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Transcript Overview
Name | Phvul.006G174300.2 |
Unique Name | Phvul.006G174300.2_Pv_G19833_v2.1 |
Type | mRNA |
Organism | Phaseolus vulgaris (Common bean) |
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
Phvul.006G174300.2_Pv_G19833_v2.1 | Phvul.006G174300.2_Pv_G19833_v2.1 | Phaseolus vulgaris | polypeptide |
Phvul.006G174300.2 | Phvul.006G174300.2_Pv_G19833_v2.1-protein | Phaseolus vulgaris | polypeptide |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Phvul.006G174300.2.v2.1.CDS.3 | Phvul.006G174300.2.v2.1.CDS.3_Pv_G19833_v2.1 | Phaseolus vulgaris | CDS |
Phvul.006G174300.2.v2.1.CDS.2 | Phvul.006G174300.2.v2.1.CDS.2_Pv_G19833_v2.1 | Phaseolus vulgaris | CDS |
Phvul.006G174300.2.v2.1.CDS.1 | Phvul.006G174300.2.v2.1.CDS.1_Pv_G19833_v2.1 | Phaseolus vulgaris | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Phvul.006G174300.2.v2.1.three_prime_UTR.1 | Phvul.006G174300.2.v2.1.three_prime_UTR.1_Pv_G19833_v2.1 | Phaseolus vulgaris | three_prime_UTR |
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Phvul.006G174300.2.v2.1.five_prime_UTR.1 | Phvul.006G174300.2.v2.1.five_prime_UTR.1_Pv_G19833_v2.1 | Phaseolus vulgaris | five_prime_UTR |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
Sequences
The
following sequences are available for this feature:
protein sequence of Phvul.006G174300.2_Pv_G19833_v2.1 >Phvul.006G174300.2_Pv_G19833_v2.1 ID=Phvul.006G174300.2_Pv_G19833_v2.1; Name=Phvul.006G174300.2_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=320bp MDQNRNEERGEILGPVHEGVDGNLSHLVEGVVIHAVDGNSLGDRVGDGGE AGTSVEVGKDLGSEKELKEGLEEVKGRDKYDQENISDDKLLGVDQGTSYN SNHLVNQQVIETVVVIESFETEYVNENNRKLEAKVNESGTFMKVPEGTSE TDKNSCVIDIKCSSLKKFSENSEGGQICRICHLPSVQSLDESETTVGPAA SSSTSSDLIQLGCACKDELGIAHLHCAEAWFKLKGNRLCEICSETATNVS GVSNYEFLEKWNERRFLENGGNSSRRFGGCCRGQPFCNFLMACLGVVDFW HTCYDASQSSRMLMLNHMS* back to topmRNA from alignment at Chr06:27713103..27716122- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Phvul.006G174300.2_Pv_G19833_v2.1 ID=Phvul.006G174300.2_Pv_G19833_v2.1; Name=Phvul.006G174300.2; organism=Phaseolus vulgaris; type=mRNA; length=3020bp; location=Sequence derived from: Chr06:27713103..27716122- (Phaseolus vulgaris ATATTTGGAGGTAAATCCCATCACTTTGCGGCTATTTGGAGGCTTGTTTT
