Phvul.006G082300.1

Transcript Overview
NamePhvul.006G082300.1
Unique NamePhvul.006G082300.1_Pv_G19833_v2.1
TypemRNA
OrganismPhaseolus vulgaris (Common bean)
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr06supercontigChr06:19458176..19460134 -Phaseolus vulgaris G19833 genome v2.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Phaseolus vulgaris G19833 genome v2.12019-09-17
InterProScan: Phaseolus vulgaris G19833 genome v2.12019-10-18
BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot2019-10-18
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
pvpvR259Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pspvL157Pisum sativum Cameor genome v1aPisum sativum
pspvL497Pisum sativum Cameor genome v1aPisum sativum
pspvL503Pisum sativum Cameor genome v1aPisum sativum
pspvL505Pisum sativum Cameor genome v1aPisum sativum
pvvuR536Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pvvuR558Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caipvL0183Cicer arietinum ICC 4958 genome v2Cicer arietinum
caipvL0589Cicer arietinum ICC 4958 genome v2Cicer arietinum
caipvL0590Cicer arietinum ICC 4958 genome v2Cicer arietinum
capvL145Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
crpvL531Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
capvL464Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccpvL1099Cajanus cajan Asha genome v1.0Cajanus cajan
anpvL0199Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0486Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0716Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0960Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL1385Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
aspvL215Vigna angularis Jingnong 6 genome v1.1Vigna angularis
aspvL817Vigna angularis Jingnong 6 genome v1.1Vigna angularis
pvzwsR504Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvzwsR525Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvvfhR540Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvvfhR558Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvtifR534Vicia faba cv. Tiffany genome v1.0Vicia faba
pvtifR552Vicia faba cv. Tiffany genome v1.0Vicia faba
pvvrvR483Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvrvR509Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvuaR470Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvuaR495Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvssR623Vicia sativa cv. Studenica genome v1.0Vicia sativa
pvvssR650Vicia sativa cv. Studenica genome v1.0Vicia sativa
canpvL137Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canpvL444Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjpvL133Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjpvL793Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carpvL136Cicer arietinum
carpvL452Cicer arietinum
ccapvL059Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapvL529Cajanus cajan cv. Asha genome v2.0Cajanus cajan
