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Transcript Overview
Name | Phvul.006G144300.1 |
Unique Name | Phvul.006G144300.1_Pv_G19833_v2.1 |
Type | mRNA |
Organism | Phaseolus vulgaris (Common bean) |
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
Phvul.006G144300.1 | Phvul.006G144300.1_Pv_G19833_v2.1-protein | Phaseolus vulgaris | polypeptide |
Phvul.006G144300.1_Pv_G19833_v2.1 | Phvul.006G144300.1_Pv_G19833_v2.1 | Phaseolus vulgaris | polypeptide |
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Phvul.006G144300.1.v2.1.five_prime_UTR.1 | Phvul.006G144300.1.v2.1.five_prime_UTR.1_Pv_G19833_v2.1 | Phaseolus vulgaris | five_prime_UTR |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Phvul.006G144300.1.v2.1.CDS.1 | Phvul.006G144300.1.v2.1.CDS.1_Pv_G19833_v2.1 | Phaseolus vulgaris | CDS |
Phvul.006G144300.1.v2.1.CDS.2 | Phvul.006G144300.1.v2.1.CDS.2_Pv_G19833_v2.1 | Phaseolus vulgaris | CDS |
Phvul.006G144300.1.v2.1.CDS.3 | Phvul.006G144300.1.v2.1.CDS.3_Pv_G19833_v2.1 | Phaseolus vulgaris | CDS |
Phvul.006G144300.1.v2.1.CDS.4 | Phvul.006G144300.1.v2.1.CDS.4_Pv_G19833_v2.1 | Phaseolus vulgaris | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Phvul.006G144300.1.v2.1.three_prime_UTR.1 | Phvul.006G144300.1.v2.1.three_prime_UTR.1_Pv_G19833_v2.1 | Phaseolus vulgaris | three_prime_UTR |
Homology
BLAST of Phvul.006G144300.1 vs. DB:Swiss
Match: Y1686_ARATH (Uncharacterized membrane protein At1g16860 OS=Arabidopsis thaliana OX=3702 GN=At1g16860 PE=1 SV=1) HSP 1 Score: 394.815 bits (1013), Expect = 2.638e-133 Identity = 238/475 (50.11%), Postives = 313/475 (65.89%), Query Frame = 1
Query: 1 MGTRIPSHQLSSGLYVSGRPEQVKERPPTMTSRSVPYTGGDPKKSGELGKMLEIPSVDQKTXXX------------XXXXXXXXXXXXXAVGRLSGS--------------GPMS------------------RKSSGSGPIALQPTGLITXXXXXXXXXXXXXXXQ-----LEQPSAVVSAGKTV-YGSAVTSLNEEVKVGFKVS--RALVWVFMVVVAMSLLVGVFXXXXXXXXXXXXXXXXXXXXXXXXXXWNCVWGRRGLLGFVKRYPDAELRGAIDGQYVKVTGVVTCGSIPLESSYQRVPRCVYVSTELYEYKGLGGKSANPKHGCFTWGSRYSEKYVADFYVSDFQSGLRALVKAGYGAKVAPFVEPNTVVDVTKDNKELSPNFLGWLADRKLSSDDRIMRLKEGYIKEGSTVSVMGIVQRHDNVLMIVPSAEPVSTGCQWIRCLLPTYAEGLIMTCEDNQNADVIPV 1269
