Phvul.007G027400.1

Transcript Overview
NamePhvul.007G027400.1
Unique NamePhvul.007G027400.1_Pv_G19833_v2.1
TypemRNA
OrganismPhaseolus vulgaris (Common bean)
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr07supercontigChr07:2123439..2124089 -Phaseolus vulgaris G19833 genome v2.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Phaseolus vulgaris G19833 genome v2.12019-09-17
InterProScan: Phaseolus vulgaris G19833 genome v2.12019-10-18
BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot2019-10-18
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
pvpvL163Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvpvL207Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvpvL209Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvpvL236Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvpvR273Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pspvL669Pisum sativum Cameor genome v1aPisum sativum
pvvuR589Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pvvuR597Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pvvuR600Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pvvuR626Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caipvL0461Cicer arietinum ICC 4958 genome v2Cicer arietinum
caipvL0487Cicer arietinum ICC 4958 genome v2Cicer arietinum
crpvL419Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
capvL384Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
crpvL977Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
capvL802Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccpvL0116Cajanus cajan Asha genome v1.0Cajanus cajan
ccpvL0388Cajanus cajan Asha genome v1.0Cajanus cajan
ccpvL0926Cajanus cajan Asha genome v1.0Cajanus cajan
ccpvL1049Cajanus cajan Asha genome v1.0Cajanus cajan
anpvL0152Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0725Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0798Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0963Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL1179Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL1309Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
aspvL324Vigna angularis Jingnong 6 genome v1.1Vigna angularis
aspvL464Vigna angularis Jingnong 6 genome v1.1Vigna angularis
pvzwsR542Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvzwsR599Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvvfhR595Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvvfhR633Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvtifR588Vicia faba cv. Tiffany genome v1.0Vicia faba
pvtifR623Vicia faba cv. Tiffany genome v1.0Vicia faba
pvvrvR528Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvrvR533Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvrvR561Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvrvR565Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvrvR588Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvuaR516Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvuaR519Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvuaR522Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvuaR526Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvuaR533Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvssR671Vicia sativa cv. Studenica genome v1.0Vicia sativa
pvvssR679Vicia sativa cv. Studenica genome v1.0Vicia sativa
pvvssR746Vicia sativa cv. Studenica genome v1.0Vicia sativa
pvvssR757Vicia sativa cv. Studenica genome v1.0Vicia sativa
canpvL353Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canpvL776Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjpvL041Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjpvL328Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjpvL427Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjpvL756Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carpvL146Cicer arietinum
carpvL366Cicer arietinum
carpvL803Cicer arietinum
ccapvL316Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapvL626Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapvL788Cajanus cajan cv. Asha genome v2.0Cajanus cajan
pvvumR639Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvumR642Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvumR691Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvumR701Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvvaR645Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvvaR693Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvasR649Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvasR651Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvasR658Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvasR690Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvstR649Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvvstR655Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvvstR660Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvvstR671Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvvstR691Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvpvfR547Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR557Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR560Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR571Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR595Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvvunR542Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
pvvunR550Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
pvvunR551Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
pvvunR554Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
pvvunR577Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
Vigst.08G025200.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Psat6g227960.1Pisum sativum Cameor genome v1aPisum sativum
Ca_05489Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
LR48_mrnaVigan02g247500Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Cr_10499.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Vigun07g270200.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Psat06G0610800-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Ca_11844.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
XM_058916412.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Vigun07g270200.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-XM_014657981.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vigan.08G029300.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Va02G070330.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
jg40646.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vfaba.Tiffany.R1.3g133600.1Vicia faba cv. Tiffany genome v1.0Vicia faba
rna-TanjilR_16887Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vum_08G00251.1Vigna umbellata FF25 genome v1.0Vigna umbellata
evm.model.Chr07.248Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
rna-XM_004497035.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
rna-TanjilR_15854Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vfaba.Hedin2.R1.3g166720.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
rna-KK1_034012Cajanus cajan Asha genome v1.0Cajanus cajan
Cc_v2.0_05127.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
PvulFLAVERTChr07.1000150Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Phvul.007G027400Phvul.007G027400_Pv_G19833_v2.1Phaseolus vulgarisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Phvul.007G027400.1Phvul.007G027400.1_Pv_G19833_v2.1-proteinPhaseolus vulgarispolypeptide
Phvul.007G027400.1_Pv_G19833_v2.1Phvul.007G027400.1_Pv_G19833_v2.1Phaseolus vulgarispolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.007G027400.1.v2.1.five_prime_UTR.1Phvul.007G027400.1.v2.1.five_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgarisfive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.007G027400.1.v2.1.CDS.1Phvul.007G027400.1.v2.1.CDS.1_Pv_G19833_v2.1Phaseolus vulgarisCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.007G027400.1.v2.1.three_prime_UTR.1Phvul.007G027400.1.v2.1.three_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgaristhree_prime_UTR


