Phvul.007G105100.1

Transcript Overview
NamePhvul.007G105100.1
Unique NamePhvul.007G105100.1_Pv_G19833_v2.1
TypemRNA
OrganismPhaseolus vulgaris (Common bean)
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr07supercontigChr07:12327003..12329525 -Phaseolus vulgaris G19833 genome v2.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Phaseolus vulgaris G19833 genome v2.12019-09-17
InterProScan: Phaseolus vulgaris G19833 genome v2.12019-10-18
BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot2019-10-18
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
pvpvL037Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pspvL240Pisum sativum Cameor genome v1aPisum sativum
pspvL669Pisum sativum Cameor genome v1aPisum sativum
pvvuR585Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pvvuR626Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caipvL0495Cicer arietinum ICC 4958 genome v2Cicer arietinum
crpvL291Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
crpvL428Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
capvL384Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccpvL0209Cajanus cajan Asha genome v1.0Cajanus cajan
anpvL0210Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0801Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0970Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
aspvL462Vigna angularis Jingnong 6 genome v1.1Vigna angularis
pvzwsR552Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvzwsR598Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvvfhR640Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvvfhR659Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvvfhR681Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvtifR629Vicia faba cv. Tiffany genome v1.0Vicia faba
pvtifR647Vicia faba cv. Tiffany genome v1.0Vicia faba
pvvrvR559Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvrvR589Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvuaR533Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvssR667Vicia sativa cv. Studenica genome v1.0Vicia sativa
pvvssR706Vicia sativa cv. Studenica genome v1.0Vicia sativa
pvvssR745Vicia sativa cv. Studenica genome v1.0Vicia sativa
canpvL239Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canpvL353Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjpvL427Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjpvL523Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carpvL246Cicer arietinum
carpvL366Cicer arietinum
ccapvL316Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapvL408Cajanus cajan cv. Asha genome v2.0Cajanus cajan
pvvumR642Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvumR723Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvvaR644Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvvaR680Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvasR680Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvasR690Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvstR683Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvvstR691Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvpvfR541Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR571Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvvunR577Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
Cc_v2.0_04410.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
rna-XM_014657024.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Psat06G0479300-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
rna-XM_004496120.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
jg41745.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
evm.model.Chr07.905.1.62113174Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Va02G059360.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vfaba.Tiffany.R1.3g089320.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Ca_08412Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Vum_08G00952.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Ca_09547.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
XM_058914121.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Vigun07g193100.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
rna-TanjilR_19426Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-KK1_040379Cajanus cajan Asha genome v1.0Cajanus cajan
Vigst.08G092600.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
LR48_mrnaVigan02g179900Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vfaba.Hedin2.R1.3g112400.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Vigan.08G117300.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Cr_09065.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Vigun07g193100.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
PvulFLAVERTChr07.1000661Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Phvul.007G105100Phvul.007G105100_Pv_G19833_v2.1Phaseolus vulgarisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Phvul.007G105100.1Phvul.007G105100.1_Pv_G19833_v2.1-proteinPhaseolus vulgarispolypeptide
Phvul.007G105100.1_Pv_G19833_v2.1Phvul.007G105100.1_Pv_G19833_v2.1Phaseolus vulgarispolypeptide


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.007G105100.1.v2.1.three_prime_UTR.2Phvul.007G105100.1.v2.1.three_prime_UTR.2_Pv_G19833_v2.1Phaseolus vulgaristhree_prime_UTR
Phvul.007G105100.1.v2.1.three_prime_UTR.1Phvul.007G105100.1.v2.1.three_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgaristhree_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.007G105100.1.v2.1.CDS.5Phvul.007G105100.1.v2.1.CDS.5_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.007G105100.1.v2.1.CDS.4Phvul.007G105100.1.v2.1.CDS.4_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.007G105100.1.v2.1.CDS.3Phvul.007G105100.1.v2.1.CDS.3_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.007G105100.1.v2.1.CDS.2Phvul.007G105100.1.v2.1.CDS.2_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.007G105100.1.v2.1.CDS.1Phvul.007G105100.1.v2.1.CDS.1_Pv_G19833_v2.1Phaseolus vulgarisCDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.007G105100.1.v2.1.five_prime_UTR.1Phvul.007G105100.1.v2.1.five_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgarisfive_prime_UTR