MG+R PSHQLS+GL+VSGRPEQ KER PTM++ ++PYTGGD K+SGELGKM +IP+ K+ + +G+ +SGP + A GR+SGS GP+S R++SGS PI L TGLITSGP+ SGP+ S + + L+ + S TV + AVT+L E S + ++W+ +++ M L G F++ AV ++LV +A + V L WN WGRRG+ F+ RYPDA+LR A +GQ+VKVTGVVTCG++PLESS+ RVPRCVY ST LYEY+G G K AN H FTWG R SE++V DFY+SDFQSGLRALVK G GAKV P V+ + V+D + ++++SP+F+ WL + L+SDDRIMRLKEGYIKEGSTVSV+G+VQR+DNVLMIVPS+EP++ G QW RC PT EG+++ CED+ N D IPV
Sbjct: 1 MGSRYPSHQLSNGLFVSGRPEQPKERAPTMSAVAMPYTGGDIKRSGELGKMFDIPADGTKSRKSGPIPGAPSRSGSFAGTAQSGPGAPMATGRMSGSLASAGSVSMKKTNSGPLSKHGEPLKKSSGPQSGGVTRQNSGSIPI-LPATGLITSGPITSGPLNSSGAPRKVSGPLDSSGLMKSHMPTVVHNQAVTTLGPEDDFSCLKSFPKPVLWLVVLIFIMGFLAGGFILGAVHNPILLVVVAILFTVVAALFIWNICWGRRGITDFIARYPDADLRTAKNGQHVKVTGVVTCGNVPLESSFHRVPRCVYTSTCLYEYRGWGSKPANSSHRHFTWGLRSSERHVVDFYISDFQSGLRALVKTGSGAKVTPLVDDSVVIDFKQGSEQVSPDFVRWLGKKNLTSDDRIMRLKEGYIKEGSTVSVIGVVQRNDNVLMIVPSSEPLAAGWQWRRCTFPTSLEGIVLRCEDSSNVDAIPV 474
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..126 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 86..108 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..16 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 58..73 |
Sequences
The
following sequences are available for this feature:
protein sequence of Phvul.006G144300.1_Pv_G19833_v2.1 >Phvul.006G144300.1_Pv_G19833_v2.1 ID=Phvul.006G144300.1_Pv_G19833_v2.1; Name=Phvul.006G144300.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=424bp MGTRIPSHQLSSGLYVSGRPEQVKERPPTMTSRSVPYTGGDPKKSGELGK MLEIPSVDQKTSRPSSGSVRSGPNSGPAVGRLSGSGPMSRKSSGSGPIAL QPTGLITSGPVGSGPVGSRRSGQLEQPSAVVSAGKTVYGSAVTSLNEEVK VGFKVSRALVWVFMVVVAMSLLVGVFLMVAVKKAVILVALAAVIMPVVVL IAWNCVWGRRGLLGFVKRYPDAELRGAIDGQYVKVTGVVTCGSIPLESSY QRVPRCVYVSTELYEYKGLGGKSANPKHGCFTWGSRYSEKYVADFYVSDF QSGLRALVKAGYGAKVAPFVEPNTVVDVTKDNKELSPNFLGWLADRKLSS DDRIMRLKEGYIKEGSTVSVMGIVQRHDNVLMIVPSAEPVSTGCQWIRCL LPTYAEGLIMTCEDNQNADVIPV* back to topmRNA from alignment at Chr06:25021118..25025430+ Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Phvul.006G144300.1_Pv_G19833_v2.1 ID=Phvul.006G144300.1_Pv_G19833_v2.1; Name=Phvul.006G144300.1; organism=Phaseolus vulgaris; type=mRNA; length=4313bp; location=Sequence derived from: Chr06:25021118..25025430+ (Phaseolus vulgaris TAATAAGGTAAAAGGAGGAGGAAGCGTGGGGACAGAAGAAACACCAAACT