Homology
The following BLAST results are available for this feature:
BLAST of Phvul.007G027400.1 vs.
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 27..57
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 59..74
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..80

Sequences
The following sequences are available for this feature:

protein sequence of Phvul.007G027400.1_Pv_G19833_v2.1

>Phvul.007G027400.1_Pv_G19833_v2.1 ID=Phvul.007G027400.1_Pv_G19833_v2.1; Name=Phvul.007G027400.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=153bp
MKRQRGVTVNAVVMPTNNPPNVEDVTALGKKKVKKEGEQKVGKSVLEEEE
RRESSRDMVGGFLQQQQQQQGARDGGVMGWNWEENNQNIPWLRGGVDEQM
SWGSTWVPAWDMDFLGGDAFTELYNDVVWDDDIWNLNNQIPIPLDRKRFD
WG*
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mRNA from alignment at Chr07:2123439..2124089-

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Phvul.007G027400.1_Pv_G19833_v2.1 ID=Phvul.007G027400.1_Pv_G19833_v2.1; Name=Phvul.007G027400.1; organism=Phaseolus vulgaris; type=mRNA; length=651bp; location=Sequence derived from: Chr07:2123439..2124089- (Phaseolus vulgaris
CATCGCTCCACCACTCCTTGTAATTTCTCTACCAACATGAAGAGGCAGAG AGGTGTGACTGTGAATGCTGTTGTTATGCCCACCAACAATCCCCCCAATG TTGAAGATGTGACGGCATTGGGGAAGAAGAAAGTGAAGAAAGAGGGTGAG CAAAAGGTGGGGAAGAGTGTGCTGGAGGAAGAGGAGAGAAGGGAAAGCTC TAGAGACATGGTGGGTGGGTTCTTGCAGCAGCAGCAGCAGCAACAAGGAG CAAGAGACGGTGGCGTGATGGGTTGGAATTGGGAGGAGAATAATCAGAAT ATCCCTTGGTTGAGAGGTGGGGTGGATGAGCAAATGTCATGGGGTTCCAC CTGGGTCCCTGCTTGGGACATGGACTTCTTGGGGGGTGATGCTTTCACGG AGCTCTACAATGATGTTGTTTGGGATGATGATATCTGGAATCTCAACAAT CAAATTCCAATTCCCCTCGATAGAAAGAGGTTTGATTGGGGGTAGAGATT GTAGTACTCTGCACTGTTTTCGAAGCCTCGTCGTCCTTATGTTTCCCTTA GTTAGGAATGGAATTTCAGTGTTTTCTTTCAATTATATATGTTTAGTTCT CTCTGTTTTCTCAATGCTAATTTGGCTGATCAAGGTTCGTGTCCACCTGC T
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Coding sequence (CDS) from alignment at Chr07:2123439..2124089-

>Phvul.007G027400.1_Pv_G19833_v2.1 ID=Phvul.007G027400.1_Pv_G19833_v2.1; Name=Phvul.007G027400.1; organism=Phaseolus vulgaris; type=CDS; length=459bp; location=Sequence derived from: Chr07:2123439..2124089- (Phaseolus vulgaris
ATGAAGAGGCAGAGAGGTGTGACTGTGAATGCTGTTGTTATGCCCACCAA
CAATCCCCCCAATGTTGAAGATGTGACGGCATTGGGGAAGAAGAAAGTGA
AGAAAGAGGGTGAGCAAAAGGTGGGGAAGAGTGTGCTGGAGGAAGAGGAG
AGAAGGGAAAGCTCTAGAGACATGGTGGGTGGGTTCTTGCAGCAGCAGCA
GCAGCAACAAGGAGCAAGAGACGGTGGCGTGATGGGTTGGAATTGGGAGG
AGAATAATCAGAATATCCCTTGGTTGAGAGGTGGGGTGGATGAGCAAATG
TCATGGGGTTCCACCTGGGTCCCTGCTTGGGACATGGACTTCTTGGGGGG
TGATGCTTTCACGGAGCTCTACAATGATGTTGTTTGGGATGATGATATCT
GGAATCTCAACAATCAAATTCCAATTCCCCTCGATAGAAAGAGGTTTGAT
TGGGGGTAG
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