|
Transcript Overview
Name | Phvul.007G105100.1 |
Unique Name | Phvul.007G105100.1_Pv_G19833_v2.1 |
Type | mRNA |
Organism | Phaseolus vulgaris (Common bean) |
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
Phvul.007G105100.1 | Phvul.007G105100.1_Pv_G19833_v2.1-protein | Phaseolus vulgaris | polypeptide |
Phvul.007G105100.1_Pv_G19833_v2.1 | Phvul.007G105100.1_Pv_G19833_v2.1 | Phaseolus vulgaris | polypeptide |
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Phvul.007G105100.1.v2.1.three_prime_UTR.2 | Phvul.007G105100.1.v2.1.three_prime_UTR.2_Pv_G19833_v2.1 | Phaseolus vulgaris | three_prime_UTR |
Phvul.007G105100.1.v2.1.three_prime_UTR.1 | Phvul.007G105100.1.v2.1.three_prime_UTR.1_Pv_G19833_v2.1 | Phaseolus vulgaris | three_prime_UTR |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Phvul.007G105100.1.v2.1.CDS.5 | Phvul.007G105100.1.v2.1.CDS.5_Pv_G19833_v2.1 | Phaseolus vulgaris | CDS |
Phvul.007G105100.1.v2.1.CDS.4 | Phvul.007G105100.1.v2.1.CDS.4_Pv_G19833_v2.1 | Phaseolus vulgaris | CDS |
Phvul.007G105100.1.v2.1.CDS.3 | Phvul.007G105100.1.v2.1.CDS.3_Pv_G19833_v2.1 | Phaseolus vulgaris | CDS |
Phvul.007G105100.1.v2.1.CDS.2 | Phvul.007G105100.1.v2.1.CDS.2_Pv_G19833_v2.1 | Phaseolus vulgaris | CDS |
Phvul.007G105100.1.v2.1.CDS.1 | Phvul.007G105100.1.v2.1.CDS.1_Pv_G19833_v2.1 | Phaseolus vulgaris | CDS |
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Phvul.007G105100.1.v2.1.five_prime_UTR.1 | Phvul.007G105100.1.v2.1.five_prime_UTR.1_Pv_G19833_v2.1 | Phaseolus vulgaris | five_prime_UTR |
Homology
BLAST of Phvul.007G105100.1 vs. DB:Swiss
Match: OTU_ARATH (OTU domain-containing protein At3g57810 OS=Arabidopsis thaliana OX=3702 GN=At3g57810 PE=2 SV=1) HSP 1 Score: 201.445 bits (511), Expect = 1.410e-61 Identity = 88/142 (61.97%), Postives = 114/142 (80.28%), Query Frame = 1
Query: 481 YADYRVTGVPADGRCLFRAIAHGDCLRNGEKAPDENCQRELADELRAKVVDELLKRREETEWFIEGDFDTYVKRIQQPFVWGGEPELLMASHVLKTPISVFMRATGSVGLVNIAKYGEEYRNDKEENSINVLFHGYGHYDIL 906
Y DY + G+P DGRCLFR++AHG CLR+G+ AP E QRELADELR +V DE ++RR+ETEWF+EGDFDTYV++I+ P VWGGEPEL MASHVL+ PI+V+M+ + GL++IA+YG+EY D + I VL+HG+GHYD L
