Phvul.007G057800.1
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Phvul.007G057800.1 vs. DB:Swiss
Match: OFP12_ARATH (Transcription repressor OFP12 OS=Arabidopsis thaliana OX=3702 GN=OFP12 PE=1 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 2.854e-24 Identity = 55/112 (49.11%), Postives = 70/112 (62.50%), Query Frame = 1
Query: 166 SVFASQRFFFSSPGTSNSIVESPDTRTFVHTG-------GGVTVPKY--SLNPYVDFLRSMHEMIRSRQVLDITEDWDYLHELLLCYLAVNPTHTHKYIIRAFTDLVLQLLS 474
+V AS+RFFFSSPG SNSI +SPD R + GG V Y S +PY DF RSM EMI + +++LHELLL YL++N THK+IIRAF D+++ LLS
Sbjct: 109 AVLASRRFFFSSPGCSNSITDSPDLRCRDNYDTATRLLTGGTAVKHYVQSPDPYNDFRRSMQEMIDAVTNAGDLRRYEFLHELLLSYLSLNAADTHKFIIRAFADILVSLLS 220
BLAST of Phvul.007G057800.1 vs. DB:Swiss
Match: OFP16_ARATH (Transcription repressor OFP16 OS=Arabidopsis thaliana OX=3702 GN=OFP16 PE=2 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 2.940e-21 Identity = 54/145 (37.24%), Postives = 75/145 (51.72%), Query Frame = 1
Query: 154 PDFASVFASQRFFFSSPGTSNSIVESPDTRT---------------------------------FVHTGGGVTVPKYSLNPYVDFLRSMHEMIRS-----RQVLDITEDWDYLHELLLCYLAVNPTHTHKYIIRAFTDLVLQLLS 474
PD ++ FAS+RFFFSSPG SN+I +SP+ R+ + G VT S +P DF RSM EMI + D + +D+L ELLL YL++NP THK++IRAF+D+++ LLS
Sbjct: 94 PDVSAAFASRRFFFSSPGRSNAITDSPEPRSREFSDNYDDATITSTKKKKKKVYDNSVTTTTTRLISGGTAVTQHVDSPDPLTDFRRSMQEMIDAAIDAGELSRDPNDGYDFLDELLLTYLSLNPADTHKFVIRAFSDILVSLLS 238
BLAST of Phvul.007G057800.1 vs. DB:Swiss
Match: OFP11_ARATH (Transcription repressor OFP11 OS=Arabidopsis thaliana OX=3702 GN=OFP11 PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 6.865e-18 Identity = 39/77 (50.65%), Postives = 53/77 (68.83%), Query Frame = 1
Query: 262 GGVTVPKY--SLNPYVDFLRSMHEMIRSRQVL-DITEDWDYLHELLLCYLAVNPTHTHKYIIRAFTDLVLQLLSSTP 483
GG + K+ S +PY DF RSM EM+ +R + D+ D +YLHELL CYL +NP HTH++I+ AF D +L LLS +P
Sbjct: 99 GGTAIMKHIESPDPYRDFGRSMREMVEARDLTRDVVADREYLHELLFCYLYLNPKHTHRFIVSAFADTLLWLLSPSP 175
BLAST of Phvul.007G057800.1 vs. DB:Swiss
Match: OPF15_ARATH (Transcription repressor OFP15 OS=Arabidopsis thaliana OX=3702 GN=OFP15 PE=1 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 2.697e-12 Identity = 37/100 (37.00%), Postives = 54/100 (54.00%), Query Frame = 1
Query: 175 ASQRFFFSSPGTSNSIVESPDTR--TFVHTGGGVTVPKYSLNPYVDFLRSMHEMIRSRQVLDITEDWDYLHELLLCYLAVNPTHTHKYIIRAFTDLVLQL 468
+S+R F S G +NSI+E ++ G + S +PY DF RSM EM+ + + DW L +LLL +L VN +H+YI AF DL++ L
Sbjct: 77 SSERLIFESKGETNSILEEATSKREEEDEEEGFMLFSLESDDPYSDFKRSMEEMVEAHA---LHHDWKSLEKLLLQFLKVNAKTSHRYIFAAFVDLLMNL 173
BLAST of Phvul.007G057800.1 vs. DB:Swiss
Match: OFP14_ARATH (Transcription repressor OFP14 OS=Arabidopsis thaliana OX=3702 GN=OFP14 PE=1 SV=1) HSP 1 Score: 64.3142 bits (155), Expect = 1.998e-11 Identity = 33/88 (37.50%), Postives = 51/88 (57.95%), Query Frame = 1
Query: 208 TSNSIVESPDTRTFVHTGGGVTVPKYSLNPYVDFLRSMHEMIRSRQVLDITE-DWDYLHELLLCYLAVNPTHTHKYIIRAFTDLVLQL 468
T+++ E T V + V +Y+ P DF +SM EM+ S+ + +E DWD + ELL CYL +N +HK+I+ AF DL++ L
Sbjct: 173 TTSTSSERQSRSTLVLPENCIAVLRYTDEPQEDFRQSMVEMMESKLGMRESEVDWDLMEELLFCYLDLNDKKSHKFILSAFVDLIIAL 260
BLAST of Phvul.007G057800.1 vs. DB:Swiss
Match: OFP18_ARATH (Transcription repressor OFP18 OS=Arabidopsis thaliana OX=3702 GN=OFP18 PE=2 SV=1) HSP 1 Score: 63.5438 bits (153), Expect = 4.486e-11 Identity = 39/100 (39.00%), Postives = 53/100 (53.00%), Query Frame = 1
