Phvul.007G192200.1
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Phvul.007G192200.1 vs. DB:Swiss
Match: LSH3_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana OX=3702 GN=LSH3 PE=1 SV=1) HSP 1 Score: 227.639 bits (579), Expect = 1.086e-74 Identity = 117/125 (93.60%), Postives = 122/125 (97.60%), Query Frame = 1
Query: 133 RYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHXXXXXXXXXXLRQAWGSLDALIGRLRAAYEENGGKPEINPFGARAVRLYLREVRELQSKARGISYE 507
RYENQKRRDWNTFGQYL+NHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHT IC FYGHPNPPAPCPCPLRQAWGSLDALIGRLRAA+EENGGKPE NPFGARAVRLYLREVR++QSKARG+SYE
Sbjct: 54 RYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTNICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLREVRDMQSKARGVSYE 178
BLAST of Phvul.007G192200.1 vs. DB:Swiss
Match: G1L6_ORYSJ (Protein G1-like6 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L6 PE=1 SV=1) HSP 1 Score: 228.794 bits (582), Expect = 1.260e-74 Identity = 115/125 (92.00%), Postives = 123/125 (98.40%), Query Frame = 1
Query: 133 RYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHXXXXXXXXXXLRQAWGSLDALIGRLRAAYEENGGKPEINPFGARAVRLYLREVRELQSKARGISYE 507
RYE+QKRRDWNTFGQYL+NHRPPLSLSRCSGAHVLEFL+Y+DQFGKTKVHTP+CPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGG PE+NPFGARAVRLYLREVRE Q++ARGISYE
Sbjct: 80 RYESQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLKYMDQFGKTKVHTPVCPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGTPEMNPFGARAVRLYLREVRETQARARGISYE 204
BLAST of Phvul.007G192200.1 vs. DB:Swiss
Match: G1L6_ORYSI (Protein G1-like6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_09389 PE=3 SV=1) HSP 1 Score: 228.794 bits (582), Expect = 1.260e-74 Identity = 115/125 (92.00%), Postives = 123/125 (98.40%), Query Frame = 1
Query: 133 RYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHXXXXXXXXXXLRQAWGSLDALIGRLRAAYEENGGKPEINPFGARAVRLYLREVRELQSKARGISYE 507
RYE+QKRRDWNTFGQYL+NHRPPLSLSRCSGAHVLEFL+Y+DQFGKTKVHTP+CPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGG PE+NPFGARAVRLYLREVRE Q++ARGISYE
Sbjct: 80 RYESQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLKYMDQFGKTKVHTPVCPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGTPEMNPFGARAVRLYLREVRETQARARGISYE 204
BLAST of Phvul.007G192200.1 vs. DB:Swiss
Match: LSH4_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LSH4 PE=1 SV=1) HSP 1 Score: 223.402 bits (568), Expect = 2.557e-73 Identity = 114/125 (91.20%), Postives = 120/125 (96.00%), Query Frame = 1
Query: 133 RYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHXXXXXXXXXXLRQAWGSLDALIGRLRAAYEENGGKPEINPFGARAVRLYLREVRELQSKARGISYE 507
RYENQKRRDWNTFGQYL+NHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHT +CPF+GHPNPPAPC CPLRQAWGSLDALIGRLRAA+EENGG PE NPFGARAVRLYLREVR+ Q+KARGISYE
Sbjct: 48 RYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAKARGISYE 172
BLAST of Phvul.007G192200.1 vs. DB:Swiss
Match: G1L5_ORYSJ (Protein G1-like5 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L5 PE=1 SV=1) HSP 1 Score: 219.935 bits (559), Expect = 7.151e-72 Identity = 111/125 (88.80%), Postives = 120/125 (96.00%), Query Frame = 1
Query: 133 RYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHXXXXXXXXXXLRQAWGSLDALIGRLRAAYEENGGKPEINPFGARAVRLYLREVRELQSKARGISYE 507
RYE+QKRRDWNTFGQYL+NHRPPLSL+RCSGAHVLEFLRYLDQFGKTKVH P CPF+GHP PPAPCPCPLRQAWGSLDAL+GRLRAAYEENGG+PE NPFGARAVRLYLREVRE Q++ARG+SYE
Sbjct: 40 RYESQKRRDWNTFGQYLRNHRPPLSLARCSGAHVLEFLRYLDQFGKTKVHAPACPFFGHPAPPAPCPCPLRQAWGSLDALVGRLRAAYEENGGRPENNPFGARAVRLYLREVREHQARARGVSYE 164
BLAST of Phvul.007G192200.1 vs. DB:Swiss
Match: G1L4_ORYSJ (Protein G1-like4 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L4 PE=1 SV=2) HSP 1 Score: 212.231 bits (539), Expect = 7.344e-69 Identity = 108/125 (86.40%), Postives = 119/125 (95.20%), Query Frame = 1
Query: 133 RYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHXXXXXXXXXXLRQAWGSLDALIGRLRAAYEENGGKPEINPFGARAVRLYLREVRELQSKARGISYE 507
RYE QKRRDWNTFGQYL+NHRPPLSL++CSGAHVLEFLRYLDQFGKTKVHT CPF+GHP+PPAPCPCPLRQAWGSLDAL+GRLRAA+EENGG+PE NPF ARAVRLYLREVRE Q++ARG+SYE