GCAAATAAACCAGCAACAATGTGGTATACCCTCCAGAGCCCCAACATTAT
TAGCACAGCTATTTGGCCAAAGAGACAGACAAGGGACACAGGTGTCATTA
TCAAGAACCTCAACCCCATTTCTGCAATTCCATTCAACCTCCCCCACTTC
TAACTTAGTTCTCCTTCCACTTGCACCACCACCAACACTTACACACACCA
AGTGCAGGAGCAAACACCAACACACACCAACACTATCACCCCCCTCAGGA
ACAGGAGGAAGAAACATACCCTTTTGCTCTGTGAAGCCCAAGTTGCTCTT
TTTTCTCAAATGGGGACGCGAATCCCTTCTCACCAGCTCAGCAGTGGCCT
ATACGTGTCGGGTCGACCCGAACAGGTGAAAGAGCGCCCGCCGACAATGA
CCTCACGCTCCGTACCGTACACTGGCGGCGACCCAAAAAAGTCCGGCGAG
CTGGGGAAAATGTTAGAAATCCCCAGCGTTGATCAGAAGACGTCGCGGCC
GTCATCCGGGTCGGTGAGATCCGGGCCAAATTCGGGTCCCGCAGTTGGGA
GGCTTAGCGGGTCGGGGCCCATGTCGCGGAAGTCGTCTGGGTCGGGCCCG
ATAGCGCTGCAGCCGACGGGCCTGATAACGTCGGGTCCAGTGGGATCCGG
CCCGGTTGGGAGTCGTCGGTCGGGGCAGCTGGAACAACCGTCTGCGGTGG
TGTCGGCGGGGAAGACAGTGTATGGCTCGGCGGTGACGAGTCTGAACGAG
GAGGTGAAGGTGGGGTTCAAGGTGTCAAGGGCGTTGGTGTGGGTGTTCAT
GGTGGTGGTGGCAATGAGTTTGCTTGTTGGGGTGTTTCTCATGGTGGCAG
TGAAGAAAGCTGTGATTTTGGTGGCTCTTGCAGCGGTTATTATGCCTGTG
GTGGTTTTGATCGCTTGGAATTGCGTTTGGGGGAGACGAGGGCTTTTAGG
GTTTGTGAAAAGGTACCCTGATGCTGAGCTTAGAGGCGCCATTGATGGAC
AGTACGTTAAGGTTACGGGGGTAATTTTCTTTCTTTCCTATGCTAATAAC
GATAATGGTATAATCATCTTTAGTGATGTCTCAATATCATAAAATGACGA
TTCTTCTTGATGGCATGCTATTTGTTTTGTTCAGCTAACATTTAATTTAA
CATTATTTATTTATGATATATCCTTCCCCCTAATTTTTTTTTGTTTTTTG
TTTTAATAATGTGATGTTTGGTATGGGGTTTTGATACTTACACAACAAGT
GAATTTGGTCGTGGTGATTGCGACTGCTTCTTTTGGAGTTGTCCTATTTG
TTGAAAGTTTTTTTTTCTCGCGTTAGAGTCTGTGCAAGTATTTATAAGCT
AGTAGATTTGTTCTGATATCGATGTATGGATATGCTTTGTTCATTTTGCG
GTACAAACTGGAAGGTCTATAATGTGGCTCAAAAGAGAAGAGTTAACTTG
CATGTTGTAGAATTATTTACTTAGTTCAGAAACTTGAATAAAAGTAGACG
TCTCTTCATGAATTCAGCAGACATGGTGGTCAGGGACGATGATGTTTAGC
GTGCATTTTAGTGGTAGAGTAATAAGGAAGGATCGCATATTTGGCTTTTT
ACTAGAATGGTTGGAATGTAAATGTAATCAAAAGTTCTTGACATAAGTAA
ACTTAATATTAATTTCTTGGATTCTTCTGGTTGTGGATGGTATTTAGGGA
TGTTTATCTTGCAGTGTAATTGTGTGGCATTTAAGTAGTATTTTTTTGCT
TCACCTTCACTTTTGCTATCTCTCTTAGTCTGCTGTGAAAAATTCTTCTG
CAAGATATTATGCATAATATCTGGTTTTAATCGTAATCCCTGAACTGCTT