Homology
BLAST of Phvul.007G105100.1 vs. DB:Swiss
Match: OTU_ARATH (OTU domain-containing protein At3g57810 OS=Arabidopsis thaliana OX=3702 GN=At3g57810 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 1.410e-61
Identity = 88/142 (61.97%), Postives = 114/142 (80.28%), Query Frame = 1
Query:  481 YADYRVTGVPADGRCLFRAIAHGDCLRNGEKAPDENCQRELADELRAKVVDELLKRREETEWFIEGDFDTYVKRIQQPFVWGGEPELLMASHVLKTPISVFMRATGSVGLVNIAKYGEEYRNDKEENSINVLFHGYGHYDIL 906
            Y DY + G+P DGRCLFR++AHG CLR+G+ AP E  QRELADELR +V DE ++RR+ETEWF+EGDFDTYV++I+ P VWGGEPEL MASHVL+ PI+V+M+   + GL++IA+YG+EY  D   + I VL+HG+GHYD L
Sbjct:  165 YTDYSIIGIPGDGRCLFRSVAHGFCLRSGKLAPGEKMQRELADELRTRVADEFIQRRQETEWFVEGDFDTYVRQIRDPHVWGGEPELFMASHVLQMPITVYMKDDKAGGLISIAEYGQEYGKD---DPIRVLYHGFGHYDAL 303          
BLAST of Phvul.007G105100.1 vs. DB:Swiss
Match: OTU6B_XENLA (Deubiquitinase OTUD6B OS=Xenopus laevis OX=8355 GN=otud6b PE=2 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 1.722e-9
Identity = 45/150 (30.00%), Postives = 70/150 (46.67%), Query Frame = 1
Query:  487 DYRVTGVPADGRCLFRAIAHGDCLRNGEKAPDENCQRELADELRAKVVDEL--LKRREETEWFIEGDFDTYVKRIQQPFVWGGEPELLMASHVLKTPISVFMRATGSVGLVNIAKYGEEYRNDKEENSINVLF--HGYG---HYDILETF 915
            + ++  +P+DG C++RAI H      G      N + + AD ++ +  D L  L      + + + +F  Y   I     WGG+ EL   SH+LKTPI V      S+ +V     GEEY N      I +++  H YG   HY+ +E  
Sbjct:  149 ELQIRQIPSDGHCMYRAIEH-QLNEQGNSLTVANLRSQTADYMQKRAEDFLPFLTNSSTGDMYTQEEFQKYCTDIVNTPAWGGQLELRALSHILKTPIEVIQ--AESLPIV----IGEEYSN----KPITLVYMRHAYGLGEHYNSVEQL 287          
BLAST of Phvul.007G105100.1 vs. DB:Swiss
Match: OTU6B_XENTR (Deubiquitinase OTUD6B OS=Xenopus tropicalis OX=8364 GN=otud6b PE=2 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 5.762e-7
Identity = 41/150 (27.33%), Postives = 68/150 (45.33%), Query Frame = 1
Query:  487 DYRVTGVPADGRCLFRAIAHGDCLRNGEKAPDENCQRELADELRAKVVDEL--LKRREETEWFIEGDFDTYVKRIQQPFVWGGEPELLMASHVLKTPISVFMRATGSVGLVNIAKYGEEYRNDKEENSINVLF--HGYG---HYDILETF 915
            + ++  +P+DG C++RAI H      G      N + + AD ++    D L  L      + + + +F  Y   I     WGG+ EL   SH+LKT I V    +  + +      GEEY +     +I +++  H YG   HY+ +E  
Sbjct:  149 ELQIRQIPSDGHCMYRAIEH-QLRERGNDLTVANLRSQTADYMQNHAEDFLPFLTNSSTGDMYTQEEFLKYCTDIVNTPAWGGQLELRALSHILKTAIEVIQAESSPIVI------GEEYSS----KAITLVYMRHAYGLGEHYNSVELL 287          
The following BLAST results are available for this feature:
BLAST of Phvul.007G105100.1 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot)
Total hits: 3
Match NameE-valueIdentityDescription
OTU_ARATH1.410e-6161.97OTU domain-containing protein At3g57810 OS=Arabido... [more]
OTU6B_XENLA1.722e-930.00Deubiquitinase OTUD6B OS=Xenopus laevis OX=8355 GN... [more]
OTU6B_XENTR5.762e-727.33Deubiquitinase OTUD6B OS=Xenopus tropicalis OX=836... [more]
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InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.90.70.80coord: 153..304
e-value: 2.0E-30
score: 107.5
IPR003323OTU domainPFAMPF02338OTUcoord: 170..299
e-value: 1.7E-21
score: 77.0
IPR003323OTU domainPROSITEPS50802OTUcoord: 164..305
score: 16.661
IPR038765Papain-like cysteine peptidase superfamilySUPERFAMILY54001Cysteine proteinasescoord: 164..303