Sbjct: 165 YTDYSIIGIPGDGRCLFRSVAHGFCLRSGKLAPGEKMQRELADELRTRVADEFIQRRQETEWFVEGDFDTYVRQIRDPHVWGGEPELFMASHVLQMPITVYMKDDKAGGLISIAEYGQEYGKD---DPIRVLYHGFGHYDAL 303
BLAST of Phvul.007G105100.1 vs. DB:Swiss
Match: OTU6B_XENLA (Deubiquitinase OTUD6B OS=Xenopus laevis OX=8355 GN=otud6b PE=2 SV=1) HSP 1 Score: 61.2326 bits (147), Expect = 1.722e-9 Identity = 45/150 (30.00%), Postives = 70/150 (46.67%), Query Frame = 1
Query: 487 DYRVTGVPADGRCLFRAIAHGDCLRNGEKAPDENCQRELADELRAKVVDEL--LKRREETEWFIEGDFDTYVKRIQQPFVWGGEPELLMASHVLKTPISVFMRATGSVGLVNIAKYGEEYRNDKEENSINVLF--HGYG---HYDILETF 915
+ ++ +P+DG C++RAI H G N + + AD ++ + D L L + + + +F Y I WGG+ EL SH+LKTPI V S+ +V GEEY N I +++ H YG HY+ +E
Sbjct: 149 ELQIRQIPSDGHCMYRAIEH-QLNEQGNSLTVANLRSQTADYMQKRAEDFLPFLTNSSTGDMYTQEEFQKYCTDIVNTPAWGGQLELRALSHILKTPIEVIQ--AESLPIV----IGEEYSN----KPITLVYMRHAYGLGEHYNSVEQL 287
BLAST of Phvul.007G105100.1 vs. DB:Swiss
Match: OTU6B_XENTR (Deubiquitinase OTUD6B OS=Xenopus tropicalis OX=8364 GN=otud6b PE=2 SV=1) HSP 1 Score: 53.9138 bits (128), Expect = 5.762e-7 Identity = 41/150 (27.33%), Postives = 68/150 (45.33%), Query Frame = 1
Query: 487 DYRVTGVPADGRCLFRAIAHGDCLRNGEKAPDENCQRELADELRAKVVDEL--LKRREETEWFIEGDFDTYVKRIQQPFVWGGEPELLMASHVLKTPISVFMRATGSVGLVNIAKYGEEYRNDKEENSINVLF--HGYG---HYDILETF 915
+ ++ +P+DG C++RAI H G N + + AD ++ D L L + + + +F Y I WGG+ EL SH+LKT I V + + + GEEY + +I +++ H YG HY+ +E
Sbjct: 149 ELQIRQIPSDGHCMYRAIEH-QLRERGNDLTVANLRSQTADYMQNHAEDFLPFLTNSSTGDMYTQEEFLKYCTDIVNTPAWGGQLELRALSHILKTAIEVIQAESSPIVI------GEEYSS----KAITLVYMRHAYGLGEHYNSVELL 287
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
Sequences
The
following sequences are available for this feature:
protein sequence of Phvul.007G105100.1_Pv_G19833_v2.1 >Phvul.007G105100.1_Pv_G19833_v2.1 ID=Phvul.007G105100.1_Pv_G19833_v2.1; Name=Phvul.007G105100.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=306bp MRRIGTNPAHDSFSSPMLGVLCATRPRPWLFSHVHASLPRLVHASVSLSA SPPRRHHSSACKIFGSAGGAASIWHAIMPRSGDRFRRGVVPVHDLKGEGS WNVAWDTRPARWLHRPDSAWLLFGVCACLAPPGCVDVVTDFEAVAVDESC GVLKVEASADYADYRVTGVPADGRCLFRAIAHGDCLRNGEKAPDENCQRE LADELRAKVVDELLKRREETEWFIEGDFDTYVKRIQQPFVWGGEPELLMA