CAACACTTGCTCCTATCACAATGCACTCAAATAGGATTGTTCTATGGATG
GATGATAATGTCCTTTAGAGACATTGATGCTTGTATCCCTGTTGCGCTTC
TATAATGTATTTTTTATATGTATCATGTCTCTTTCTGTAGGTTGTAACCT
GTGGCAGCATTCCTTTGGAGTCATCCTACCAAAGAGTACCGAGATGTGTA
TATGTCTCCACCGAATTATATGAATATAAAGGATTGGGTGGAAAATCAGC
AAATCCTAAACACGGTTGCTTTACTTGGGGTTCTAGATACTCTGAGGTTA
GTTGGTTTAATTCTTATTGATGCTTTGTGTATACTATTGATTCAGGGTCA
AGCATAATTAATAAAAGAGAGAACCATTTATGCACACAGATCTACATTGA
CTTCATTGATACCTAAAACACACAATGAATATATGCTTGAGGAGTAACAA
GTTGATTTGTAGATAAGAAAGGAATTTTAAAGCAACTTAAAATTAAGGAG
ACCTTAGAGCTCGGATTCGTGTTTGATGCCATCTGGGACTTGGGTGTGAG
TTACTGTTTTATACTCTTTAGGTTATGCCTCTGTTCCCAGTTATATATAA
TATGTTGATTTAACAATATAGCTGCATGTCAATGTAATTTGCCCAATAAT
AAATATGCTTGAGGGTTAATTTGATATTATTAGAATGAAATACTACTATA
TTTTCTGTCACTTCAACTGTCTCCACTTTCTTGGTATATTTAACTTATGT
CTATACTTCGCATGTGTCGAGATTTAAACAGAAAATGAAGATGGAAATTG
TGATTCCATTGAAATAGGCTAAAACACTGCAATGGATGCTCACTTGAAAC
TTGAAAACAACCTTAGGAGCCTTCCCATCCATGCTTTTGATGGATTCAGT
TTTACTCCTATGCTTGTGGTGCCCAACCACACCAGTCATTGAAATGCGTA
AAACCCACCAAAATGTCAAAAACCCTAACACAATTGTTTTTAGTCTGCGT
AAGAAAACTACTTGCACGATTATCTTAGAGCCTTTTCATTTTGATGAATG
CATATACATTTTCATGTTTGGTTCACACTATAAATTGAATTATTATTTCC
ACTTCACCACTTTGATTGGAATGGAGGTTTTACAGTCAATAACGTTACCA
TGCTCTACATGTGTTACGTATCACCAAAATCTGTAAATTTATTGAATGTT
GTAGTCTGGTCCTTTACCAGCAACCTTTCTAAGGTGAGAAACTGCTGTGT
AAAGATTGTGGATTATTTGTTTGGTTTTGTCAGGCTTCTTGATGACCATA
TATTGTAATACTCATGTCTCTCTTACTCTACATAATGCCAAAGTTTTCAT
TATCTTCCATGAACAGAAATATGTGGCGGATTTCTATGTATCAGACTTTC
AGTCTGGATTAAGAGCATTGGTGAAAGCAGGCTATGGTGCCAAGGTTGCC
CCTTTTGTGGAACCAAATACTGTGGTTGATGTAACAAAGGATAACAAAGA
GTTGTCCCCTAATTTCTTAGGCTGGCTTGCAGACCGCAAACTCTCTAGCG
ATGACAGGATCATGCGCCTCAAGGAAGGGTATGGACTGTTTTATTCTGCA
GTTTACTATTCATTTGAAAGTGTCTTTTTTCTCTCTCTTTTTTAACAGTT
TCCTTCCTAATTGTAACTTGGTACTTATAAAATGAATTTGGAAATGCATA
GGTACATCAAAGAAGGTAGCACCGTAAGTGTGATGGGAATTGTTCAACGA
CACGATAATGTGCTCATGATTGTGCCTTCGGCCGAGCCTGTCTCAACAGG
CTGCCAGTGGATCCGCTGTCTTTTGCCAACCTATGCTGAAGGGCTAATCA
TGACATGCGAAGATAATCAAAATGCTGATGTCATTCCTGTTTAGTTTTTT
CTTTTGCTGGCAAATCAGTGTGTCACACTTCTGAAATGACGAAACTGATG
GGGGAATCCTACACTAAGGAATCAAAGTACTTTCCACTTGCAGGTTTTTG