pvvumR596Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvumR617Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvvaR602Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvvaR633Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvasR599Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvasR620Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvstR605Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvvstR627Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvpvfR501Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR516Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvvunR494Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
pvvunR514Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
rna-XM_004500347.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Vigst.05G129500.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Cr_13865.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Vigun06g091300.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Cc_v2.0_00527.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
evm.model.Chr06.1061Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vfaba.Tiffany.R1.2g052960.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Vigan.05G163800.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Ca_08893Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
jg52062.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Va09G044410.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Ca_13191.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
rna-TanjilR_21251Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-TanjilR_01472Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vigun06g091300.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Vum_05G01320.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Vfaba.Hedin2.R1.2g065040.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
LR48_mrnaVigan09g141200Vigna angularis Jingnong 6 genome v1.1Vigna angularis
rna-XM_014662095.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
rna-KK1_039960Cajanus cajan Asha genome v1.0Cajanus cajan
Psat5g146400.1Pisum sativum Cameor genome v1aPisum sativum
XM_058931876.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Psat05G0417500-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
PvulFLAVERTChr06.1001272Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Phvul.006G082300Phvul.006G082300_Pv_G19833_v2.1Phaseolus vulgarisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Phvul.006G082300.1_Pv_G19833_v2.1Phvul.006G082300.1_Pv_G19833_v2.1Phaseolus vulgarispolypeptide
Phvul.006G082300.1Phvul.006G082300.1_Pv_G19833_v2.1-proteinPhaseolus vulgarispolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.006G082300.1.v2.1.CDS.2Phvul.006G082300.1.v2.1.CDS.2_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.006G082300.1.v2.1.CDS.1Phvul.006G082300.1.v2.1.CDS.1_Pv_G19833_v2.1Phaseolus vulgarisCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.006G082300.1.v2.1.three_prime_UTR.1Phvul.006G082300.1.v2.1.three_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgaristhree_prime_UTR


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.006G082300.1.v2.1.five_prime_UTR.2Phvul.006G082300.1.v2.1.five_prime_UTR.2_Pv_G19833_v2.1Phaseolus vulgarisfive_prime_UTR
Phvul.006G082300.1.v2.1.five_prime_UTR.1Phvul.006G082300.1.v2.1.five_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgarisfive_prime_UTR


Homology
[Close]
BLAST of Phvul.006G082300.1 vs. DB:Swiss
Match: RK17_TOBAC (50S ribosomal protein L17, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL17 PE=2 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 2.423e-93
