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Transcript Overview
| Name | Phvul.006G145000.1 |
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| Unique Name | Phvul.006G145000.1_Pv_G19833_v2.1 |
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| Type | mRNA |
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| Organism | Phaseolus vulgaris (Common bean) |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Phvul.006G145000.1 | Phvul.006G145000.1_Pv_G19833_v2.1-protein | Phaseolus vulgaris | polypeptide |
| Phvul.006G145000.1_Pv_G19833_v2.1 | Phvul.006G145000.1_Pv_G19833_v2.1 | Phaseolus vulgaris | polypeptide |
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Phvul.006G145000.1.v2.1.five_prime_UTR.2 | Phvul.006G145000.1.v2.1.five_prime_UTR.2_Pv_G19833_v2.1 | Phaseolus vulgaris | five_prime_UTR |
| Phvul.006G145000.1.v2.1.five_prime_UTR.1 | Phvul.006G145000.1.v2.1.five_prime_UTR.1_Pv_G19833_v2.1 | Phaseolus vulgaris | five_prime_UTR |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Phvul.006G145000.1.v2.1.CDS.1 | Phvul.006G145000.1.v2.1.CDS.1_Pv_G19833_v2.1 | Phaseolus vulgaris | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Phvul.006G145000.1.v2.1.three_prime_UTR.1 | Phvul.006G145000.1.v2.1.three_prime_UTR.1_Pv_G19833_v2.1 | Phaseolus vulgaris | three_prime_UTR |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR001841 | Zinc finger, RING-type | SMART | SM00184 | ring_2 | coord: 141..178
e-value: 2.8E-6
score: 36.9 |
| IPR001841 | Zinc finger, RING-type | PROSITE | PS50089 | ZF_RING_2 | coord: 141..179
score: 10.896 |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type | GENE3D | 3.30.40.10 | | coord: 115..189
e-value: 2.3E-14
score: 54.6 |
| None | No IPR available | PFAM | PF13920 | zf-C3HC4_3 | coord: 138..184
e-value: 1.6E-11
score: 43.9 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 41..69 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 41..59 |
| None | No IPR available | CDD | cd16449 | RING-HC | coord: 141..178
e-value: 3.59951E-8
score: 45.9213 |
| None | No IPR available | SUPERFAMILY | 57850 | RING/U-box | coord: 140..186 |
Sequences
The
following sequences are available for this feature:
protein sequence of Phvul.006G145000.1_Pv_G19833_v2.1 >Phvul.006G145000.1_Pv_G19833_v2.1 ID=Phvul.006G145000.1_Pv_G19833_v2.1; Name=Phvul.006G145000.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=190bp
MDGVDAGAPRRRTFKERFGFIGIGCCGATWGFRSDALTFTHGEQQQQQQA
NQQETDPSRGSGPECVDPAATGSGMNLAAALAAERQIRGPQEDAAAARAP
GTPWRVSLMRLLEESEGGESAAVEKEKEEEKGGVVGNDSVCCVCMGRKKG
