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Transcript Overview
| Name | Phvul.007G197700.1 |
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| Unique Name | Phvul.007G197700.1_Pv_G19833_v2.1 |
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| Type | mRNA |
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| Organism | Phaseolus vulgaris (Common bean) |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Phvul.007G197700.1_Pv_G19833_v2.1 | Phvul.007G197700.1_Pv_G19833_v2.1 | Phaseolus vulgaris | polypeptide |
| Phvul.007G197700.1 | Phvul.007G197700.1_Pv_G19833_v2.1-protein | Phaseolus vulgaris | polypeptide |
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Phvul.007G197700.1.v2.1.five_prime_UTR.1 | Phvul.007G197700.1.v2.1.five_prime_UTR.1_Pv_G19833_v2.1 | Phaseolus vulgaris | five_prime_UTR |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Phvul.007G197700.1.v2.1.CDS.1 | Phvul.007G197700.1.v2.1.CDS.1_Pv_G19833_v2.1 | Phaseolus vulgaris | CDS |
| Phvul.007G197700.1.v2.1.CDS.2 | Phvul.007G197700.1.v2.1.CDS.2_Pv_G19833_v2.1 | Phaseolus vulgaris | CDS |
| Phvul.007G197700.1.v2.1.CDS.3 | Phvul.007G197700.1.v2.1.CDS.3_Pv_G19833_v2.1 | Phaseolus vulgaris | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Phvul.007G197700.1.v2.1.three_prime_UTR.1 | Phvul.007G197700.1.v2.1.three_prime_UTR.1_Pv_G19833_v2.1 | Phaseolus vulgaris | three_prime_UTR |
Homology
BLAST of Phvul.007G197700.1 vs. DB:Swiss
Match: DRMH3_ARATH (Dormancy-associated protein homolog 3 OS=Arabidopsis thaliana OX=3702 GN=At1g56220 PE=1 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 5.261e-34 Identity = 57/73 (78.08%), Postives = 66/73 (90.41%), Query Frame = 1
Query: 1 MGLLDHLWDDTVAGPPPENGLGKLRKHHTFAFRPNSGK-ESDGGSLKSYGEDS-AEDAMRVTRSIMIVKPPGY 213
MGLLDHLWDDTVAGP PENGLGKLRKHHTF+FRP+SG +S+ GS +SYGEDS E+A++VTRSIMI+KPPGY
Sbjct: 1 MGLLDHLWDDTVAGPRPENGLGKLRKHHTFSFRPSSGNDQSEAGSARSYGEDSLPEEAVKVTRSIMIIKPPGY 73
BLAST of Phvul.007G197700.1 vs. DB:Swiss
Match: DRMH4_ARATH (Dormancy-associated protein homolog 4 OS=Arabidopsis thaliana OX=3702 GN=At1g54070 PE=3 SV=1) HSP 1 Score: 54.299 bits (129), Expect = 3.922e-9 Identity = 30/67 (44.78%), Postives = 40/67 (59.70%), Query Frame = 1
Query: 1 MGLLDHLWDDTVAGPPPENGLGKLRKHHTFAFRPNSGKESDGGSLKSYGEDSAEDAMRVTRSIMIVK 201
MG L LWD+TVAGP P+NGLGKLRKH + + +++S + D +VTRSIM+ K
Sbjct: 1 MGFLHKLWDETVAGPTPDNGLGKLRKHDSLS------------TVRSSPPSLSSD--QVTRSIMVTK 53
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR008406 | Dormancy/auxin associated protein | PFAM | PF05564 | Auxin_repressed | coord: 7..99
e-value: 6.0E-9
score: 36.6 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 67..93 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 112..127 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..127 |
Sequences
The
following sequences are available for this feature:
protein sequence of Phvul.007G197700.1_Pv_G19833_v2.1 >Phvul.007G197700.1_Pv_G19833_v2.1 ID=Phvul.007G197700.1_Pv_G19833_v2.1; Name=Phvul.007G197700.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=128bp
MGLLDHLWDDTVAGPPPENGLGKLRKHHTFAFRPNSGKESDGGSLKSYGE
DSAEDAMRVTRSIMIVKPPGYQSQSGSAPASPAGSTPPVSPFSGATRESF
RFRRRSTSDAFEKNGQNRPNSSSPFDV* back to topmRNA from alignment at Chr07:32098665..32100950+ Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Phvul.007G197700.1_Pv_G19833_v2.1 ID=Phvul.007G197700.1_Pv_G19833_v2.1; Name=Phvul.007G197700.1; organism=Phaseolus vulgaris; type=mRNA; length=2286bp; location=Sequence derived from: Chr07:32098665..32100950+ (Phaseolus vulgaris