CTTGGAGAGTGAGGTCATCCATCTCATAGGTGACACCCCCAATCTGCTTT
TATTTTAAATTGATTATTTCTTAAAATATCTGCTCCAATCAGGAAGTGGG
TCATTGGAAGATATGCATTTTCCACCTTCCATTTGATCACAATGTTCATC
CTCCGTAATTCATAAAGGGAGCGCTTTTAGGTGGGGTTCGTACTGGGCAT
TGTTTGGGAGTGGATTTACTGTCAATGGATCAAAACAGAAACGAAGAAAG
AGGTGAGATACTGGGTCCTGTTCATGAAGGGGTAGATGGGAATTTGAGTC
ATTTGGTTGAAGGGGTAGTTATTCATGCCGTAGATGGGAACAGCTTGGGT
GACAGAGTTGGTGATGGCGGAGAAGCTGGAACTTCAGTAGAGGTGGGTAA
AGATTTGGGATCTGAAAAGGAGCTAAAGGAGGGCCTTGAGGAAGTTAAGG
GTCGGGACAAGTATGATCAAGAAAATATCAGTGATGATAAATTACTTGGG
GTTGATCAGGGAACCAGTTATAATTCAAACCATTTGGTTAATCAGCAAGT
GATTGAAACTGTTGTTGTAATTGAGTCTTTTGAGACTGAGTATGTCAATG
AGAATAATAGGAAATTGGAAGCAAAAGTTAACGAATCGGGTACATTCATG
AAAGTACCAGAAGGGACGTCTGAAACTGATAAAAATTCATGTGTGATTGA
TATAAAATGCAGCAGCCTGAAAAAGTTTTCTGAGAATTCTGAAGGCGGAC
AGATTTGTAGGATTTGCCATCTGCCTTCTGTGCAGTCATTGGATGAAAGT
GAAACAACTGTTGGCCCTGCTGCTAGTAGTTCTACGAGTTCTGATTTGAT
TCAGCTTGGGTGTGCATGCAAAGATGAGCTAGGCATTGCCCATCTTCATT
GTGCTGAGGCGTGGTTCAAGCTTAAGGGGAACAGGTATATGTTTTTTCCA
AATACCAGTTTTGATTCTAGGCTGTAGATAAACAATAACATCAGCATATT
CTTTTAGGTTTTGAATTCCTAAATATGCAGGGTTTCATAATACTTAATTA
TCCAATTTGGCATAATTTCTGGAAGCAAATATTCATCTTGCCCTTTTCGT
TGCTTTATGTTTGTGCGTGCTGCAGTAACTTGATTACATGGAAAATTAAT
AATTTCAACAGTAGTGTGGTAAAGGTTTGATCTTTCTTGTATTTCCATGA
CTTGTCTTTTGAAACCTTGAGGTCTGTAGCATCCTTATACATGTGTTGAT
TGTGCTCTTAGATTAGAACTTGACTTTCCAATGCCATTATTAGCATTTTT
TCAAATCCTTTCAGGTTCATTCCTGGGCTTAGCTTAGTGTACTGCTATTT
GCTTTCGGTTGGTATTTCTTATAAAATGTGCAAGTGTGTAAAGCGTAACT
CAATCTCACAAAATTAACTTGTTGGGAAATTTTTTTCCCACTTATATAGT
GAATGTAATATCTATTGCAGTCACACATAGCTATGCAGTGCATATCAGTA
GCCATCAACCAATTTGGAGTTCCTATAGCTAATGAGATCCTATAAGGGGT
GAGTTGGACAAATTTGTCCAGACAGCCAGTGGATTTCCACCTTTAGGATG
TAAGATAATGGGCTAGAGCTAAACATGATTAGCAAACTGCTTCTAGTGGT
TGTAACTTGAGGTTAAATAATATCACGTTGGAAACTAGCAAGTTATAGCA
TTTGATCGTGATATTCATGTTGATGTCCTTGATATTTGAAAAGAAAGTCC
TCTTGTAACTGTCTTGGTGAAGATTCTTTGGGATCTGATGTTTCTCTGTT
CAGATGACACACGGGGCATGCTCTAGAAAAGTATGTTTATAATTTAATCA
ACGTTACAAAATGAATCTTCATAATTTTTATTAGATCATGGACTCATATT
CGTCAATTTTCCTGGAACAGAAGTGGGAACTACTTTTCCATTGAATAATT
TTGAGGTTCCTTTTTTTTTTTTAAGTTAGTTCTATTGGCAGTGACCAAAT
ATAAGATTGGTCTCCCATGTCAAGTGAAAATCAATTTGTTACAATCTAGT
ATAACTGATCATTGCCAATCCAAATTCTTGTATCATATATAAACGACTTG
TTTGGGCCGGCCTACAGATATATTCAGCACTTATTCAATAAGAGCTTATC
ACATGCAAACTTATTCTTAAATAGAGAAGAGCTTATTTAATCAATTTCTC