SHVLKTPISVFMRATGSVGLVNIAKYGEEYRNDKEENSINVLFHGYGHYD ILETF* back to topmRNA from alignment at Chr07:12327003..12329525- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Phvul.007G105100.1_Pv_G19833_v2.1 ID=Phvul.007G105100.1_Pv_G19833_v2.1; Name=Phvul.007G105100.1; organism=Phaseolus vulgaris; type=mRNA; length=2523bp; location=Sequence derived from: Chr07:12327003..12329525- (Phaseolus vulgaris GAAAGAAGGGAGAGTGTGAGAGACACGCGGGAGTAGGTGCGTAGGGAAAG
AAATATAGATTAGTTTGTTGTTTAAATTTGATGATTCCAATAGTGGTGTG
GTGTGAGTAGTTGTAATTTGTCTTCCAAAAAACACCCATGCCGTCACGCA
TGGAAACTACGTGTGTGGGTGATGCGTAGGATAGGAACAAACCCAGCGCA
CGATAGTTTTTCTTCACCCATGCTTGGAGTTCTCTGCGCCACTCGTCCAA
GGCCCTGGCTCTTCTCCCACGTCCATGCCTCGCTGCCTCGTCTAGTTCAC
GCCTCCGTCTCCCTCTCCGCCTCGCCGCCTCGCCGCCACCATTCCAGCGC
CTGCAAAATCTTCGGCTCCGCTGGCGGCGCGGCCTCCATATGGCATGCTA
TAATGCCCCGCAGCGGTGACAGATTCCGCCGCGGCGTTGTCCCCGTGCAT
GACCTGAAGGGAGAGGGATCGTGGAATGTCGCATGGGACACGCGGCCTGC
GCGGTGGCTCCATCGTCCTGATTCCGCGTGGCTCCTCTTCGGAGTCTGTG
CTTGCCTCGCGCCGCCGGGTTGCGTGGACGTCGTTACCGATTTCGAAGCT
GTTGCGGTGGACGAGAGTTGCGGAGTTCTGAAAGTGGAGGCTTCTGCTGA
TTACGCGGATTACAGAGTCACTGGTTTGTTATTTTTTTTATATTATTTGT
TTTTATTAATTTAAAATGTTTAATTGTTTAATCGGAATAAAATGAAATAT
AATTCATATTTGGTTTATAAAACGCATTGGATTGGATGTGACATATACTT
GAATGAAATTGGTTGGATCACTGATATTGTTTTGATAGCCTATAGCCTTT
TTGCTTTTTGGATTAAGCATTGTTCTGGTTATTGATGGTCTGTGGGTAGA
TGATTGAACGGGATGAAGAGTTTTATGTTTGTTGGAATTTTCTAAAGAAG
TTAATACTGAGAGATTTTTAAATTGGTATTGTTGAGTTACATTTTTGATT
GTTGGTGGTATTGCTTAGCATGGAGGTAAATAAATTGTGTATGAGTTTAA
TATGTGTATTCATTTGTGTGCTATATCACTGAATGGTGAAGGGGTACCTG
CTGATGGTCGGTGTCTGTTTAGAGCAATAGCTCATGGAGATTGCTTGAGA
AATGGAGAAAAAGCACCTGATGAGAATTGTCAGAGGGAACTGGCTGATGA
ATTGAGAGCTAAAGTATGATCACTATATCACTATGTTACAGAGTTTAAAA
TAATAAAAAGTTTTTGTTCTATTTCATTTGCTTTTTTAACAACCTTTGTA
TCCCAATTTAGGTAGTAGATGAGTTGCTGAAGAGGCGGGAGGAAACAGAA
TGGTAAGTTTTGTAATTTGAAGATGTATGATTCTTTTGGATTGTCTTTTT
CTTGGTTTGGCTTGGTTATCATGTTATGTTTGATGTATCTTTAGGTTTAT
AGAAGGGGATTTCGATACATATGTGAAGAGAATTCAACAGCCTTTTGTGT
GGGGTGGAGAACCAGAGCTGTTGATGGCTTCTCATGTTTTGAAGTAAGTT
TTAGAATTGAAATCCTTCTAGTTCTAGTAAGAACAGAAGAATTGAAATTT
TGTACTGCTTATACACTTTTATTTAAGGATAATTGAGAAGCATAAGATGT
TTGTCCATCCATGTATATTAATTACTAGTTTTAGCTCACTAGAATTGTTG