AAFIPCGHTFCRVCSRELWLNRGSCPLCNRSILEILDIF* back to topmRNA from alignment at Chr06:25087281..25088598- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Phvul.006G145000.1_Pv_G19833_v2.1 ID=Phvul.006G145000.1_Pv_G19833_v2.1; Name=Phvul.006G145000.1; organism=Phaseolus vulgaris; type=mRNA; length=1318bp; location=Sequence derived from: Chr06:25087281..25088598- (Phaseolus vulgaris
AGTCTAAGAAAGTGAAGTGTCTTGCGAAAAATTGAAAATAAAGAAAAAAA
AAAAAAAGGAATTATTGCGTGACACGGTGACTGCGTTGGTGAAACTGGGA
GAGTATAAAGGAGGGTCACACTCTGTAAAGGGAAGCACGTTCCTTCTCTT
GCTGCTTCTATTTTGTCCTTGCTTACTTCATTTCATTTCAAACGACCAAC
ACTATTAATTAAACCACGCATTGCATTTCGCAACTATTCCAATTCCCAAT
TCAACTCTTTCTCTCTGCTTCTTCCCTGTTTCTTTGGCTCTCTCCAATTC
ACGAGATATCTGCGCCCTAACCTCTCTTCTTCAATGTAATATTACTATTA
TTCCTCGTCTTTCTAACTCTTCTGTCCTCACTCTGCAAGCTATGAGTCAA
CTCAGTGTCGTCTTGCAGGAATCGCTACACAGGGAGCCCAGGACCATTCT
GGGGTTGTTGAGGGATCAGATGGACGGTGTAGATGCTGGGGCTCCAAGGA
GGAGGACTTTCAAGGAACGCTTCGGATTCATAGGCATTGGCTGTTGTGGG
GCCACATGGGGCTTCCGTTCTGACGCGTTAACTTTCACCCACGGGGAACA
GCAGCAGCAGCAGCAAGCGAACCAGCAGGAAACGGATCCGAGTCGAGGGT
CGGGTCCGGAATGCGTGGATCCTGCTGCGACGGGGTCCGGTATGAACCTG
GCGGCGGCGCTTGCGGCTGAGCGGCAAATCCGGGGGCCGCAGGAGGATGC
GGCGGCAGCGAGGGCACCGGGGACGCCGTGGAGGGTGTCGCTGATGAGGC
TGCTGGAGGAGAGCGAAGGAGGGGAGTCGGCGGCGGTGGAGAAGGAAAAA
GAGGAGGAGAAGGGTGGTGTTGTGGGGAATGATTCAGTGTGCTGCGTGTG
CATGGGGAGGAAGAAAGGCGCGGCGTTCATCCCATGTGGTCACACTTTTT
GCAGGGTGTGTTCCAGGGAACTCTGGCTTAATCGAGGGTCTTGTCCCCTC
TGCAATCGTTCCATCCTCGAGATTCTCGACATTTTCTAGTATCACTACTC
ATTCTTCAATACTTCACGCTTTTCTTTTTACTTTTTCTTTTACTCATCCT
AAAACCACTTCATCCTTCGCCACGTGTAATACCATTCTATGAATTTCACT
GTCTGTTCATGTAAATACTATCACAACATTGCTGTGCTATGCCTATTCAC
CACACAACCTTCACCAAACCCCGCTTCAGCTGTTTACCTTCTTTTTCTTT
CATTTTGTTTTTATATACCACATTTGTCAAAACATAATTCTGTCTTCACT
TTTGGTAATATCAATTTT back to topCoding sequence (CDS) from alignment at Chr06:25087281..25088598- >Phvul.006G145000.1_Pv_G19833_v2.1 ID=Phvul.006G145000.1_Pv_G19833_v2.1; Name=Phvul.006G145000.1; organism=Phaseolus vulgaris; type=CDS; length=570bp; location=Sequence derived from: Chr06:25087281..25088598- (Phaseolus vulgaris
ATGGACGGTGTAGATGCTGGGGCTCCAAGGAGGAGGACTTTCAAGGAACG
CTTCGGATTCATAGGCATTGGCTGTTGTGGGGCCACATGGGGCTTCCGTT
CTGACGCGTTAACTTTCACCCACGGGGAACAGCAGCAGCAGCAGCAAGCG
AACCAGCAGGAAACGGATCCGAGTCGAGGGTCGGGTCCGGAATGCGTGGA
TCCTGCTGCGACGGGGTCCGGTATGAACCTGGCGGCGGCGCTTGCGGCTG
AGCGGCAAATCCGGGGGCCGCAGGAGGATGCGGCGGCAGCGAGGGCACCG
GGGACGCCGTGGAGGGTGTCGCTGATGAGGCTGCTGGAGGAGAGCGAAGG
AGGGGAGTCGGCGGCGGTGGAGAAGGAAAAAGAGGAGGAGAAGGGTGGTG
TTGTGGGGAATGATTCAGTGTGCTGCGTGTGCATGGGGAGGAAGAAAGGC
GCGGCGTTCATCCCATGTGGTCACACTTTTTGCAGGGTGTGTTCCAGGGA
ACTCTGGCTTAATCGAGGGTCTTGTCCCCTCTGCAATCGTTCCATCCTCG
AGATTCTCGACATTTTCTAG back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
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