AATAAAATTAAGCCCTGTCTCACTACGTTTAGTCTGTCATTTGAATCACA
CACTGTTATTGGACTTGGTTAAAAACTAAATTGTTAGAGATATGATTCAC
CGTGAGGTTCCCTATAGCAATATCTTCTAATAAAAAAGAGCCCTTATAGA
AGTTGTAATCATCCTGACGTTTTTTTGTTCTATGCTATAGTTTTATTGTA
TACTGCCAAATTTGAAGATGGTCCCTTGCAAGTGAGTGCTTTGTTTTATA
ATCTATTATCAAATAAATTATTGATATTGGCTACCTTTTTTAATCACAGG
TTATGTGAAATATGTAGTGAAACTGCAACAAATGTTTCGGGTGTTAGTAA
TTATGAATTTTTGGAAAAGTGGAATGAAAGAAGGTTCTTGGAAAACGGTG
GCAACTCTTCCCGCAGGTTTGGTGGATGCTGTCGAGGACAGCCATTTTGT
AACTTCTTGATGGCATGCCTGGTAATAGCATTTGTTCTGCCATGGTTTTT
TCGTGTAAATATGTTCTAGCTGGTGAATCAAGCTCTATTACTTTTGCCTT
CGATTCTTCATACTCACTAAATACAGGGAGTGGTGGATTTCTGGCATACA
TGCTATGATGCATCACAATCTAGTAGGATGTTAATGCTTAACCACATGTC
CTAGTTTGCATGAAGATGAGAAGCTTCACATGATTACCTGCTCAAGTTGC
ATTTTTTGGAGAAGTGTTGTTCTGAGGTATATATATTACACACACAAACG
CAAAGTATTTTACATTTGGG back to topCoding sequence (CDS) from alignment at Chr06:27713103..27716122- >Phvul.006G174300.2_Pv_G19833_v2.1 ID=Phvul.006G174300.2_Pv_G19833_v2.1; Name=Phvul.006G174300.2; organism=Phaseolus vulgaris; type=CDS; length=960bp; location=Sequence derived from: Chr06:27713103..27716122- (Phaseolus vulgaris ATGGATCAAAACAGAAACGAAGAAAGAGGTGAGATACTGGGTCCTGTTCA TGAAGGGGTAGATGGGAATTTGAGTCATTTGGTTGAAGGGGTAGTTATTC ATGCCGTAGATGGGAACAGCTTGGGTGACAGAGTTGGTGATGGCGGAGAA GCTGGAACTTCAGTAGAGGTGGGTAAAGATTTGGGATCTGAAAAGGAGCT AAAGGAGGGCCTTGAGGAAGTTAAGGGTCGGGACAAGTATGATCAAGAAA ATATCAGTGATGATAAATTACTTGGGGTTGATCAGGGAACCAGTTATAAT TCAAACCATTTGGTTAATCAGCAAGTGATTGAAACTGTTGTTGTAATTGA GTCTTTTGAGACTGAGTATGTCAATGAGAATAATAGGAAATTGGAAGCAA AAGTTAACGAATCGGGTACATTCATGAAAGTACCAGAAGGGACGTCTGAA ACTGATAAAAATTCATGTGTGATTGATATAAAATGCAGCAGCCTGAAAAA GTTTTCTGAGAATTCTGAAGGCGGACAGATTTGTAGGATTTGCCATCTGC CTTCTGTGCAGTCATTGGATGAAAGTGAAACAACTGTTGGCCCTGCTGCT AGTAGTTCTACGAGTTCTGATTTGATTCAGCTTGGGTGTGCATGCAAAGA TGAGCTAGGCATTGCCCATCTTCATTGTGCTGAGGCGTGGTTCAAGCTTA AGGGGAACAGGTTATGTGAAATATGTAGTGAAACTGCAACAAATGTTTCG GGTGTTAGTAATTATGAATTTTTGGAAAAGTGGAATGAAAGAAGGTTCTT GGAAAACGGTGGCAACTCTTCCCGCAGGTTTGGTGGATGCTGTCGAGGAC AGCCATTTTGTAACTTCTTGATGGCATGCCTGGGAGTGGTGGATTTCTGG CATACATGCTATGATGCATCACAATCTAGTAGGATGTTAATGCTTAACCA CATGTCCTAG back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: Molecular Function
Term | Definition |
GO:0008270 | zinc ion binding |
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