Identity = 139/172 (80.81%), Postives = 153/172 (88.95%), Query Frame = 1 
Query:  148 KLRISRTKPKS-LLTTFTGLAPLN-LLFLSAPSSASEYTGCDHSFTIIDNGGRVSAMRHGRRVPKLNRPPDQRRALIRGLTTQLLKYGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVPERYGERNGGYTRIIRTLPRRGDNAPMAYIELV 657
            +LRI + K  S LL +F GLAPL+ LL LS+  S    T  +HSFT+IDNGGRV AMRHGR+VPKLNRPPDQRRAL+RGLTTQLLK+GRIKTT+ARA A+RKYVDKMIT+AKDGSLHKRRQALGFIYEKQIVHALFAEVP+RYGERNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct:   38 RLRICKPKSSSRLLHSFVGLAPLHPLLSLSSQDS----TSFEHSFTVIDNGGRVFAMRHGRKVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTKARARAVRKYVDKMITMAKDGSLHKRRQALGFIYEKQIVHALFAEVPDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 205
[Close]
BLAST of Phvul.006G082300.1 vs. DB:Swiss
Match: RK17_ARATH (50S ribosomal protein L17, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL17 PE=2 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 2.470e-87
Identity = 128/170 (75.29%), Postives = 148/170 (87.06%), Query Frame = 1 
Query:  151 LRISRTKPKSLLTTFTGLAPLN-LLFLSAPSSASEYTGCDHSFTIIDNGGRVSAMRHGRRVPKLNRPPDQRRALIRGLTTQLLKYGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVPERYGERNGGYTRIIRTLPRRGDNAPMAYIELV 657
            LR+  + P   L +F+GL+P+N LL +  P    ++   ++ F I+D GGR+ AMRHGRRVPKLNRPPDQR+AL+RGLTTQLLK+GRIKTTRARASA+RK+VDKMITLAKDGSLHKRRQALG+IYEKQIVHALFAEVP+RYGERNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct:   48 LRLPISSPS--LPSFSGLSPVNPLLSIGLP----DWQSFENGFKIVDGGGRIYAMRHGRRVPKLNRPPDQRKALLRGLTTQLLKHGRIKTTRARASAMRKFVDKMITLAKDGSLHKRRQALGYIYEKQIVHALFAEVPDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 211
[Close]
BLAST of Phvul.006G082300.1 vs. DB:Swiss
Match: RK17_SPIOL (50S ribosomal protein L17, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL17 PE=1 SV=2)

HSP 1 Score: 231.876 bits (590), Expect = 1.725e-77
Identity = 110/126 (87.30%), Postives = 122/126 (96.83%), Query Frame = 1 
Query:  280 IIDNGGRVSAMRHGRRVPKLNRPPDQRRALIRGLTTQLLKYGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVPERYGERNGGYTRIIRTLPRRGDNAPMAYIELV 657
            +IDNGGR  AM+HGR++ +L+RP DQRRAL+RGLTTQLLK+GRIKTTRA+ASA+RKYVDKMITLAK+GSLHKRRQALGFIYEKQIVHALFAEVPERYG+RNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct:    1 MIDNGGRFFAMKHGRKIHRLSRPADQRRALLRGLTTQLLKHGRIKTTRAKASAMRKYVDKMITLAKEGSLHKRRQALGFIYEKQIVHALFAEVPERYGDRNGGYTRIIRTLPRRGDNAPMAYIELV 126
[Close]
BLAST of Phvul.006G082300.1 vs. DB:Swiss
Match: RL17_SYNR3 (50S ribosomal protein L17 OS=Synechococcus sp. (strain RCC307) OX=316278 GN=rplQ PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 1.311e-53
Identity = 80/116 (68.97%), Postives = 99/116 (85.34%), Query Frame = 1 
Query:  310 MRHGRRVPKLNRPPDQRRALIRGLTTQLLKYGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVPERYGERNGGYTRIIRTLPRRGDNAPMAYIELV 657
            MRH  RVP+L RP DQR+A++RGLTTQL++ GR+ TT+ARA A+R   ++MI+LAKDGSL  RR+ALG+IY+KQ+VHALF +  ERYG+RNGGYTRIIRT+PRRGDNA MA IELV
Sbjct:    1 MRHQCRVPQLGRPADQRKAMLRGLTTQLIREGRVTTTKARAKALRDETERMISLAKDGSLAARRRALGYIYDKQLVHALFDKASERYGDRNGGYTRIIRTVPRRGDNAEMAIIELV 116
[Close]
BLAST of Phvul.006G082300.1 vs. DB:Swiss
Match: RL17_THEEB (50S ribosomal protein L17 OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=rplQ PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 3.735e-53