GAATCTAGATCCGAAAGCCACGTAGTGTGCGCCCATGTGGTGCCTGATGA
AATCGACGGCGCGGATTTGTTCGCAGGCCCATGACTTGTTGGGCCTTTAA
CGCTTCGCCGTCGTTAAATATTCCTCTCATGCTGCTTATTCTCGGAACAT
GCTAACTGGATCCATCTGATCCGCTAAGACACGCCACACCCGTGTTCTCA
TGGGCCTCCTCGATCACTTGTGGGATGACACCGTCGCCGGCCCTCCGCCG
GAGAACGGCCTCGGCAAGCTCCGAAAGCACCACACCTTCGCTTTCCGACC
AAACTCCGGCAAGGGTACGCATGCATGCCCGTCGAACGCCGTTCAGCTTC
CCGAATTAATTTTAGCTATTCCAAAAAAAATAAGAACAAGAAGTAACCTT
TTGAAAAAATACTTACAACCTCACGTTAGGTGTGTTAAATCTTAACATGA
TTAAAAACAAGAAATCTGCTTATGCTAACGAGAAAGCGTTATCGTTGTGT
GATTTTGGTTTTGGTGGATCAGAATCAGACGGCGGAAGCCTGAAGTCATA
CGGTGAGGATTCGGCGGAAGATGCGATGAGAGTTACACGTAGTATCATGA
TCGTGAAGCCACCTGGATATCAGAGTCAGAGTGGATCGGCGCCGGCCTCA
CCCGCCGGTTCCACTCCTCCGGTGTCTCCGTTTTCAGGTAAGGTTGTGCT
TCACACTTTTTTTATTGTCAGTAAAATGACGAATTAGACCTTGGATTTTA
TTTTGGAACTGGGATTATCTCCTGGGAAACTGGAGTGACAGTGGGAGAGT
GTGACTGAGGCGGTTGCTGTAGAATAGGGTAATTCCGTCTATTCAGACGG
CGTTTCTCTTTCCTATGGTAGCGTAGCGTTAACTAGGGTTAGTCATGATG
GCTGTTTTGTTTCCTTTCCACATATATTCAACAATGTGCTTATCCATATC
CAGACACGTATTAACAAATAAAATAATGAATGTTACAGGTTTTTTTAAAG
TTTAAAAAGTGAGATAAGAAATAAGTTGATTGTATAATTGAGGGTGTAAA
AAAATGTTTGCTCAACACTAGTAAATATTACTATTGAAAATACAATTATC
TTTTGTTGTTCATTATTACTCCTTGGATTTTTTAAGAATTTTTATTTTTA
TTTATTTTTTATTAACAAATTTTAAGATTACTTTATTATTTATCAACTAG
ACTAGTGTGTATTTCAATCTTTAAATAATTTATACGTATATTTATTGTGT
GGATAAAAAAAAGGTAAAATAAGAAATTATATAATTACTTTATTAAAATT
AAAAAAACATGTTATATTTTTGGTTTTATAAAGAAAACTAACTGTAGCAT
TTAGGTTTTGAAGCTGTCACCCTGGGGTAACTTCTGAATTGAGTTTGTTA
CATGGTATAGATGTACGATAAAAGGCTTATTTTCTTGGGTTTTAAGGCTA
TATATATATATATATATATATATATATATAACAACATACAGGGTTTTAGG
ATATTTATCTGTTACTGTTTGGAAAGTCTATCCAGAAGATGTTCTTGATG
ACGTAAATGCACACACAACATGATAGTAATATCTGTACAAGTGATGGAGG
GATTCGTACGAGAGTGAATGCATCTTTATAGTTTATGTCTCAACGCTACG
TTTTGTTATTGTCCGTATAAAATGTATGAAGAAAAACTGAAAAAGGTCTG
CTAATGTAATAATATGGTCGCAATATGAAGCAGTTTAATGAAGAATATAG
CATGAAATACTTACTGTTTATGCGTGCATGTATGGTACTGATACAGGAGC
TACTAGAGAGTCCTTCCGCTTTCGAAGAAGGTCGACATCTGATGCGTTCG
AGAAGAATGGCCAGAACAGACCAAACTCTTCTTCTCCTTTCGATGTGTGA
GAAATAACACTCGTCCCTCCTCCATGATGACTACAAAAATCAAAACCCAG
TTCGTTTTCCCTGCCTTTTTTGGTCGTGATGTCTCCATTTTTGTTTACCT
TTTGTGCATATATATATATATACATATATATATATATACATATATATATA
TATATATATGTGTGTGTGTGTATGTAAGTTCATGATGGGAGGTAGCTGTG
GGTGGTTTAACATATCAGTCTTAGTTTGTCTACTGTTAAACTAGTTATGG
TTGTGTCGGTTAGCTGTAAATATGTAAAAAACGCAGATATGGGCGTGCTT
TTGTTAAGTGTACTGTGTATATATATAAAGCCTTATCAAGGTTTGTTTAA
TTAGTGTTTGCTTACACTCTCTAAGCTCTTTCTGGG back to topCoding sequence (CDS) from alignment at Chr07:32098665..32100950+ >Phvul.007G197700.1_Pv_G19833_v2.1 ID=Phvul.007G197700.1_Pv_G19833_v2.1; Name=Phvul.007G197700.1; organism=Phaseolus vulgaris; type=CDS; length=384bp; location=Sequence derived from: Chr07:32098665..32100950+ (Phaseolus vulgaris
ATGGGCCTCCTCGATCACTTGTGGGATGACACCGTCGCCGGCCCTCCGCC
GGAGAACGGCCTCGGCAAGCTCCGAAAGCACCACACCTTCGCTTTCCGAC
CAAACTCCGGCAAGGAATCAGACGGCGGAAGCCTGAAGTCATACGGTGAG
GATTCGGCGGAAGATGCGATGAGAGTTACACGTAGTATCATGATCGTGAA
GCCACCTGGATATCAGAGTCAGAGTGGATCGGCGCCGGCCTCACCCGCCG
GTTCCACTCCTCCGGTGTCTCCGTTTTCAGGAGCTACTAGAGAGTCCTTC
CGCTTTCGAAGAAGGTCGACATCTGATGCGTTCGAGAAGAATGGCCAGAA
CAGACCAAACTCTTCTTCTCCTTTCGATGTGTGA back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR008406 | DRM/ARP |
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