Phvul.007G194800.1

Transcript Overview
NamePhvul.007G194800.1
Unique NamePhvul.007G194800.1_Pv_G19833_v2.1
TypemRNA
OrganismPhaseolus vulgaris (Common bean)
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr07supercontigChr07:31654881..31657197 -Phaseolus vulgaris G19833 genome v2.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Phaseolus vulgaris G19833 genome v2.12019-09-17
InterProScan: Phaseolus vulgaris G19833 genome v2.12019-10-18
BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot2019-10-18
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
pvpvL031Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvpvR270Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pspvL238Pisum sativum Cameor genome v1aPisum sativum
pvvuR579Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pvvuR624Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pvvuR631Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caipvL0435Cicer arietinum ICC 4958 genome v2Cicer arietinum
crpvL398Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
capvL250Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
capvL363Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccpvL0861Cajanus cajan Asha genome v1.0Cajanus cajan
ccpvL0931Cajanus cajan Asha genome v1.0Cajanus cajan
anpvL0985Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL1045Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL1241Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL1396Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
aspvL456Vigna angularis Jingnong 6 genome v1.1Vigna angularis
pvzwsR548Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvzwsR577Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvzwsR596Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvvfhR605Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvvfhR630Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvvfhR656Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvvfhR677Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvtifR595Vicia faba cv. Tiffany genome v1.0Vicia faba
pvtifR665Vicia faba cv. Tiffany genome v1.0Vicia faba
pvvrvR553Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvrvR575Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvrvR579Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvrvR586Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvuaR508Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvuaR547Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvuaR556Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvuaR564Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvssR696Vicia sativa cv. Studenica genome v1.0Vicia sativa
pvvssR699Vicia sativa cv. Studenica genome v1.0Vicia sativa
pvvssR725Vicia sativa cv. Studenica genome v1.0Vicia sativa
pvvssR767Vicia sativa cv. Studenica genome v1.0Vicia sativa
canpvL235Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canpvL331Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canpvL369Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjpvL409Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjpvL418Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjpvL518Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carpvL242Cicer arietinum
carpvL342Cicer arietinum
carpvL377Cicer arietinum
ccapvL294Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapvL307Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapvL314Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapvL398Cajanus cajan cv. Asha genome v2.0Cajanus cajan
pvvumR672Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvumR676Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvumR685Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvumR717Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvvaR649Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvvaR726Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvasR673Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvstR677Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvvasR719Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvasR726Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvasR734Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvstR721Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvvstR727Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvpvfR536Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR570Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR578Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR589Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvvunR534Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
pvvunR582Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
rna-XM_014656974.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vfaba.Hedin2.R1.3g068720.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Vfaba.Hedin2.R1.3g060360.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
rna-KK1_026987Cajanus cajan Asha genome v1.0Cajanus cajan
rna-XM_004493708.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
rna-XM_014639780.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
rna-KK1_009949Cajanus cajan Asha genome v1.0Cajanus cajan
Vigst.08G177100.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
rna-TanjilR_30768Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Psat3g058600.1Pisum sativum Cameor genome v1aPisum sativum
jg32532.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vigan.08G203400.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
rna-XM_012714985.2Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Vigst.04G195400.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Cc_v2.0_04262.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Vigun07g097800.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Cc_v2.0_02553.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Psat03G0208200-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
rna-TanjilR_24553Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vum_08G01075.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Vfaba.Tiffany.R1.5g099320.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Va02G048190.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Va03G070190.2Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
XM_058914991.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Vigun07g097800.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
jg2203.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
rna-XM_014656598.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Ca_12215Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
XM_058881976.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
rna-TanjilR_28359Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
jg1845.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vfaba.Tiffany.R1.3g049920.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Vigan.08G134000.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Vigun01g141500.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
evm.model.Chr01.1377Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vigan.04G307800.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Cc_v2.0_03508.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Va02G002320.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
rna-XM_014655642.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vigst.08G246900.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Vum_08G02672.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Cc_v2.0_07582.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Vum_04G02205.1Vigna umbellata FF25 genome v1.0Vigna umbellata
evm.model.Chr07.1049Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
evm.model.Chr07.1670Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vigun01g141500.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Vfaba.Hedin2.R1.5g123600.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Psat06G0152800-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Vum_08G01601.1Vigna umbellata FF25 genome v1.0Vigna umbellata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Phvul.007G272400.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
PvulFLAVERTChr07.1001245Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Phvul.001G159500.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
PvulFLAVERTChr01.1038Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
PvulFLAVERTChr07.825Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
PvulFLAVERTChr07.1001704Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Phvul.007G194800Phvul.007G194800_Pv_G19833_v2.1Phaseolus vulgarisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Phvul.007G194800.1Phvul.007G194800.1_Pv_G19833_v2.1-proteinPhaseolus vulgarispolypeptide
Phvul.007G194800.1_Pv_G19833_v2.1Phvul.007G194800.1_Pv_G19833_v2.1Phaseolus vulgarispolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.007G194800.1.v2.1.CDS.5Phvul.007G194800.1.v2.1.CDS.5_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.007G194800.1.v2.1.CDS.4Phvul.007G194800.1.v2.1.CDS.4_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.007G194800.1.v2.1.CDS.3Phvul.007G194800.1.v2.1.CDS.3_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.007G194800.1.v2.1.CDS.2Phvul.007G194800.1.v2.1.CDS.2_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.007G194800.1.v2.1.CDS.1Phvul.007G194800.1.v2.1.CDS.1_Pv_G19833_v2.1Phaseolus vulgarisCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.007G194800.1.v2.1.three_prime_UTR.1Phvul.007G194800.1.v2.1.three_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgaristhree_prime_UTR