Identity = 78/116 (67.24%), Postives = 100/116 (86.21%), Query Frame = 1 
Query:  310 MRHGRRVPKLNRPPDQRRALIRGLTTQLLKYGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVPERYGERNGGYTRIIRTLPRRGDNAPMAYIELV 657
            MRH RRVP+L RP DQR+AL+R LTT+L+++GRI TT+ARA A+R   ++MITLAKDGSL  RR+ALG++Y+KQ+VH+LFA+ PERYG+R GGYTRIIR++ RRGDNA +A IELV
Sbjct:    1 MRHQRRVPQLGRPADQRKALLRALTTELIRHGRITTTKARAKAVRAEAERMITLAKDGSLAARRRALGYLYDKQLVHSLFAQAPERYGDRQGGYTRIIRSVRRRGDNAELAVIELV 116
[Close]
BLAST of Phvul.006G082300.1 vs. DB:Swiss
Match: RL17_PROMT (50S ribosomal protein L17 OS=Prochlorococcus marinus (strain NATL2A) OX=59920 GN=rplQ PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 6.029e-52
Identity = 75/116 (64.66%), Postives = 98/116 (84.48%), Query Frame = 1 
Query:  310 MRHGRRVPKLNRPPDQRRALIRGLTTQLLKYGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVPERYGERNGGYTRIIRTLPRRGDNAPMAYIELV 657
            MRH RR+P+L+ P DQR+AL+RGLTTQL++ GR+ TT+ARA A+R   ++MITLAKDGSL  RR+A+G++Y+KQ+VHALF +  ERYG+R GGYTRI+RT PRRGDN+ MA +ELV
Sbjct:    1 MRHQRRIPQLSLPADQRKALLRGLTTQLIREGRVTTTKARAKALRNETERMITLAKDGSLASRRRAIGYVYDKQLVHALFEKAQERYGDREGGYTRIVRTTPRRGDNSEMAIVELV 116
[Close]
BLAST of Phvul.006G082300.1 vs. DB:Swiss
Match: RL17_PROM1 (50S ribosomal protein L17 OS=Prochlorococcus marinus (strain NATL1A) OX=167555 GN=rplQ PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 6.029e-52
Identity = 75/116 (64.66%), Postives = 98/116 (84.48%), Query Frame = 1 
Query:  310 MRHGRRVPKLNRPPDQRRALIRGLTTQLLKYGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVPERYGERNGGYTRIIRTLPRRGDNAPMAYIELV 657
            MRH RR+P+L+ P DQR+AL+RGLTTQL++ GR+ TT+ARA A+R   ++MITLAKDGSL  RR+A+G++Y+KQ+VHALF +  ERYG+R GGYTRI+RT PRRGDN+ MA +ELV
Sbjct:    1 MRHQRRIPQLSLPADQRKALLRGLTTQLIREGRVTTTKARAKALRNETERMITLAKDGSLASRRRAIGYVYDKQLVHALFEKAQERYGDREGGYTRIVRTTPRRGDNSEMAIVELV 116
[Close]
BLAST of Phvul.006G082300.1 vs. DB:Swiss
Match: RL17_PROMM (50S ribosomal protein L17 OS=Prochlorococcus marinus (strain MIT 9313) OX=74547 GN=rplQ PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 8.547e-52
Identity = 78/116 (67.24%), Postives = 98/116 (84.48%), Query Frame = 1 
Query:  310 MRHGRRVPKLNRPPDQRRALIRGLTTQLLKYGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVPERYGERNGGYTRIIRTLPRRGDNAPMAYIELV 657
            MRH  RVPKL RP DQR+A++RGLTTQL++ GR+ TT+ARA A+R   ++MITLAK+GSL  RR+A+G+IY+KQ+VHALF +  +RYG+R GGYTRIIRT+PRRGDNA MA IELV
Sbjct:    1 MRHQCRVPKLGRPTDQRKAMLRGLTTQLIREGRVTTTKARAKALRDEAERMITLAKNGSLASRRRAIGYIYDKQLVHALFDKAQDRYGDRQGGYTRIIRTVPRRGDNAEMAIIELV 116
[Close]
BLAST of Phvul.006G082300.1 vs. DB:Swiss
Match: RL17_PROM3 (50S ribosomal protein L17 OS=Prochlorococcus marinus (strain MIT 9303) OX=59922 GN=rplQ PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 8.547e-52
Identity = 78/116 (67.24%), Postives = 98/116 (84.48%), Query Frame = 1 
Query:  310 MRHGRRVPKLNRPPDQRRALIRGLTTQLLKYGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVPERYGERNGGYTRIIRTLPRRGDNAPMAYIELV 657
            MRH  RVPKL RP DQR+A++RGLTTQL++ GR+ TT+ARA A+R   ++MITLAK+GSL  RR+A+G+IY+KQ+VHALF +  +RYG+R GGYTRIIRT+PRRGDNA MA IELV