TCATAACAACGTCTATTAATTGGGCGTAATGTACATAACGTAGGCTAGAC
AAACTCCGATTACCATTCACAATTTGAACACCCAAATTACCATAACAAAA
GTTATTGTAAAAAATGTTGGTTAATCTTTCAAACAATTAGCAATGTGGAT
ATATAATTCGTGAATCTGAGACTGAAGACACTAGTGTAATATACAGCCTA
TATTGTTTTGTAGAAACCATTCTAATTTATTTTATGTAATTGTGATGGTA
TGCCTTCTTTGGATTTTATTGTTCTTTATCTAACTCTGCTGCATACTTTT
TCAGGACACCAATATCTGTTTTCATGAGAGCCACAGGATCGGTTGGTTTG
GTAAACATAGCAAAATATGGTGAAGAGTATAGGAATGATAAAGAGGAGAA
TTCCATAAATGTGCTATTTCATGGATATGGTCACTATGACATCCTAGAGA
CTTTTTGATAGAAAAAAAAAACTGCCTTAGAATAAACACATAGTACAGAA
CAAACTACTCGACTTGGTCTTGCAGTTTCAAATTCCACCTATTGAGAGCT
TTTGGGATTCATTTTAGTGTTTTGGTGAATTTAGTAACTTTTTACCAGTG
ATTCAATTCAAGCGAACCATTTGTAGTTGTTTTTGTTTACAGCTGATATC
AAGAATTCAATATAGGAGAAGAAACAATAATAAATTTCTGCAATAATAAT
TTGGGACTTGCGATTAAGTATTGCAAGTTAACACATGGCTGTTATGGGGT
ATACATTTTATTGGACTGTATATTTGTTAAGTAATGGTTCTGTAGTGTTT
TCAACTTAGTGACGTTATTGGGG back to topCoding sequence (CDS) from alignment at Chr07:12327003..12329525- >Phvul.007G105100.1_Pv_G19833_v2.1 ID=Phvul.007G105100.1_Pv_G19833_v2.1; Name=Phvul.007G105100.1; organism=Phaseolus vulgaris; type=CDS; length=918bp; location=Sequence derived from: Chr07:12327003..12329525- (Phaseolus vulgaris ATGCGTAGGATAGGAACAAACCCAGCGCACGATAGTTTTTCTTCACCCAT GCTTGGAGTTCTCTGCGCCACTCGTCCAAGGCCCTGGCTCTTCTCCCACG TCCATGCCTCGCTGCCTCGTCTAGTTCACGCCTCCGTCTCCCTCTCCGCC TCGCCGCCTCGCCGCCACCATTCCAGCGCCTGCAAAATCTTCGGCTCCGC TGGCGGCGCGGCCTCCATATGGCATGCTATAATGCCCCGCAGCGGTGACA GATTCCGCCGCGGCGTTGTCCCCGTGCATGACCTGAAGGGAGAGGGATCG TGGAATGTCGCATGGGACACGCGGCCTGCGCGGTGGCTCCATCGTCCTGA TTCCGCGTGGCTCCTCTTCGGAGTCTGTGCTTGCCTCGCGCCGCCGGGTT GCGTGGACGTCGTTACCGATTTCGAAGCTGTTGCGGTGGACGAGAGTTGC GGAGTTCTGAAAGTGGAGGCTTCTGCTGATTACGCGGATTACAGAGTCAC TGGGGTACCTGCTGATGGTCGGTGTCTGTTTAGAGCAATAGCTCATGGAG ATTGCTTGAGAAATGGAGAAAAAGCACCTGATGAGAATTGTCAGAGGGAA CTGGCTGATGAATTGAGAGCTAAAGTAGTAGATGAGTTGCTGAAGAGGCG GGAGGAAACAGAATGGTTTATAGAAGGGGATTTCGATACATATGTGAAGA GAATTCAACAGCCTTTTGTGTGGGGTGGAGAACCAGAGCTGTTGATGGCT TCTCATGTTTTGAAGACACCAATATCTGTTTTCATGAGAGCCACAGGATC GGTTGGTTTGGTAAACATAGCAAAATATGGTGAAGAGTATAGGAATGATA AAGAGGAGAATTCCATAAATGTGCTATTTCATGGATATGGTCACTATGAC ATCCTAGAGACTTTTTGA back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
|