TGTATGGCTTGGATGATTATGCTAAGCGCACTACTAATATTGTCATGATA
ATCAGAAGATTTGATTAATATGACGCAAGGATTCACAAGTCCAACTACAA
GCACTTTGAGAAGGTCAATCATCGATCGATATATCCACGAAGTTGCATTG
TACTTTTTCTGCTTATTTATGTACATAGGTAGAGGTGCCCGAAGGGGTTC
AGAGTAGTTGTGTTGTTGTGTTTGAGCTAATTCTAGCCGGAATATAGCTA
AATTTTATTTGTCAAGTTTGGTTAACTTGTATTCTTAAGTCGATATGTTG
TACGCTGCCTATGTTAGTAGTTGTAAAAATCGAGAACCGTCCACGTTACC
ACAATACTGTTGTATAAATGTTGGTTAAAATCCAGTTAAAATGCGCTTTA
CATTACTATTTCT back to topCoding sequence (CDS) from alignment at Chr06:25021118..25025430+ >Phvul.006G144300.1_Pv_G19833_v2.1 ID=Phvul.006G144300.1_Pv_G19833_v2.1; Name=Phvul.006G144300.1; organism=Phaseolus vulgaris; type=CDS; length=1272bp; location=Sequence derived from: Chr06:25021118..25025430+ (Phaseolus vulgaris ATGGGGACGCGAATCCCTTCTCACCAGCTCAGCAGTGGCCTATACGTGTC GGGTCGACCCGAACAGGTGAAAGAGCGCCCGCCGACAATGACCTCACGCT CCGTACCGTACACTGGCGGCGACCCAAAAAAGTCCGGCGAGCTGGGGAAA ATGTTAGAAATCCCCAGCGTTGATCAGAAGACGTCGCGGCCGTCATCCGG GTCGGTGAGATCCGGGCCAAATTCGGGTCCCGCAGTTGGGAGGCTTAGCG GGTCGGGGCCCATGTCGCGGAAGTCGTCTGGGTCGGGCCCGATAGCGCTG CAGCCGACGGGCCTGATAACGTCGGGTCCAGTGGGATCCGGCCCGGTTGG GAGTCGTCGGTCGGGGCAGCTGGAACAACCGTCTGCGGTGGTGTCGGCGG GGAAGACAGTGTATGGCTCGGCGGTGACGAGTCTGAACGAGGAGGTGAAG GTGGGGTTCAAGGTGTCAAGGGCGTTGGTGTGGGTGTTCATGGTGGTGGT GGCAATGAGTTTGCTTGTTGGGGTGTTTCTCATGGTGGCAGTGAAGAAAG CTGTGATTTTGGTGGCTCTTGCAGCGGTTATTATGCCTGTGGTGGTTTTG ATCGCTTGGAATTGCGTTTGGGGGAGACGAGGGCTTTTAGGGTTTGTGAA AAGGTACCCTGATGCTGAGCTTAGAGGCGCCATTGATGGACAGTACGTTA AGGTTACGGGGGTTGTAACCTGTGGCAGCATTCCTTTGGAGTCATCCTAC CAAAGAGTACCGAGATGTGTATATGTCTCCACCGAATTATATGAATATAA AGGATTGGGTGGAAAATCAGCAAATCCTAAACACGGTTGCTTTACTTGGG GTTCTAGATACTCTGAGAAATATGTGGCGGATTTCTATGTATCAGACTTT CAGTCTGGATTAAGAGCATTGGTGAAAGCAGGCTATGGTGCCAAGGTTGC CCCTTTTGTGGAACCAAATACTGTGGTTGATGTAACAAAGGATAACAAAG AGTTGTCCCCTAATTTCTTAGGCTGGCTTGCAGACCGCAAACTCTCTAGC GATGACAGGATCATGCGCCTCAAGGAAGGGTACATCAAAGAAGGTAGCAC CGTAAGTGTGATGGGAATTGTTCAACGACACGATAATGTGCTCATGATTG TGCCTTCGGCCGAGCCTGTCTCAACAGGCTGCCAGTGGATCCGCTGTCTT TTGCCAACCTATGCTGAAGGGCTAATCATGACATGCGAAGATAATCAAAA TGCTGATGTCATTCCTGTTTAG back to top
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