Sequences
The following sequences are available for this feature:

protein sequence of Phvul.007G105100.1_Pv_G19833_v2.1

>Phvul.007G105100.1_Pv_G19833_v2.1 ID=Phvul.007G105100.1_Pv_G19833_v2.1; Name=Phvul.007G105100.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=306bp
MRRIGTNPAHDSFSSPMLGVLCATRPRPWLFSHVHASLPRLVHASVSLSA
SPPRRHHSSACKIFGSAGGAASIWHAIMPRSGDRFRRGVVPVHDLKGEGS
WNVAWDTRPARWLHRPDSAWLLFGVCACLAPPGCVDVVTDFEAVAVDESC
GVLKVEASADYADYRVTGVPADGRCLFRAIAHGDCLRNGEKAPDENCQRE
LADELRAKVVDELLKRREETEWFIEGDFDTYVKRIQQPFVWGGEPELLMA
SHVLKTPISVFMRATGSVGLVNIAKYGEEYRNDKEENSINVLFHGYGHYD
ILETF*
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mRNA from alignment at Chr07:12327003..12329525-

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Phvul.007G105100.1_Pv_G19833_v2.1 ID=Phvul.007G105100.1_Pv_G19833_v2.1; Name=Phvul.007G105100.1; organism=Phaseolus vulgaris; type=mRNA; length=2523bp; location=Sequence derived from: Chr07:12327003..12329525- (Phaseolus vulgaris
GAAAGAAGGGAGAGTGTGAGAGACACGCGGGAGTAGGTGCGTAGGGAAAG AAATATAGATTAGTTTGTTGTTTAAATTTGATGATTCCAATAGTGGTGTG GTGTGAGTAGTTGTAATTTGTCTTCCAAAAAACACCCATGCCGTCACGCA TGGAAACTACGTGTGTGGGTGATGCGTAGGATAGGAACAAACCCAGCGCA CGATAGTTTTTCTTCACCCATGCTTGGAGTTCTCTGCGCCACTCGTCCAA GGCCCTGGCTCTTCTCCCACGTCCATGCCTCGCTGCCTCGTCTAGTTCAC GCCTCCGTCTCCCTCTCCGCCTCGCCGCCTCGCCGCCACCATTCCAGCGC CTGCAAAATCTTCGGCTCCGCTGGCGGCGCGGCCTCCATATGGCATGCTA TAATGCCCCGCAGCGGTGACAGATTCCGCCGCGGCGTTGTCCCCGTGCAT GACCTGAAGGGAGAGGGATCGTGGAATGTCGCATGGGACACGCGGCCTGC GCGGTGGCTCCATCGTCCTGATTCCGCGTGGCTCCTCTTCGGAGTCTGTG CTTGCCTCGCGCCGCCGGGTTGCGTGGACGTCGTTACCGATTTCGAAGCT GTTGCGGTGGACGAGAGTTGCGGAGTTCTGAAAGTGGAGGCTTCTGCTGA TTACGCGGATTACAGAGTCACTGGTTTGTTATTTTTTTTATATTATTTGT TTTTATTAATTTAAAATGTTTAATTGTTTAATCGGAATAAAATGAAATAT AATTCATATTTGGTTTATAAAACGCATTGGATTGGATGTGACATATACTT GAATGAAATTGGTTGGATCACTGATATTGTTTTGATAGCCTATAGCCTTT TTGCTTTTTGGATTAAGCATTGTTCTGGTTATTGATGGTCTGTGGGTAGA TGATTGAACGGGATGAAGAGTTTTATGTTTGTTGGAATTTTCTAAAGAAG TTAATACTGAGAGATTTTTAAATTGGTATTGTTGAGTTACATTTTTGATT GTTGGTGGTATTGCTTAGCATGGAGGTAAATAAATTGTGTATGAGTTTAA TATGTGTATTCATTTGTGTGCTATATCACTGAATGGTGAAGGGGTACCTG CTGATGGTCGGTGTCTGTTTAGAGCAATAGCTCATGGAGATTGCTTGAGA AATGGAGAAAAAGCACCTGATGAGAATTGTCAGAGGGAACTGGCTGATGA ATTGAGAGCTAAAGTATGATCACTATATCACTATGTTACAGAGTTTAAAA TAATAAAAAGTTTTTGTTCTATTTCATTTGCTTTTTTAACAACCTTTGTA TCCCAATTTAGGTAGTAGATGAGTTGCTGAAGAGGCGGGAGGAAACAGAA TGGTAAGTTTTGTAATTTGAAGATGTATGATTCTTTTGGATTGTCTTTTT CTTGGTTTGGCTTGGTTATCATGTTATGTTTGATGTATCTTTAGGTTTAT AGAAGGGGATTTCGATACATATGTGAAGAGAATTCAACAGCCTTTTGTGT GGGGTGGAGAACCAGAGCTGTTGATGGCTTCTCATGTTTTGAAGTAAGTT TTAGAATTGAAATCCTTCTAGTTCTAGTAAGAACAGAAGAATTGAAATTT TGTACTGCTTATACACTTTTATTTAAGGATAATTGAGAAGCATAAGATGT TTGTCCATCCATGTATATTAATTACTAGTTTTAGCTCACTAGAATTGTTG TCATAACAACGTCTATTAATTGGGCGTAATGTACATAACGTAGGCTAGAC AAACTCCGATTACCATTCACAATTTGAACACCCAAATTACCATAACAAAA GTTATTGTAAAAAATGTTGGTTAATCTTTCAAACAATTAGCAATGTGGAT ATATAATTCGTGAATCTGAGACTGAAGACACTAGTGTAATATACAGCCTA TATTGTTTTGTAGAAACCATTCTAATTTATTTTATGTAATTGTGATGGTA TGCCTTCTTTGGATTTTATTGTTCTTTATCTAACTCTGCTGCATACTTTT TCAGGACACCAATATCTGTTTTCATGAGAGCCACAGGATCGGTTGGTTTG GTAAACATAGCAAAATATGGTGAAGAGTATAGGAATGATAAAGAGGAGAA TTCCATAAATGTGCTATTTCATGGATATGGTCACTATGACATCCTAGAGA CTTTTTGATAGAAAAAAAAAACTGCCTTAGAATAAACACATAGTACAGAA CAAACTACTCGACTTGGTCTTGCAGTTTCAAATTCCACCTATTGAGAGCT TTTGGGATTCATTTTAGTGTTTTGGTGAATTTAGTAACTTTTTACCAGTG ATTCAATTCAAGCGAACCATTTGTAGTTGTTTTTGTTTACAGCTGATATC AAGAATTCAATATAGGAGAAGAAACAATAATAAATTTCTGCAATAATAAT TTGGGACTTGCGATTAAGTATTGCAAGTTAACACATGGCTGTTATGGGGT ATACATTTTATTGGACTGTATATTTGTTAAGTAATGGTTCTGTAGTGTTT TCAACTTAGTGACGTTATTGGGG
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Coding sequence (CDS) from alignment at Chr07:12327003..12329525-