Sbjct: 41 RYEAQKRRDWNTFGQYLRNHRPPLSLAQCSGAHVLEFLRYLDQFGKTKVHTAACPFFGHPSPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGRPESNPFAARAVRLYLREVREHQARARGVSYE 165
BLAST of Phvul.007G192200.1 vs. DB:Swiss
Match: G1L4_ORYSI (Protein G1-like4 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_16643 PE=3 SV=1) HSP 1 Score: 212.231 bits (539), Expect = 7.344e-69 Identity = 108/125 (86.40%), Postives = 119/125 (95.20%), Query Frame = 1
Query: 133 RYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHXXXXXXXXXXLRQAWGSLDALIGRLRAAYEENGGKPEINPFGARAVRLYLREVRELQSKARGISYE 507
RYE QKRRDWNTFGQYL+NHRPPLSL++CSGAHVLEFLRYLDQFGKTKVHT CPF+GHP+PPAPCPCPLRQAWGSLDAL+GRLRAA+EENGG+PE NPF ARAVRLYLREVRE Q++ARG+SYE
Sbjct: 41 RYEAQKRRDWNTFGQYLRNHRPPLSLAQCSGAHVLEFLRYLDQFGKTKVHTAACPFFGHPSPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGRPESNPFAARAVRLYLREVREHQARARGVSYE 165
BLAST of Phvul.007G192200.1 vs. DB:Swiss
Match: LSH6_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 OS=Arabidopsis thaliana OX=3702 GN=LSH6 PE=1 SV=1) HSP 1 Score: 209.149 bits (531), Expect = 1.153e-67 Identity = 101/125 (80.80%), Postives = 114/125 (91.20%), Query Frame = 1
Query: 133 RYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHXXXXXXXXXXLRQAWGSLDALIGRLRAAYEENGGKPEINPFGARAVRLYLREVRELQSKARGISYE 507
RYE+QKRRDWNTF QYLKNH+PPL+LSRCSGAHV+EFL+YLDQFGKTKVH CP++GH PP+PC CPL+QAWGSLDALIGRLRAAYEENGG+P+ NPF ARAVR+YLREVRE Q+KARGI YE
Sbjct: 31 RYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTKVHVAACPYFGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLREVRESQAKARGIPYE 155
BLAST of Phvul.007G192200.1 vs. DB:Swiss
Match: G1L3_ORYSJ (Protein G1-like3 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L3 PE=1 SV=1) HSP 1 Score: 210.305 bits (534), Expect = 1.238e-67 Identity = 107/125 (85.60%), Postives = 117/125 (93.60%), Query Frame = 1
Query: 133 RYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHXXXXXXXXXXLRQAWGSLDALIGRLRAAYEENGGKPEINPFGARAVRLYLREVRELQSKARGISYE 507
RYE QKRRDWNTFGQYL+NHRPPL L++CSGAHVLEFLRYLDQFGKTKVHT CPF+GHPNPPAPCPCPLRQAWGSLDAL+GRLRAA+EENGG+PE NPF RAVRLYLREVRE Q++ARG+SYE
Sbjct: 73 RYEAQKRRDWNTFGQYLRNHRPPLGLAQCSGAHVLEFLRYLDQFGKTKVHTAACPFFGHPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGRPESNPFAVRAVRLYLREVREHQARARGVSYE 197
BLAST of Phvul.007G192200.1 vs. DB:Swiss
Match: G1L3_ORYSI (Protein G1-like3 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_05696 PE=3 SV=1) HSP 1 Score: 210.305 bits (534), Expect = 1.238e-67 Identity = 107/125 (85.60%), Postives = 117/125 (93.60%), Query Frame = 1
Query: 133 RYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHXXXXXXXXXXLRQAWGSLDALIGRLRAAYEENGGKPEINPFGARAVRLYLREVRELQSKARGISYE 507
RYE QKRRDWNTFGQYL+NHRPPL L++CSGAHVLEFLRYLDQFGKTKVHT CPF+GHPNPPAPCPCPLRQAWGSLDAL+GRLRAA+EENGG+PE NPF RAVRLYLREVRE Q++ARG+SYE
Sbjct: 73 RYEAQKRRDWNTFGQYLRNHRPPLGLAQCSGAHVLEFLRYLDQFGKTKVHTAACPFFGHPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGRPESNPFAVRAVRLYLREVREHQARARGVSYE 197 The following BLAST results are available for this feature:
BLAST of Phvul.007G192200.1 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
Sequences
The
following sequences are available for this feature:
protein sequence of Phvul.007G192200.1_Pv_G19833_v2.1 >Phvul.007G192200.1_Pv_G19833_v2.1 ID=Phvul.007G192200.1_Pv_G19833_v2.1; Name=Phvul.007G192200.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=210bpback to top mRNA from alignment at Chr07:31268916..31270619+ Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Phvul.007G192200.1_Pv_G19833_v2.1 ID=Phvul.007G192200.1_Pv_G19833_v2.1; Name=Phvul.007G192200.1; organism=Phaseolus vulgaris; type=mRNA; length=1704bp; location=Sequence derived from: Chr07:31268916..31270619+ (Phaseolus vulgarisback to top Coding sequence (CDS) from alignment at Chr07:31268916..31270619+ >Phvul.007G192200.1_Pv_G19833_v2.1 ID=Phvul.007G192200.1_Pv_G19833_v2.1; Name=Phvul.007G192200.1; organism=Phaseolus vulgaris; type=CDS; length=630bp; location=Sequence derived from: Chr07:31268916..31270619+ (Phaseolus vulgarisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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