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.007G194800.1.v2.1.five_prime_UTR.1Phvul.007G194800.1.v2.1.five_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgarisfive_prime_UTR


Homology
The following BLAST results are available for this feature:
BLAST of Phvul.007G194800.1 vs.
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008637HR-like lesion-inducerPFAMPF05514HR_lesioncoord: 1..138
e-value: 3.2E-58
score: 195.8

Sequences
The following sequences are available for this feature:

protein sequence of Phvul.007G194800.1_Pv_G19833_v2.1

>Phvul.007G194800.1_Pv_G19833_v2.1 ID=Phvul.007G194800.1_Pv_G19833_v2.1; Name=Phvul.007G194800.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=157bp
MAFASFLGRVLFASVFILSAYQEFNEFGADGGPAAKALRPKFDAFTHRVH
SQVGFQLPQIDTKLLIAGAIALKGLGGVIFIFGSSFGALLLLLHQLIATP
IHYDFYNYESEDKEFTQLFIKFTQNMALFGALLFFIGMKNSIPKRQHKKT
PKTKTY*
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mRNA from alignment at Chr07:31654881..31657197-

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Phvul.007G194800.1_Pv_G19833_v2.1 ID=Phvul.007G194800.1_Pv_G19833_v2.1; Name=Phvul.007G194800.1; organism=Phaseolus vulgaris; type=mRNA; length=2317bp; location=Sequence derived from: Chr07:31654881..31657197- (Phaseolus vulgaris
CTTATTCTCTCTTTTAATTTGAAATCTTCGTCTTTTTCTTTCTTTTTCTG
TCTGAGGAAAAGTAGTAGAAAAAACACAGTGCCCTAGATTTGCTCTTCTC
TGCTTCGGAAGAAAGTGAAACAAAACAACGCAAAATTGCAATGGCTTTCG
CTTCTTTCCTTGGCAGAGTCCTCTTCGCTTCCGTCTTTATACTCTCTGCT
TATCAAGAGTCAGTACTCTCTTTTTTTTCTTCATTTTTTCATATATTTTT
CCTCAGTTGATTTGTTCCGTAAGATGTTGTTTGTGTAATTTTAATTCAAA
CAGATGAAGTAGTAAAAAGTTGTGGATTTTTCGTATGTTTGTTTAATAGA
TTCAGTTATTTACATGCTGCAGTAGTTGGATCCGTAACGTTTAAGGTTTG
GAACCGTTTCTCCGAGTAAAATAACCGCGTAGATCTGCGTTTAGTTTGTG
TTTTTTGTTCTACTTAGATTACGTAACGTTGTTGTCTTAGATTTCTTGTT
TTTAATTTGAGGGAACTTGTGAACAAGTTATGCTCAGATTTGGTAGAAGT
GCGAGGAACTCGATTCTATTTTTGCTTTTTAATATTCTTAATTGTGAGAT
TAGCCGTCAGTTATTGTCAAGTCTGCAGATTTGTATTTCTGGATTAGTTT
TTATGGTGAAATATGGTATAGTTGTCGTTATGTTTGAAAGTTACCATATT
TTTCCGTGTTTTTGTGCAATTCTGCGTTGACTTTATCCTGTTTTCTTTCT
TACTGAATTGAGTTACTTTGAATTATTGAGTGTGACTTCATTATTACGAT
AAAATTGTGCTTGATTTAGAAATTATTCATTGTGAGTTTGGTGGGGGTGA
CGGTGTTGGTTGGTTGTACTAAATTATTCTTTACCTTTCTTTTTTATACA
AGTATATATACAGTTCATCCCCTCTTTTTTGTGCTGAAGTGAAGTTTCTT
TTTAACTCTGTCCTCTTCTTTACTATAGATTTAATGAATTTGGAGCTGAT