>Phvul.007G105100.1_Pv_G19833_v2.1 ID=Phvul.007G105100.1_Pv_G19833_v2.1; Name=Phvul.007G105100.1; organism=Phaseolus vulgaris; type=CDS; length=918bp; location=Sequence derived from: Chr07:12327003..12329525- (Phaseolus vulgaris
ATGCGTAGGATAGGAACAAACCCAGCGCACGATAGTTTTTCTTCACCCAT
GCTTGGAGTTCTCTGCGCCACTCGTCCAAGGCCCTGGCTCTTCTCCCACG
TCCATGCCTCGCTGCCTCGTCTAGTTCACGCCTCCGTCTCCCTCTCCGCC
TCGCCGCCTCGCCGCCACCATTCCAGCGCCTGCAAAATCTTCGGCTCCGC
TGGCGGCGCGGCCTCCATATGGCATGCTATAATGCCCCGCAGCGGTGACA
GATTCCGCCGCGGCGTTGTCCCCGTGCATGACCTGAAGGGAGAGGGATCG
TGGAATGTCGCATGGGACACGCGGCCTGCGCGGTGGCTCCATCGTCCTGA
TTCCGCGTGGCTCCTCTTCGGAGTCTGTGCTTGCCTCGCGCCGCCGGGTT
GCGTGGACGTCGTTACCGATTTCGAAGCTGTTGCGGTGGACGAGAGTTGC
GGAGTTCTGAAAGTGGAGGCTTCTGCTGATTACGCGGATTACAGAGTCAC
TGGGGTACCTGCTGATGGTCGGTGTCTGTTTAGAGCAATAGCTCATGGAG
ATTGCTTGAGAAATGGAGAAAAAGCACCTGATGAGAATTGTCAGAGGGAA
CTGGCTGATGAATTGAGAGCTAAAGTAGTAGATGAGTTGCTGAAGAGGCG
GGAGGAAACAGAATGGTTTATAGAAGGGGATTTCGATACATATGTGAAGA
GAATTCAACAGCCTTTTGTGTGGGGTGGAGAACCAGAGCTGTTGATGGCT
TCTCATGTTTTGAAGACACCAATATCTGTTTTCATGAGAGCCACAGGATC
GGTTGGTTTGGTAAACATAGCAAAATATGGTGAAGAGTATAGGAATGATA
AAGAGGAGAATTCCATAAATGTGCTATTTCATGGATATGGTCACTATGAC
ATCCTAGAGACTTTTTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR003323OTU_dom
IPR038765Papain-like_cys_pep_sf