Query: 175 ASQRFFFSSPGTSNSIVESPDTRT--FVHTGGGVTVPKYSLNPYVDFLRSMHEMIRSRQVLDITEDWDYLHELLLCYLAVNPTHTHKYIIRAFTDLVLQL 468
+S+R F GTSNSI+E R G + + S +PY DF SM +M+ +V + DW L +LL +L VN +H+YI AF DLVL L
Sbjct: 104 SSKRLIFERRGTSNSILEEATKRDDHEEEEDGLMLLSLESNDPYTDFKNSMEKMV---EVHVLHHDWISLEKLLFWFLKVNVKASHRYIFAAFVDLVLNL 200
BLAST of Phvul.007G057800.1 vs. DB:Swiss
Match: OPF13_ARATH (Transcription repressor OFP13 OS=Arabidopsis thaliana OX=3702 GN=OFP13 PE=1 SV=1) HSP 1 Score: 59.3066 bits (142), Expect = 9.435e-10 Identity = 40/120 (33.33%), Postives = 58/120 (48.33%), Query Frame = 1
Query: 169 VFASQRFFFSSPGTSNSIVESPDTRT--------FVHTGG---------GVTVPKYSLNPYVDFLRSMHEMIRSRQVLDITEDWDYLHELLLCYLAVNPTHTHKYIIRAFTDLVLQLLSS 477
V S+R FF PG ++SI+E + ++ V G V V S +PY DF RSM EM+ S ++ +DW+ L +L YL +N +H I+ AF DL+ L S
Sbjct: 99 VVRSERLFFD-PGVTSSILEEIEEKSKSDLKSKETVAVGEDRSTPIEEISVAVAMESEDPYGDFRRSMEEMVTSHG--ELAKDWESLESMLAWYLRMNGRKSHGVIVSAFVDLLSGLSDS 215
BLAST of Phvul.007G057800.1 vs. DB:Swiss
Match: OFP10_ARATH (Transcription repressor OFP10 OS=Arabidopsis thaliana OX=3702 GN=OFP10 PE=2 SV=1) HSP 1 Score: 56.6102 bits (135), Expect = 5.430e-9 Identity = 32/98 (32.65%), Postives = 51/98 (52.04%), Query Frame = 1
Query: 175 ASQRFFFSSPGTSNSIVESPDTRTFVHTGGGVTVPKYSLNPYVDFLRSMHEMIRSRQVLDITEDWDYLHELLLCYLAVNPTHTHKYIIRAFTDLVLQL 468
+S + P S +++ SP + V + K S+NP+ D+ +SM++MI R + E L ELL C+L +NP+ H I+RAF D+ L
Sbjct: 71 SSHSHYTPGPPVSPTVLRSPCPKI----DESVAMAKESINPFEDYKKSMNQMIEERYI----ETESELKELLRCFLDINPSPQHNLIVRAFVDVCSHL 160
BLAST of Phvul.007G057800.1 vs. DB:Swiss
Match: OFP7_ARATH (Transcription repressor OFP7 OS=Arabidopsis thaliana OX=3702 GN=OFP7 PE=2 SV=1) HSP 1 Score: 56.225 bits (134), Expect = 1.639e-8 Identity = 27/68 (39.71%), Postives = 43/68 (63.24%), Query Frame = 1
Query: 265 GVTVPKYSLNPYVDFLRSMHEMIRSRQVLDITEDWDYLHELLLCYLAVNPTHTHKYIIRAFTDLVLQL 468
GV V K S +PY DF SM EMI +++ ++ E L +LL C+L++N H+ I+RAF+++ + L
Sbjct: 227 GVAVVKKSEDPYEDFKGSMMEMIVEKKMFEVAE----LEQLLSCFLSLNAKRHHRAIVRAFSEIWVAL 290 The following BLAST results are available for this feature:
BLAST of Phvul.007G057800.1 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot) Total hits: 9
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
Sequences
The
following sequences are available for this feature:
protein sequence of Phvul.007G057800.1_Pv_G19833_v2.1 >Phvul.007G057800.1_Pv_G19833_v2.1 ID=Phvul.007G057800.1_Pv_G19833_v2.1; Name=Phvul.007G057800.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=181bpback to top mRNA from alignment at Chr07:4866360..4868154- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Phvul.007G057800.1_Pv_G19833_v2.1 ID=Phvul.007G057800.1_Pv_G19833_v2.1; Name=Phvul.007G057800.1; organism=Phaseolus vulgaris; type=mRNA; length=1795bp; location=Sequence derived from: Chr07:4866360..4868154- (Phaseolus vulgarisback to top Coding sequence (CDS) from alignment at Chr07:4866360..4868154- >Phvul.007G057800.1_Pv_G19833_v2.1 ID=Phvul.007G057800.1_Pv_G19833_v2.1; Name=Phvul.007G057800.1; organism=Phaseolus vulgaris; type=CDS; length=543bp; location=Sequence derived from: Chr07:4866360..4868154- (Phaseolus vulgarisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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