G+ + + SPVTDFRE+ CRQYE C RGG+CNFMHL+ ISR+LR QL+G+ Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSHCHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVAELNNRWFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISRNLRRQLYGR 188 The following BLAST results are available for this feature:
BLAST of Phvul.005G127700.1 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
Sequences
The
following sequences are available for this feature:
protein sequence of Phvul.005G127700.1_Pv_G19833_v2.1 >Phvul.005G127700.1_Pv_G19833_v2.1 ID=Phvul.005G127700.1_Pv_G19833_v2.1; Name=Phvul.005G127700.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=309bpback to top mRNA from alignment at Chr05:36534444..36537421- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Phvul.005G127700.1_Pv_G19833_v2.1 ID=Phvul.005G127700.1_Pv_G19833_v2.1; Name=Phvul.005G127700.1; organism=Phaseolus vulgaris; type=mRNA; length=2978bp; location=Sequence derived from: Chr05:36534444..36537421- (Phaseolus vulgarisback to top Coding sequence (CDS) from alignment at Chr05:36534444..36537421- >Phvul.005G127700.1_Pv_G19833_v2.1 ID=Phvul.005G127700.1_Pv_G19833_v2.1; Name=Phvul.005G127700.1; organism=Phaseolus vulgaris; type=CDS; length=927bp; location=Sequence derived from: Chr05:36534444..36537421- (Phaseolus vulgarisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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