Sbjct:    1 MRHQCRVPKLGRPTDQRKAMLRGLTTQLIREGRVTTTKARAKALRDEAERMITLAKNGSLASRRRAIGYIYDKQLVHALFDKAQDRYGDRQGGYTRIIRTVPRRGDNAEMAIIELV 116
[Close]
BLAST of Phvul.006G082300.1 vs. DB:Swiss
Match: RL17_SYNS9 (50S ribosomal protein L17 OS=Synechococcus sp. (strain CC9902) OX=316279 GN=rplQ PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.051e-51
Identity = 78/116 (67.24%), Postives = 96/116 (82.76%), Query Frame = 1 
Query:  310 MRHGRRVPKLNRPPDQRRALIRGLTTQLLKYGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVPERYGERNGGYTRIIRTLPRRGDNAPMAYIELV 657
            MRH  RVP+L RP DQR+A++R LTTQL++ GR+ TT+ARA A+R   ++MITLAKDGSL  RR+A+G+IY+KQ+VHALF + P RYGER GGYTRI RT+PRRGDNA MA IELV
Sbjct:    1 MRHQCRVPQLGRPADQRKAMLRALTTQLIREGRVTTTKARAKALRDEAERMITLAKDGSLASRRRAIGYIYDKQLVHALFDKAPTRYGERKGGYTRITRTVPRRGDNAEMAIIELV 116
The following BLAST results are available for this feature:
BLAST of Phvul.006G082300.1 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
RK17_TOBAC2.423e-9380.8150S ribosomal protein L17, chloroplastic OS=Nicoti... [more]
RK17_ARATH2.470e-8775.2950S ribosomal protein L17, chloroplastic OS=Arabid... [more]
RK17_SPIOL1.725e-7787.3050S ribosomal protein L17, chloroplastic OS=Spinac... [more]
RL17_SYNR31.311e-5368.9750S ribosomal protein L17 OS=Synechococcus sp. (st... [more]
RL17_THEEB3.735e-5367.2450S ribosomal protein L17 OS=Thermosynechococcus e... [more]
RL17_PROMT6.029e-5264.6650S ribosomal protein L17 OS=Prochlorococcus marin... [more]
RL17_PROM16.029e-5264.6650S ribosomal protein L17 OS=Prochlorococcus marin... [more]
RL17_PROMM8.547e-5267.2450S ribosomal protein L17 OS=Prochlorococcus marin... [more]
RL17_PROM38.547e-5267.2450S ribosomal protein L17 OS=Prochlorococcus marin... [more]
RL17_SYNS91.051e-5167.2450S ribosomal protein L17 OS=Synechococcus sp. (st... [more]
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InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000456Ribosomal protein L17TIGRFAMTIGR00059TIGR00059coord: 110..219
e-value: 2.4E-42
score: 141.8
IPR000456Ribosomal protein L17PFAMPF01196Ribosomal_L17coord: 123..219
e-value: 1.9E-33
score: 115.3
IPR000456Ribosomal protein L17HAMAPMF_01368Ribosomal_L17coord: 108..219
score: 26.028
IPR036373Ribosomal protein L17 superfamilyGENE3D3.90.1030.10coord: 104..219
e-value: 7.1E-47
score: 160.5
IPR036373Ribosomal protein L17 superfamilySUPERFAMILY64263Prokaryotic ribosomal protein L17coord: 104..219
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..40

Sequences
The following sequences are available for this feature:

protein sequence of Phvul.006G082300.1_Pv_G19833_v2.1

>Phvul.006G082300.1_Pv_G19833_v2.1 ID=Phvul.006G082300.1_Pv_G19833_v2.1; Name=Phvul.006G082300.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=220bp
MASVSVMATSSDNRWSMASLRSALPSPSPPSLSSSVRFSVSSSSSSSTMK
LRISRTKPKSLLTTFTGLAPLNLLFLSAPSSASEYTGCDHSFTIIDNGGR
VSAMRHGRRVPKLNRPPDQRRALIRGLTTQLLKYGRIKTTRARASAIRKY
VDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVPERYGERNGGYTRI
IRTLPRRGDNAPMAYIELV*
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mRNA from alignment at Chr06:19458176..19460134-

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Phvul.006G082300.1_Pv_G19833_v2.1 ID=Phvul.006G082300.1_Pv_G19833_v2.1; Name=Phvul.006G082300.1; organism=Phaseolus vulgaris; type=mRNA; length=1959bp; location=Sequence derived from: Chr06:19458176..19460134- (Phaseolus vulgaris