GGTGGGCCTGCAGCGAAAGCACTCAGACCAAAGTTTGATGCATTTACACA
TCGCGTGCATTCTCAAGTTGGCTTTCAACTTCCACAGATTGATGTTAGTC
TCCCTTCTCTCTATCATTTGTATCTTTTTCTGGAAAATTAGGTCTGTTCA
TCGTGTCTTCATTTCAAAGTAATTGGTGAGTTAATTAAATACTATAATAA
ATATCTATTTAATACTTTCTCATAGAATTTGCAATTTATCTTGAACTTTT
GCCCATACCAAATTTAGGGTCCTCGCCAGGCAAGATTTTTCAGTCTGTGT
TGACCATGAAAAGTATTAGAGCTATCACCTTAGTTTACATAAAAAAATGT
ACTTTGTATCTGGCATGCATATTATATTATCTTGTATGGTAGAATTTATC
TGATATTGTTGATGTCCTGAACAGACGAAACTTTTAATTGCTGGGGCTAT
TGCTCTGAAGGGCCTTGGAGGAGTTATTTTCATATTTGGCAGCTCTTTTG
GAGCTCTCCTTCTGGTTTGTATTCAAATTTTCTTCAATACATTGGATTTC
ATATTCTTCTCACATGCTCCTTATTCTAGTTTTGACTCTTTATTTAATTT
ATTTATTGTGGCTGCAGCTCCTGCATCAGCTTATTGCGACTCCTATTCAC
TATGATTTCTACAATTATGAGAGTGAGGACAAAGAATTTACTCAACTTTT
CATCAAATTTACACAGGTCAGAGAAGTAACTTATTTTTAAAAAAAATTAT
TTTCAATACAATGTTCCCAGATGTATACTTACACTTGTTAAATATATTAT
AATTCCTTGCAGAATATGGCTCTTTTTGGGGCTCTGTTGTTTTTCATTGG
CATGAAGAACTCCATCCCTAAAAGGCAACACAAGAAGACCCCAAAAACAA
AAACCTATTAGTAGCAGCAGCATTGGAGGACCCCCTTTCAAGGAGTGGGG
GCTGTTGTTTCCTGGCTCTTCATCATATCCTCACAAATGTCCAGGATTTG
TGTGGATATTCTCTTCTCTGGTTCAGAATCAATCTTCCTCCCTTTGAGTT
TTGTAGTTTTTGGTTCACTTGGATTAAATTATTGTCTATTATTTTGTATG
ATCTTGTTATCACGGCTTTAGGAACTATCTTTCAGTTGCCCTTGTCTGTC
AAAAATGAAAACAAAAGAATGAGAAGCCTTTACGCTTAAACTTCAGAATG
TCAATTTCATTCTGTTCTATCTTTCTTGATGTAAGTCTTCAATGCCTGGC
ATTTGAAGTTATGTAACTTAACTAGAGTTCTCCACTTCAGCCCATGAGTG
TGTGCCCGCTCTTCCCT
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Coding sequence (CDS) from alignment at Chr07:31654881..31657197-

>Phvul.007G194800.1_Pv_G19833_v2.1 ID=Phvul.007G194800.1_Pv_G19833_v2.1; Name=Phvul.007G194800.1; organism=Phaseolus vulgaris; type=CDS; length=471bp; location=Sequence derived from: Chr07:31654881..31657197- (Phaseolus vulgaris
ATGGCTTTCGCTTCTTTCCTTGGCAGAGTCCTCTTCGCTTCCGTCTTTAT
ACTCTCTGCTTATCAAGAATTTAATGAATTTGGAGCTGATGGTGGGCCTG
CAGCGAAAGCACTCAGACCAAAGTTTGATGCATTTACACATCGCGTGCAT
TCTCAAGTTGGCTTTCAACTTCCACAGATTGATACGAAACTTTTAATTGC
TGGGGCTATTGCTCTGAAGGGCCTTGGAGGAGTTATTTTCATATTTGGCA
GCTCTTTTGGAGCTCTCCTTCTGCTCCTGCATCAGCTTATTGCGACTCCT
ATTCACTATGATTTCTACAATTATGAGAGTGAGGACAAAGAATTTACTCA
ACTTTTCATCAAATTTACACAGAATATGGCTCTTTTTGGGGCTCTGTTGT
TTTTCATTGGCATGAAGAACTCCATCCCTAAAAGGCAACACAAGAAGACC
CCAAAAACAAAAACCTATTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR008637HR_lesion