ACAAATCTCTCTCTCTCTCTCTCTCTCTTCCTGTTTTCTCTATCCACATT
CGTTATCTAGTGAGTGTGGGACTTCTGGTGTTGCTCAACGCACGCAACAA
TGGCGTCAGTTTCAGTCATGGCTACGAGCAGCGACAACAGGTGGTCTATG
GCTTCCTTGCGCTCTGCTTTACCCTCTCCTTCTCCTCCTTCACTTTCCTC
TTCAGTGCGCTTCTCTGTCTCTTCATCTTCTTCGTCTTCTACAATGAAAC
TCCGAATTTCTCGAACCAAACCCAAATCCCTTCTCACCACTTTCACCGGT
CTCGCCCCTCTTAACCTCCTCTTCCTCTCCGCTCCTTCTTCTGCTTCAGG
TTCTCACTCACTACCACTCATTCCCCTTTCTATTTGCTTTTCTTTTAATC
CGTTGCTATTACTCAGTTTTGTTTTGCTGTCTTCTTCAATTTGGCTGTGT
CAGTTAGATTTGGTCTATTGCTTCGTGGATTTATCTTCATTTTTTGTTGA
TGTTTTGTTTTTTATTTATTTTTTAATAAATGTTATGACTTGTTCACAGC
AAAACAATAAATAATTCTTGAATTGAATCCGTTATGGAGAGCATTGCATT
GTGTGTGAGAGAGCGATGGTTCATTTGGTGTTAGGATTTATTGATTACAA
CTATGAAAGGAACTTTCGGGATATTGAAATCTATTGCCATTTAGAGGCTT
AAGCATTCGAATTTGGTTAATTGTTGTTATTTGTATTTTGATTTAAGTTT
AATTTCTTTGCACTTTTTTGCAATACTAACCAGTGGTCATATAAAATGTA
ACTAGTAAAATAGTTCTTGCTAAATTTAACAAGCTCATCATGCTTGGTTT
CGTTCTCCTTAATTATAGATCTCATAATTGAAACTCGTATGTGAAAAAGA
CATCTAATGAGAAAGCTAGTTCCATCATGTTATGGATTTTTTGGTTCAAA
ATAATTTTCTGCTACTGAGAATGCATGTAATTTCAACCATAAAAAAGTTG
TCTTTAATCTGATAGGCCTCTTCCTCTTGTTAGATCAAGTGGAGAAATCA
TACTCTAACATTGCCTTTGAGGTTGTTGTGTGCGTGAGTGATATCTGCTT
CCCAGTTGTTCTATTAAACTATGAAATATAGTAGTTCCGTTTCCCTTGTC
CTCACTTCCAATTTCATCTTCATGTTACAGAATACACCGGCTGTGATCAC
TCCTTTACCATTATTGACAATGGTGGTCGAGTATCTGCCATGAGACATGG
GAGGCGGGTGCCCAAACTCAACAGGCCACCTGATCAGCGCCGTGCGCTCA
TTCGAGGCCTTACAACTCAGCTCCTCAAATATGGTCGCATCAAGACCACC
AGAGCAAGGGCCAGTGCAATTAGGAAGTATGTTGATAAAATGATTACTTT
AGCGAAGGATGGATCTCTTCATAAAAGGAGACAAGCCCTTGGGTTCATCT
ATGAGAAGCAGATTGTTCATGCTTTATTTGCAGAGGTTCCAGAGCGTTAC
GGTGAAAGAAATGGGGGTTACACAAGAATTATAAGAACCCTACCAAGGCG
AGGTGATAATGCACCTATGGCATACATTGAACTTGTGTAACCATCACCTT
TATTTGGGTGCTGTTATCAGCAATCTCACTGCAATGTTGAGCTTGTCTAT
GTATCCAGCGGTAACAATGATTCTGCAGTTTGTGTATTATGCCTTTTTGA
TTAGTTTTAGTCTGTGCATCTATTTGTGTACTTGTGGACAAACAACAACC
ATCTTTGATCTTTAAGTGATCATCTGCAGAAGTTCATAGATTCACTTATT
TGTTAAGATTACAGATGTTTTAAGTATGTTTGCATTTGTGACATGCCTTT
TTTACTACTCTGTTTACGGTCTTGCTGTAATAACTCTAGACACAAAGCAT
TTATGATATCAAGTGATCATCTGCATAAGGTCAAGAATTCACCTATTTGT
TAAAAGTTC
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Coding sequence (CDS) from alignment at Chr06:19458176..19460134-

>Phvul.006G082300.1_Pv_G19833_v2.1 ID=Phvul.006G082300.1_Pv_G19833_v2.1; Name=Phvul.006G082300.1; organism=Phaseolus vulgaris; type=CDS; length=660bp; location=Sequence derived from: Chr06:19458176..19460134- (Phaseolus vulgaris
ATGGCGTCAGTTTCAGTCATGGCTACGAGCAGCGACAACAGGTGGTCTAT
GGCTTCCTTGCGCTCTGCTTTACCCTCTCCTTCTCCTCCTTCACTTTCCT
CTTCAGTGCGCTTCTCTGTCTCTTCATCTTCTTCGTCTTCTACAATGAAA
CTCCGAATTTCTCGAACCAAACCCAAATCCCTTCTCACCACTTTCACCGG
TCTCGCCCCTCTTAACCTCCTCTTCCTCTCCGCTCCTTCTTCTGCTTCAG
AATACACCGGCTGTGATCACTCCTTTACCATTATTGACAATGGTGGTCGA
GTATCTGCCATGAGACATGGGAGGCGGGTGCCCAAACTCAACAGGCCACC
TGATCAGCGCCGTGCGCTCATTCGAGGCCTTACAACTCAGCTCCTCAAAT
ATGGTCGCATCAAGACCACCAGAGCAAGGGCCAGTGCAATTAGGAAGTAT
GTTGATAAAATGATTACTTTAGCGAAGGATGGATCTCTTCATAAAAGGAG
ACAAGCCCTTGGGTTCATCTATGAGAAGCAGATTGTTCATGCTTTATTTG
CAGAGGTTCCAGAGCGTTACGGTGAAAGAAATGGGGGTTACACAAGAATT
ATAAGAACCCTACCAAGGCGAGGTGATAATGCACCTATGGCATACATTGA
ACTTGTGTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000456Ribosomal_bL17
IPR036373Ribosomal_bL17_sf
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome